Radial compression property of ds-DNA molecules studied by a mesoscale model

EPL

Volumn 89, Issue 4, 2010, Pages

  Lei, Xiaoling ^a   Hu, Jun ^a   Fang, Haiping ^a,b  

^a SHANGHAI INSTITUTE OF APPLIED PHYSICS   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 79051470330     PISSN: 02955075     EISSN: 12864854     Source Type: Journal    
DOI: 10.1209/0295-5075/89/48003     Document Type: Article

References (46)

1. Alberts B., Johnson A., Lewis J., Raff M., Roberts K. and Walter P. 2002 Molecular Biology of the Cell 4th edition (New York: Garland Science Publishing), sect. 2
2. Allemand J. F., Bensimon D., Lavery R. and Croquette V. 1998 Proc. Natl. Acad. Sci. U.S.A. 95 14152
3. Bryant Z., Stone M. D., Gore J., Smith S. B., Cozzarelli N. R. and Bustamante C. 2003 Nature (London) 424 338
4. Bustamante C., Macosko J. C. and Wuite G. J. L. 2000 Nat. Rev. Mol. Cell Biol. 1 130
5. Gore J., Bryant Z., Noellmann M., Le M. U., Cozzarelli N. R. and Bustamante C. 2006 Nature (London) 442 836
6. Smith S. B., Cui Y. and Bustamante C. 1996 Science 271 795
7. Lionnet T., Joubaud S., Lavery R., Bensimon D. and Croquette V. 2006 Phys. Rev. Lett. 96 178102
8. Strick T. R., Croquette V. and Bensimon D. 2000 Nature (London) 404 901
9. Kuznetsov S. V., Sugimura S., Vivas P., Crothers D. M. and Ansari A. 2006 Proc. Natl. Acad. Sci. U.S.A 103 18515
10. Lavery R., Lebrun A., Allemand J. F., Bensimon D. and Croquette V. 2002 J. Phys.: Condens. Matter 14 383
11. Werner M. H., Gronenborn A. M. and Clore G. M. 1996 Science 271 778
12. Zhou X.-F., Sun J.-L., An H.-J., Guo Y.-C., Fang H.-P., Su C., Xiao X.-D., Huang W.-H., Li M.-Q., Shen W.-Q. and Hu J. 2005 Phys. Rev. E 71 062901
13. Zhou X.-F. PhD Thesis (2005)
14. Marko J. F. and Siggia E. D. 1994 Science 265 506
15. Seol Y., Li J. Y., Nelson P., Perkins T. T. and Betterton M. D. 2007 Biophys. J. 93 4360
16. Zhou H., Zhang Y. and Ou-Yang Z.-C. 1999 Phys. Rev. Lett. 82 4560
17. Yan J. and Marko J. F. 2004 Phys. Rev. Lett. 193 108108
18. Cluzel P., Lebrun A., Heller C., Lavery R., Viovy J.-L., Chatenay D. and Caron F. 1996 Science 271 792
19. Piana S. 2005 Nucleic Acids Res. 33 7029
20. Lohikoski R., Timonen J. and Laaksonen A. 2005 Chem. Phys. Lett. 407 23
21. Harris S. A., Sands Z. A. and Laughton C. A. 2005 Biophys. J. 88 1684
22. Malyshev A. V. 2007 Phys. Rev. Lett. 98 096801
23. Hübsch A., Endres R. G., Cox D. L. and Singh R.R. P. 2005 Phys. Rev. Lett. 94 178102
24. Hagan M. F., Dinner A. R., Chandler D. and Chakraborty A. K. 2003 Proc. Natl. Acad. Sci. U.S.A. 100 13922
25. Mergell B., Ejtehadi M. R. and Everaers R. 2003 Phys. Rev. E 68 021911
26. Sales-Pardo M., Guimera R., Moreira A. A., Widom J. and Amaral L. A. N. 2005 Phys. Rev. E 71 051902
27. Knotts T. A., Rathore N., Schwartz D. C. and de Pablo J. J. 2007 J. Chem. Phys. 126 084901
28. Becker N. B. and Everaers R. 2007 Phys. Rev. E 76 021923
29. Harald L. T. and Gregory A. V. 2005 J. Chem. Phys. 122 124906
30. Liverpool T. B., Golestanian R. and Kremer K. 1998 Phys. Rev. Lett. 80 405
31. Lei X. L., Wang X. F., Hu J. and Fang H. P. 2005 Chin. Phys. Lett. 22 1540
32. Dessinges M. N., Maier B., Zhang Y., Peliti M., Bensimon D. and Croquette V. 2002 Phys. Rev. Lett. 89 248102
33. Cocco S., Monasson R. and Marko J. F. 2001 Proc. Natl. Acad. Sci. U.S.A. 98 8608
34. Campa A. and Giansanti A. 1998 Phys. Rev. E 58 3585
35. Luo K. F., Ala-Nissila T., Ying S.-C. and Bhattacharya A. 2008 Phys. Rev. Lett. 100 058101
36. Zuo G. H., Hu J. and Fang H. P. 2009 Phys. Rev. E 79 031925
37. Frenkel D. and Smit B. 1996 Understanding Molecular Simulation: From Algorithms to Applications, 2nd edition (San Diego: Academic Press)
38. Léger J. F., Romano G., Sarkar A., Robert J., Bourdieu L., Chatenay D. and Marko J. F. 1999 Phys. Rev. Lett. 83 1066
39. Jing J., Reed J., Huang J., Hu X., Clarke V., Edington J., Housman D., Anantharaman T. S., Huff E. J., Mishra B., Porter B., Shenker A., Wolfson E., Hiort C., Kantor R., Aston C. and Schwartz D. C. 1998 Proc. Natl. Acad. Sci. U.S.A. 95 8046
40. Bensimon D., Simon A. J., Croquette V. and Bensimon A. 1995 Phys. Rev. Lett. 74 4754
41. Rivetti C., Guthold M. and Bustamante C. 1996 J. Mol. Biol. 264 919
42. Ke C., Humeniuk M., S-Gracz H. and Marszalek P. E. 2007 Phys. Rev. Lett. 99 018302
43. Yang W. 2006 DNA Repair 5 654
44. Dragan A. I., Li Z., Makeyeva E. N., Milgotina E. I., Liu Y., Crane-Robinson C. and Privalov P. L. 2006 Biochemistry 45 141
45. Crespo-Hernandez C. E., Cohen B. and Kohler B. 2005 Nature 436 1141
46. Ha S. C., Lowenhaupt K., Rich A., Kim Y.-G. and Kim K. K. 2005 Nature 437 1183