The swapping of terminal arms in ribonucleases: Comparison of the solution structure of monomeric bovine seminal and pancreatic ribonucleases

Biochemistry

Volumn 42, Issue 29, 2003, Pages 8704-8711

  Avitabile, Francesca ^a   Alfano, Caterina ^a   Spadaccini, Roberta ^a   Crescenzi, Orlando ^a   D'Ursi, Anna M ^b   D'Alessio, Giuseppe ^a   Tancredi, Teodorico ^c   Picone, Delia ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

^b UNIVERSITY OF SALERNO   (Italy)

^c CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATION; MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE; PROTEINS; REDUCTION;

RIBONUCLEASES;

BIOCHEMISTRY;

RIBONUCLEASE;

ALKYLATION; AMINO TERMINAL SEQUENCE; ANIMAL TISSUE; ARTICLE; CATTLE; COMPARATIVE STUDY; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME STRUCTURE; ENZYME SUBUNIT; ESCHERICHIA COLI; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PANCREAS; PRIORITY JOURNAL; PROTEIN LOCALIZATION; PROTEIN SECONDARY STRUCTURE; SPERM; TEMPERATURE; THREE DIMENSIONAL IMAGING;

ANIMALS; CATTLE; DIFFUSION; DIMERIZATION; ENDORIBONUCLEASES; ESCHERICHIA COLI; HYDROGEN BONDING; HYDROGEN-ION CONCENTRATION; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROLINE; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEASE, PANCREATIC; TEMPERATURE;

ANIMALIA; BOS TAURUS; BOVINAE; ESCHERICHIA COLI;

EID: 0041346015     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0342517     Document Type: Article

References (57)

1. Bennett, M. J., Schlunegger, M. P., and Eisenberg, D. (1995) Protein Sci. 4, 2455-2468.
2. Schlunegger, M. P., Bennett, M. J., and Eisenberg, D. (1997) Adv. Protein Chem. 50, 61-122.
3. Klafki, H. W., Pick, A. I., Pardowitz, I., Cole, T., Awni, L. A., Barnikol, H. U., Mayer, F., Kratzin, H. D., and Hilschmann, N. (1993) Biol. Chem. Hoppe Seyler 374, 1117-1122.
4. Prusiner, S. B. (1998) Adv. Virus Res. 35, 83-136.
5. Liu, Y., and Eisenberg, D. (2002) Protein Sci. 11, 1285-1299.
6. Crestfield, A. M., Stein, W. H., and Moore, S. (1962) Arch. Biochem. Biophys. 1, 217-222.
7. Mazzarella, L., Mattia, C. A., Capasso, S., and Di Lorenzo, G. (1987) Gazz. Chim. Ital. 117, 91-97.
8. Libonati, M., Bertoldi, M., and Sorrentino, S. (1996) Biochem. J. 318, 287-290.
9. Gotte, G., Bertoldi, M., and Libonati, M. (1999) Eur. J. Biochem. 265, 680-687.
10. Liu, Y., Hart, P. J., Schlunegger, M. P., and Eisenberg, D. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 3437-3442.
11. Liu, Y., Gotte, G., Libonati, M., and Eisenberg, D. (2001) Nat. Struct. Biol. 8, 211-214.
12. Adinolfi, S., Piccoli, R., Sica, F., and Mazzarella, L. (1996) FEBS Lett. 398, 326-332.
13. Nenci A., Gotte G., Bertoldi M., and Libonati, M. (2001) Protein Sci. 10, 2017-2027.
14. D'Alessio, G., Di Donato, A., Mazzarella, L., and Piccoli, R. (1997) in Ribonucleases: Structures and Functions (D'Alessio, G., Riordan, J. F., Eds.) pp 383-423, Academic Press, New York.
15. Piccoli, R., Tamburrini, M., Piccialli, G., Di Donato, A., Parente, A., and D'Alessio, G. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 1870-1874.
16. Mazzarella, L., Capasso, S., Demasi, D., Di Lorenzo, G., Mattia, C. A., and Zagari, A. (1993) Acta Crystallogr. D49, 389-402.
17. Piccoli, R., Di Donato, A., and D'Alessio, G. (1988) Biochem. J. 253, 329-336.
18. Cafaro, V., De Lorenzo, C., Piccoli, R., Bracale, A., Mastronicola, M. R., Di Donato, A., and D'Alessio, G. (1995) FEBS Lett. 359, 31-34.
19. Russo, A., Antignani, A., Giancola, C., and D'Alessio, G. (2002) J. Biol. Chem. 277, 48643-48649.
20. D'Alessio, G., Di Donato, A., Parente, A., and Piccoli, R. (1991) Trends Biochem. Sci. 16, 104-106.
21. D'Alessio, G., Malorni, M. C., and Parente, A. (1975) Biochemistry 14, 1116-1122.
22. Smith, G. K., and Schaffer, S. W. (1979) Arch. Biochem. Biophys. 196, 102-108.
23. D'Ursi, A., Oschkinat, H., Cieslar, C., Picone, D., D'Alessio, G., Amodeo, P., and Temussi, P. A. (1995) Eur. J. Biochem. 229, 494-502.
24. Crescenzi, O., Carotenuto, A., D'Ursi, A. M., Tancredi, T., D'Alessio, G., Avitabile, F., and Picone, D. (2001) J. Biomol. NMR 20, 289-290.
25. Sica, F., Di Fiore, A., Zagari, A., and Mazzarella, L. (2003) Proteins, in press.
26. Di Donato, A., and D'Alessio, G. (1981) Biochemistry 20, 7232-7237.
27. Kunitz, M. (1946) J. Biol. Chem. 164, 563-568.
28. Parente, A., Albanesi, D., Garzillo, A. M., and D'Alessio, G. (1977) Ital. J. Biochem. 26, 451-466.
29. Delaglio, F., Grzesiek, S., Vuister, G., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293.
30. Johnson, B. A., and Blevins, R. A. (1994) J. Biomol. NMR 4, 603-614.
31. Wishart, D. S., Bigam, C. G., Yao, J., Albigaard, F., Dyson, H. J., Oldfield, E., Markley, J. L., and Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
32. Zuiderweg, E. R. P., and Fesik, S. W. (1989) Biochemistry 28, 2387-2391.
33. Marion, D., Kay, L. E., Sparks, S. W., Torchia, D. A., and Bax, A. (1989) J. Am. Chem. Soc. 111, 1515-1517.
34. Vuister, G. W., and Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777.
35. Archer, S. J., Icura, M., Torchia, D. A., and Bax, A. (1991) J. Magn. Reson. 95, 636-641.
36. Bax, A., Icura, M., Kay, L. E., Torchia, D. A., and Tschudin, R. (1990) J. Magn. Reson. 86, 304-318.
37. Farrow, N. A., Muhandiram, R., Singer, A. U., Pascal, S. M., Kay, C. M., Gish, G., Shoelson, S. E., Pawson, T., Forman-Kay, J. D., and Kay, L. E. (1994) Biochemistry 33, 5984-6003.
38. Santoro, J., Gonzales, C., Bruix, M., Neira, J. L., Nieto, J. L., and Rico, M. (1993) J. Mol. Biol. 229, 722-734.
39. Neira, J. L., Sevilla, P., Medendez, M., Bruix, M., and Rico, M. (1999) J. Mol. Biol. 285, 627-643.
40. Capasso, S., Giordano, F., Mattia, C. A., Mazzarella, L., and Zagari, A. (1983) Biopolymers 22, 327-332.
41. Güntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
42. Güntert, P., Braun, W., and Wüthrich, K. (1991) J. Mol. Biol. 217, 517-530.
43. Güntert, P., Braun, W., Billeter, M., and Wüthrich, K. (1989) J. Am. Chem. Soc. 111, 3997-4004.
44. Baker, W. R., and Kintanar, A. (1996) Arch. Biochem. Biophys. 327, 189-199.
45. Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., III, DeBolt, S., Ferguson, D., Seibel, G., and Kollman, P. A. (1995) Comput. Phys. Commun. 91, 1-41.
46. Weiner, S. J., Kollman, P. A., Nguyen, D. T., and Case, D. A. (1986) J. Comput. Chem. 7, 230-238.
47. Baxter, N. J., and Williamson, M. P. (1997) J. Biomol. NMR 9, 359-369.
48. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graphics 14, 51-55.
49. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.
50. Price, W. S. (1997) Concepts Magn. Reson. 9, 299-336.
51. Price, W. S. (1998) Concepts Magn. Reson. 10, 197-237.
52. Wu, D., Chen, A., and Johnson, C. S., Jr. (1995) J. Magn. Reson., Ser. A 115, 260-264.
53. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486.
54. Ramachandran, G. N., and Sasisekharan, V. (1968) Adv. Protein Chem. 23, 283-437.
55. Shimotakahara, S., Rios, C. B., Laity, J. H., Zimmerman, D. E., Scheraga, H. A., and Montelione, G. T. (1997) Biochemistry 36, 6915-6929.
56. Di Donato, A., Cafaro, V., and D'Alessio G. (1994) J. Biol. Chem. 269, 17394-17396.
57. Cole, R., and Loria, J. P. (2002) Biochemistry 41, 6072-6081.