Simple screening method for double-strand DNA binders using hairpin DNA-modified magnetic beads

Bulletin of the Korean Chemical Society

Volumn 32, Issue 1, 2011, Pages 247-250

  Jo, Hunho ^a   Min, Kyoungin ^a   Song, Kyung Mi ^a   Ku, Ja Kang ^a   Han, Min Su ^b   Ban, Changill ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

^b Chung Ang University   (South Korea)

Author keywords

dsDNA binder; Hairpin DNA; HPLC; Magnetic bead; Screening

Indexed keywords

ANTICANCER DRUG; BINDING MATERIALS; DNA-BINDING; DOUBLE STRANDS; DSDNA BINDER; HAIRPIN DNA; HIGH-THROUGHPUT SCREENING; HPLC; HPLC ANALYSIS; MAGNETIC BEADS; MAGNETIC PARTICLE; MELTING TEMPERATURES; RELATIVE BINDING; REVERSE-PHASE COLUMN; SCREENING METHODS;

BINDERS; FUNCTIONAL MATERIALS; MAGNETIC SEPARATION; MAGNETISM;

DNA;

EID: 78951481721     PISSN: 02532964     EISSN: 12295949     Source Type: Journal    
DOI: 10.5012/bkcs.2011.32.1.247     Document Type: Article

References (38)

1. Shoemaker, R. H. Nat. Rev. Cancer. 2006, 6, 813-823.
2. O'Connor, P. M.; Jackman, J.; Bae, I.; Myers, T. G.; Fan, S.; Mutoh, M.; Scudiero, D. A.; Monks, A.; Sausville, E. A.; Weinstein, J. N.; Friend, S.; Fornace, A. J. Jr.; Kohn, K. W. Cancer Res. 1997, 57, 4285-4300.
3. Levin, M. A.; Ittman, M.; Melamed, J.; Lepor, H. J. Urol. 2005, 159, 471-475.
4. Yan, Y. K.; Melchart, M.; Habtemariam, A.; Sadler, P. J. Chem. Commun. 2005, 38, 4764-4776.
5. Ohmori, T.; Podack, E. R.; Nishio, K.; Takahashi, M.; Miyahara, Y.; Takeda, Y.; Kubota, N.; Funayama, Y.; Ogasawara, H.; Ohira, T.; Ohta, S.; Saijo, N. Biochem. Biophys. Res. Commun. 1993, 192, 30-36.
6. Suh, M.-E.; Park, S.-Y.; Lee, H.-J. Bull. Korean Chem. Soc. 2002, 23, 417-422.
7. Ol'shevskaya, V. A.; Zaytsev, A. V.; Savchenko, A. N.; Shtil, A. A.; Cheong, C. S.; Kalinin, V. N. Bull. Korean Chem. Soc. 2007, 28, 1910-1916.
8. Yang, X. L.; Wang, A. H. J. Pharmacol. Ther. 1999, 83, 181-215.
9. Bailly, C.; Denny, W. A.; Mellor, L. E.; Wakelin, L. P. G.; Waring, M. J. Biochemistry 1992, 31, 3514-3524.
10. Richards, A. D.; Rodgers, A. Chem. Soc. Rev. 2007, 36, 471-483.
11. Hamy, F.; Albrecht, G.; Flörsheimer, A.; Bailly, C. Biochem. Biophys. Res. Commun. 2000, 270, 393-399.
12. Olmsted, J., III.; Kearns, D. R. Biochemistry 1977, 16, 3647-3654.
13. Chu, T. C.; Marks, J. W., III.; Lavery, L. A.; Faulkner, S.; Rosenblum, M. G.; Ellington, A. D.; Levy, M. Cancer Res. 2006, 66, 5989-5992.
14. Farokhzad, O. C.; Cheng, J.; Teply, B. A.; Sherifi, I.; Jon, S.; Kantoff, P. W.; Richie, J. P.; Langer, R. Proc. Natl. Acad. Sci. USA 2006, 103, 6315-6320.
15. Ali-Boucetta, H.; Al-Jamal, K. T.; McCarthy, D.; Prato, M.; Bianco, A.; Kostarelos, K. Chem. Commun. 2008, 4, 459-461.
16. Huang, Y. F.; Shangguan, D. H.; Liu, H. P.; Phillips, J. A.; Zhang, X. L.; Chen, Y.; Tan, W. H. ChemBioChem 2009, 10, 862-868.
17. Müller, I.; Jenner, A.; Bruchelt, G.; Niethammer, D.; Halliwell, B. Biochem. Biophys. Res. Commun. 1997, 230, 254-257.
18. Lee, C. J.; Kang, J. S.; Kim, M. S.; Lee, K. P.; Lee, M. S. Bull. Korean Chem. Soc. 2004, 25, 1211-1216.
19. Thompson, L. A.; Ellman, J. A. Chem. Rev. 1996, 96, 555-600.
20. Balkenhohl, F.; von dem Bussche-Hünnefeld, C.; Lansky, A.; Zechel, C. Angew. Chem. 1996, 108, 2436-2487.
21. Boger, D. L.; Fink, B. E.; Hedrick, M. P. J. Am. Chem. Soc. 2000, 122, 6382-6394.
22. Nesterenko, V.; Putt, K. S.; Hergenrother, P. J. J. Am. Chem. Soc. 2003, 125, 14672-14673.
23. Hofstadler, S. A.; Griffey, R. H. Chem. Rev. 2001, 101, 377-390.
24. Robinson, H.; Priebe, W.; Chaires, J. B.; Wang, A. H.-J. Biochemistry 1997, 36, 8663-8670.
25. Pasternack, R. F.; Bustamante, C.; Collings, P. J.; Giannetto, A.; Gibbs, E. J. J. Am. Chem. Soc. 1993, 115, 5393-5399.
26. Li, C.-Z.; Liu, Y.; Luong, J. H. T. Anal. Chem. 2005, 77, 478-485.
27. Wyatt, E. E.; Galloway, W. R. J. D.; Thomas, G. L.; Welch, M.; Loiseleur, O.; Plowright, A. T.; Spring, D. R. Chem. Commun. 2008, 40, 4962-4964.
28. Mitchison, T. J. ChemBioChem 2005, 6, 33-39.
29. Han, M. S.; Lytton-Jean, A. K. R.; Mirkin, C. A. J. Am. Chem. Soc. 2006, 128, 4954-4955.
30. Han, M. S.; Lytton-Jean, A. K. R.; Oh, B.-K.; Heo, J.; Mirkin, C. A. Angew. Chem. Int. Ed. 2006, 45, 1807-1810.
31. Safarik, I.; Safarikova, M. BioMag. Res. Tech. 2004, 2, 1-7.
32. Perez, J. M.; O'Loughin, T.; Simeone, F. J.; Weissleder, R.; Josephson, L. J. Am. Chem. Soc. 2002, 124, 2856-2857.
33. Wochner, A.; Cech, B.; Menger, M.; Erdmann, V. A.; Glökler, J. BioTechniques 2007, 43, 343-353.
34. Stoeva, S. I.; Lee, J.-S.; Thaxton, C. S.; Mirkin, C. A. Angew. Chem. Int. Ed. 2006, 45, 3303-3306.
35. Tse, W. C.; Boger, D. L. Acc. Chem. Res. 2004, 37, 61-69.
36. Reha, D.; Kabelác, M.; Ryjácek, F.; Sponer, J.; Sponer, J. E.; Elstner, M.; Suhai, S.; Hobza, P. J. Am. Chem. Soc. 2002, 124, 3366-3376.
37. Antonini, I.; Polucci, P.; Jenkins, T. C.; Kelland, L. R.; Menta, E.; Pescalli, N.; Stefanska, B.; Mazerski, J.; Martelli, S. J. Med. Chem. 1997, 40, 3749-3755.
38. Huang, Q.; Fu, W. L. Clin. Chem. Lab. Med. 2005, 43, 841-842.