Proline cis-trans isomerization and protein folding

Biochemistry

Volumn 41, Issue 50, 2002, Pages 14637-14644

  Wedemeyer, William J ^a   Welker, Ervin ^a   Scheraga, Harold A ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN FOLDING;

CONFORMATIONS; ISOMERIZATION; ISOMERS; PROTEINS;

BIOCHEMISTRY;

PANCREATIC RIBONUCLEASE; PROLINE;

CHEMICAL REACTION KINETICS; CONFORMATIONAL TRANSITION; DISULFIDE BOND; ISOMER; ISOMERISM; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN FOLDING; REVIEW;

ANIMALS; CATTLE; ISOENZYMES; MODELS, CHEMICAL; PROLINE; PROTEIN CONFORMATION; PROTEIN FOLDING; RIBONUCLEASE, PANCREATIC; STEREOISOMERISM;

BOVINAE;

EID: 0037126686     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi020574b     Document Type: Review

References (86)

1. Brandts, J. F., Halvorson, H. R., and Brennan, M. (1975) Biochemistry 14, 4953-4963.
2. Wüthrich, K., Grathwohl, C., and Schwyzer, R. (1974) in Peptides, Polypeptides and Protein" (Blout, E. R., Bovey, F. A., Goodman, M., and Lotan, N., Eds.) pp 300-307, Wiley, New York.
3. Zimmerman, S. S., and Scheraga, H. A. (1976) Macromolecules 9, 408-416.
4. Steinberg, I. Z., Harrington, W. F., Berger, A., Sela, M., and Katchalski, E. (1960) J. Am. Chem. Soc. 82, 5263-5279.
5. Pincus, M. R., Gerewitz, F., Wako, H., and Scheraga, H. A. (1983) J. Protein Chem. 2, 131-146.
6. Kang, Y. K. (2002) J. Phys. Chem. B 106, 2074-2082.
7. Corey, R. B., and Pauling, L. (1953) Proc. R, Soc. London, Ser B 141, 10-20.
8. Drakenberg, T., Dahlqvist, K.-I., and Forsén, S. (1972) J. Phys. Chem. 76, 2178-2183.
9. Mandelkern, L. (1967) in Poly-α-Amino Acids (Fasman, G. D., Ed.) pp 675-724, Marcel Dekker, New York.
10. Tanaka, S., and Scheraga, H. A. (1975) Macromolecules 8, 516-521.
11. Stein, R. L. (1993) Adv. Protein Chem. 44, 1-24.
12. Schmid, F. X., Mayr, L. M., Mücke, M., and Schónbrunner, E. R. (1993) Adv. Protein Chem. 44, 25-66.
13. Neira, J. L., and Rico, M. (1997) Folding Des. 2, RI-RII.
14. Raines, R. T. (1998) Chem. Rev. 98, 1045-1065.
15. Wlodawer, A., Svensson, L, A., Sjólin, L., and Gilliland, G. L. (1988) Biochemistry 27, 2705-2717.
16. Tsong, T. Y., Baldwin, R. L., and Elson, E. L. (1971) Proc. Natl. Acad. Sci. U.S.A. 68, 2712-2715.
17. Tsong, T. Y., Baldwin, R. L., and Elson, E. L. (1972) Proc. Natl. Acad. Sci. U.S.A. 69, 1809-1812.
18. Cook, K. H., Schmid, F. X., and Baldwin, R. L. (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 6157-6161.
19. Garel, J.-R., and Baldwin, R. L. (1973) Proc. Natl. Acad. Sci. U.S.A. 70, 3347-3351.
20. Schmid, F. X., and Baldwin, R. L. (1978) Proc. Natl. Acad. Sci. U.S.A. 75, 4764-4768.
21. Schmid, F. X., and Baldwin, R. L. (1979) J. Mol. Biol. 133, 285-287.
22. Houry, W. A., Rothwarf, D. M., and Schemga, H. A. (1994) Biochemistry 33, 2516-2530.
23. Dodge, R. W., and Scheraga, H. A. (1996) Biochemistry 35, 1548-1559.
24. Houry, W. A., and Scheraga, H. A. (1996) Biochemistry 35, 11719-11733.
25. Lin, L.-N., and Brandts, J. F. (1983) Biochemistry 22, 564-573.
26. Juminaga, D., Wedemeyer, W. J., and Scheraga, H. A. (1998) Biochemistry 37, 11614-11620.
27. An, S. S. A., Lester, C. C., Peng, J.-L., Li, Y.-J., Rothwarf, D. M., Welker, E., Thannhauser, T. W., Zhang, L. S., Tam, J. P., and Scheraga, H. A. (1999) J. Am. Chem. Soc. 121, 11558-11566.
28. Welker, E., and Scheraga, H. A. (1999) Biochem. Biophys. Res. Commun. 254, 147-151.
29. Cerovsky, V., Welker, E., and Scheraga, H. A. (2002) J. Pept. Res. (in press).
30. Dyson, H. J., Rance, M., Houghten, R. A., Lerner, R. A., and Wright, P. E. (1988) J. Mol. Biol. 201, 161-200.
31. Raleigh, D. P., Evans, P. A., Pitkeathly, M., and Dobson, C. M. (1992) J. Mol. Biol. 228, 338-342.
32. Juminaga, D., Wedemeyer, W. J., Garduño-Júarez, R., McDonald, M. A., and Scheraga, H. A. (1997) Biochemistry 36, 10131-10145.
33. Xiong, Y., Juminaga, D., Swapna, G. V. T., Wedemeyer, W. J., Scheraga, H. A., and Montelione, G. T. (2000) Protein Sci. 9, 421-426.
34. Pearson, M. A., Karplus, P. A., Dodge, R. W., Laity, J. H., and Scheraga, H. A. (1998) Protein Sci. 7, 1255-1258.
35. Matheson, R. R., Jr., and Scheraga, H. A. (1978) Macromolecules 11, 819-829.
36. Oka, M., Montelione, G. T., and Scheraga, H. A. (1984) J. Am. Chem. Soc. 106, 7959-7969.
37. Reimer, U., Scherer, G., Drewello, M., Kruber, S., Schutkowski, M., and Fischer, G. (1998) J. Mol. Biol. 279, 449-460.
38. Rehage, A., and Schmid, F. X. (1982) Biochemistry 21, 1499-1505.
39. Scheraga, H. A. (1967) Fed. Proc. 26, 1380-1387.
40. Aronsson, G., Brorsson, A.-C., Sahlman, L., and Jonsson, B.-H. (1997) FEBS Lett. 411, 359-364.
41. Sendak, R. A., Rothwarf, D. M., Wedemeyer, W. J., Houry, W. A., and Scheraga, H. A. (1996) Biochemistry 35, 12978-12992.
42. Schmid, F. X., Grafl, R., Wrba, A., and Beintema, J. J. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 872-876.
43. Iwaoka, M., Wedemeyer, W. J., and Scheraga, H. A. (1999) Biochemistry 38, 2805-2815.
44. Yao, J., Dyson, H. J., and Wright, P. E. (1994) J. Mol. Biol. 243, 754-766.
45. Kemmink, J., and Creighton, T. E. (1995) J. Mol. Biol. 245, 251-260.
46. Wu, W.-J., and Raleigh, D. P. (1998) Biopolymers 45, 381-394.
47. Cowgill, R. W. (1976) in Biochemical Fluorescence: Concepts, Vol. 2, pp 441-486.
48. Chavez, L. G., Jr., and Scheraga, H. A. (1980) Biochemistry 19, 996-1004.
49. Lewis, P. N., Gō, N., Gō, M., Kotelchuck, D., and Scheraga, H. A. (1970) Proc. Natl. Acad. Sci. U.S.A. 65. 810-815.
50. Lewis, P. N., Momany, F. A., and Scheraga, H. A. (1971) Proc. Natl. Acad. Sci. U.S.A. 68, 2293-2297.
51. Lewis, P. N., Momany, F. A., and Scheraga, H. A. (1973) Biochim. Biophys. Acta 303, 211-229.
52. Tanaka, S., and Scheraga, H. A. (1977) Macromolecules 10, 291-304.
53. Houry, W. A., Rothwarf, D. M., and Scheraga, H. A. (1995) Nat. Struct. Biol. 2, 495-503.
54. Houry, W. A., Rothwarf, D. M., and Scheraga, H. A. (1996) Biochemistry 35, 10125-10133.
55. Houry, W. A., and Scheraga, H. A. (1996) Biochemistry 35, 11734-11746.
56. Udgaonkar, J. B., and Baldwin, R. L. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 8197-8201.
57. Udgaonkar, J. B., and Baldwin, R. L. (1995) Biochemistry 34, 4088-4096.
58. Navon, A., Ittah, V., Landsman, P., Scheraga, H. A., and Haas, E. (2001) Biochemistry 40, 105-118.
59. Lin, S. H., Konishi, Y., Denton, M. E., and Scheraga, H. A. (1984) Biochemistry 23, 5504-5512.
60. Weber, P. C., Salemme, F. R., Lin, S. H., Konishi, Y., and Scheraga, H. A. (1985) J. Mol. Biol. 181, 453.
61. Lin, S. H., Konishi, Y., Nall, B. T., and Scheraga, H. A. (1985) Biochemistry 24, 2680-2686.
62. Wedemeyer, W. J., Welker, E., Narayan, M., and Scheraga, H. A. (2000) Biochemistry 39, 4207-4216.
63. Stimson, E. R., Montelione, G. T., Meinwald, Y. C., Rudolph, R. K. E., and Scheraga, H. A. (1982) Biochemistry 21, 5252-5262.
64. Ihara, S., and Ooi, T. (1985) Biochim. Biophys. Acta. 830, 109-112.
65. Schultz, D. A., Schmid, F. X., and Baldwin, R. L. (1992) Protein Sci. 1, 917-924.
66. Schultz, D. A., Friedman, A., and Fox, R. O. (1993) Protien Sci. 2 (Suppl. 1), 67. Abstract 66-M.
67. Montelione, G. T., Arnold, E., Meinwald, Y. C., Stimson, E. R., Denton, J. B., Huang, S.-G., Clardy, J., and Scheraga, H. A. (1984) J. Am. Chem. Soc. 106, 7946-7958.
68. Talluri, S., Montelione, G. T., van Duyne, G., Piela, L., Clardy, J., and Scheraga, H. A. (1987) J. Am. Chem. Soc. 109, 4473-4477.
69. Piela, L., Némethy, G., and Scheraga, H. A. (1987) J. Am. Chem. Soc. 109, 4477-4485.
70. Kim, P. S., and Baldwin, R. L. (1982) Annu. Rev. Biochem. 51, 459-489.
71. Schmid, F. X. (1993) Annu. Rev. Biophys. Biomol. Struct. 22, 123-143.
72. Nail, B. T. (1994) in Mechanism of Protein Folding (Pain. R. H., Ed.) pp 80-103. IRL Press, Oxford, U.K.
73. Odefey, C., Mayr, L. M., and Schmid, F. X. (1995) J. Mol. Biol. 245, 69-78.
74. Mayr, L. M., Odefey, C., Schutkowski, M., and Schmid, F. X. (1996) Biochemistry 35, 5550-5561.
75. Maki, K., Ikura, T., Hayano, T., Takahashi, N., and Kuwajima, K. (1999) Biochemistry 38, 2213-2223.
76. Hurle, M. R., Anderson, S., and Kuntz, I. D. (1991) Protein Eng. 4, 451-455.
77. Kelley, R. F., and Richards, F. M. (1987) Biochemistry 26, 6765-6774.
78. Wood, L. C., White, T. B., Ramdas, L., and Nall, B. T. (1988) Biochemistry 27, 8562-8568.
79. Rousseau, F., Schymkowitz, J. W. H., Sánchez delPino, M., and Itzhaki, L. S. (1998) J. Mol. Biol. 284, 503-519.
80. Clark, P. L., Weston, B. F., and Gierasch. L. M. (1998) Folding Des. 3, 401-412.
81. Goto, Y., and Hamaguchi, K. (1982) J. Mol. Biol. 156, 891-910.
82. Guijarro, J. I., Morton, C. J., Plaxco, K. W., Campbell, I. D., and Dobson, C. M. (1998) J. Mol. Biol. 276, 657-667.
83. Plaxco, K. W., Guijarro, J. I., Morton, C. J., Pitkeathly, M., Campbell, I. D., and Dobson, C. M. (1999) Biochemistry 37, 2529-2537.
84. Krebs, H., Schmid, F. X., and Jaenicke, R. (1983) J. Mol. Biol. 169, 619-635.
85. Creighlon, T. E. (1978) J. Mol. Biol. 125, 401-406.
86. Onuchic, J. N., Luthey-Schulten, Z., and Wolynes, P. G. (1997) Annu. Rev. Phys. Chem. 48, 545-600.