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Volumn 143, Issue 5, 2010, Pages 725-736

Stepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE; HISTONE H2AZ; HISTONE H2B; PROTEIN SWR1; TRANSCRIPTION FACTOR SNF; UNCLASSIFIED DRUG;

EID: 78751536862     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cell.2010.10.019     Document Type: Article
Times cited : (179)

References (50)
  • 1
    • 34047111213 scopus 로고    scopus 로고
    • Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
    • Albert, I., Mavrich, T.N., Tomsho, L.P., Qi, J., Zanton, S.J., Schuster, S.C., and Pugh, B.F. (2007). Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome. Nature 446, 572-576.
    • (2007) Nature , vol.446 , pp. 572-576
    • Albert, I.1    Mavrich, T.N.2    Tomsho, L.P.3    Qi, J.4    Zanton, S.J.5    Schuster, S.C.6    Pugh, B.F.7
  • 3
    • 33947524604 scopus 로고    scopus 로고
    • Histone variants-the structure behind the function
    • Ausió, J. (2006). Histone variants-the structure behind the function. Brief. Funct. Genomics Proteomics 5, 228-243.
    • (2006) Brief. Funct. Genomics Proteomics , vol.5 , pp. 228-243
    • Ausió, J.1
  • 4
    • 34948875399 scopus 로고    scopus 로고
    • Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo
    • Barbaric, S., Luckenbach, T., Schmid, A., Blaschke, D., Hörz, W., and Korber, P. (2007). Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo. J. Biol. Chem. 282, 27610-27621.
    • (2007) J. Biol. Chem. , vol.282 , pp. 27610-27621
    • Barbaric, S.1    Luckenbach, T.2    Schmid, A.3    Blaschke, D.4    Hörz, W.5    Korber, P.6
  • 5
    • 0028098798 scopus 로고
    • Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase
    • Brune, M., Hunter, J.L., Corrie, J.E., and Webb, M.R. (1994). Direct, real-time measurement of rapid inorganic phosphate release using a novel fluorescent probe and its application to actomyosin subfragment 1 ATPase. Biochemistry 33, 8262-8271.
    • (1994) Biochemistry , vol.33 , pp. 8262-8271
    • Brune, M.1    Hunter, J.L.2    Corrie, J.E.3    Webb, M.R.4
  • 6
    • 70249121045 scopus 로고    scopus 로고
    • The logic of chromatin architecture and remodelling at promoters
    • Cairns, B.R. (2009). The logic of chromatin architecture and remodelling at promoters. Nature 461, 193-198.
    • (2009) Nature , vol.461 , pp. 193-198
    • Cairns, B.R.1
  • 7
    • 0028139274 scopus 로고
    • Analysis of a histone H2A variant from fission yeast: Evidence for a role in chromosome stability
    • Carr, A.M., Dorrington, S.M., Hindley, J., Phear, G.A., Aves, S.J., and Nurse, P. (1994). Analysis of a histone H2A variant from fission yeast: evidence for a role in chromosome stability. Mol. Gen. Genet. 245, 628-635.
    • (1994) Mol. Gen. Genet. , vol.245 , pp. 628-635
    • Carr, A.M.1    Dorrington, S.M.2    Hindley, J.3    Phear, G.A.4    Aves, S.J.5    Nurse, P.6
  • 9
    • 58149522909 scopus 로고    scopus 로고
    • Making copies of chromatin: The challenge of nucleosomal organization and epigenetic information
    • Corpet, A., and Almouzni, G. (2009). Making copies of chromatin: the challenge of nucleosomal organization and epigenetic information. Trends Cell Biol. 19, 29-41.
    • (2009) Trends Cell Biol. , vol.19 , pp. 29-41
    • Corpet, A.1    Almouzni, G.2
  • 10
    • 77956184148 scopus 로고    scopus 로고
    • The histone shuffle: Histone chaperones in an energetic dance
    • Das, C., Tyler, J.K., and Churchill, M.E. (2010). The histone shuffle: histone chaperones in an energetic dance. Trends Biochem. Sci. 35, 476-489.
    • (2010) Trends Biochem. Sci. , vol.35 , pp. 476-489
    • Das, C.1    Tyler, J.K.2    Churchill, M.E.3
  • 11
    • 33947137710 scopus 로고    scopus 로고
    • Dynamics of replication-independent histone turnover in budding yeast
    • Dion, M.F., Kaplan, T., Kim, M., Buratowski, S., Friedman, N., and Rando, O.J. (2007). Dynamics of replication-independent histone turnover in budding yeast. Science 315, 1405-1408.
    • (2007) Science , vol.315 , pp. 1405-1408
    • Dion, M.F.1    Kaplan, T.2    Kim, M.3    Buratowski, S.4    Friedman, N.5    Rando, O.J.6
  • 12
    • 34547633654 scopus 로고    scopus 로고
    • P21 transcription is regulated by differential localization of histone H2A.Z
    • Gévry, N., Chan, H.M., Laflamme, L., Livingston, D.M., and Gaudreau, L. (2007). p21 transcription is regulated by differential localization of histone H2A.Z. Genes Dev. 21, 1869-1881.
    • (2007) Genes Dev. , vol.21 , pp. 1869-1881
    • Gévry, N.1    Chan, H.M.2    Laflamme, L.3    Livingston, D.M.4    Gaudreau, L.5
  • 13
    • 33750732319 scopus 로고    scopus 로고
    • Reuniting the contrasting functions of H2A.Z
    • Guillemette, B., and Gaudreau, L. (2006). Reuniting the contrasting functions of H2A.Z. Biochem. Cell Biol. 84, 528-535.
    • (2006) Biochem. Cell Biol. , vol.84 , pp. 528-535
    • Guillemette, B.1    Gaudreau, L.2
  • 14
    • 33846949678 scopus 로고    scopus 로고
    • Activation domains drive nucleosome eviction by SWI/SNF
    • Gutiérrez, J.L., Chandy, M., Carrozza, M.J., and Workman, J.L. (2007). Activation domains drive nucleosome eviction by SWI/SNF. EMBO J. 26, 730-740.
    • (2007) EMBO J. , vol.26 , pp. 730-740
    • Gutiérrez, J.L.1    Chandy, M.2    Carrozza, M.J.3    Workman, J.L.4
  • 15
    • 61849170193 scopus 로고    scopus 로고
    • Genome-wide profiling of salt fractions maps physical properties of chromatin
    • Henikoff, S., Henikoff, J.G., Sakai, A., Loeb, G.B., and Ahmad, K. (2009). Genome-wide profiling of salt fractions maps physical properties of chromatin. Genome Res. 19, 460-469.
    • (2009) Genome Res. , vol.19 , pp. 460-469
    • Henikoff, S.1    Henikoff, J.G.2    Sakai, A.3    Loeb, G.B.4    Ahmad, K.5
  • 16
    • 0034307468 scopus 로고    scopus 로고
    • Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants
    • Jackson, J.D., and Gorovsky, M.A. (2000). Histone H2A.Z has a conserved function that is distinct from that of the major H2A sequence variants. Nucleic Acids Res. 28, 3811-3816.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3811-3816
    • Jackson, J.D.1    Gorovsky, M.A.2
  • 17
    • 66449130744 scopus 로고    scopus 로고
    • RVB1/RVB2: Running rings around molecular biology
    • Jha, S., and Dutta, A. (2009). RVB1/RVB2: running rings around molecular biology. Mol. Cell 34, 521-533.
    • (2009) Mol. Cell , vol.34 , pp. 521-533
    • Jha, S.1    Dutta, A.2
  • 18
    • 75349098018 scopus 로고    scopus 로고
    • A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
    • Jiang, C., and Pugh, B.F. (2009a). A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol. 10, R109.
    • (2009) Genome Biol. , vol.10
    • Jiang, C.1    Pugh, B.F.2
  • 19
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang, C., and Pugh, B.F. (2009b). Nucleosome positioning and gene regulation: advances through genomics. Nat. Rev. Genet. 10, 161-172.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 20
    • 34250745886 scopus 로고    scopus 로고
    • Nucleosome stability mediated by histone variants H3.3 and H2A.Z
    • Jin, C., and Felsenfeld, G. (2007). Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev. 21, 1519-1529.
    • (2007) Genes Dev. , vol.21 , pp. 1519-1529
    • Jin, C.1    Felsenfeld, G.2
  • 23
    • 70349173215 scopus 로고    scopus 로고
    • Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome
    • Koerber, R.T., Rhee, H.S., Jiang, C., and Pugh, B.F. (2009). Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome. Mol. Cell 35, 889-902.
    • (2009) Mol. Cell , vol.35 , pp. 889-902
    • Koerber, R.T.1    Rhee, H.S.2    Jiang, C.3    Pugh, B.F.4
  • 24
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • Kornberg, R.D., and Lorch, Y. (1999). Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98, 285-294.
    • (1999) Cell , vol.98 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 26
    • 4544262211 scopus 로고    scopus 로고
    • Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4
    • Krogan, N.J., Baetz, K., Keogh, M.C., Datta, N., Sawa, C., Kwok, T.C., Thompson, N.J., Davey, M.G., Pootoolal, J., Hughes, T.R., et al. (2004). Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. Proc. Natl. Acad. Sci. USA 101, 13513-13518.
    • (2004) Proc. Natl. Acad. Sci USA , vol.101 , pp. 13513-13518
    • Krogan, N.J.1    Baetz, K.2    Keogh, M.C.3    Datta, N.4    Sawa, C.5    Kwok, T.C.6    Thompson, N.J.7    Davey, M.G.8    Pootoolal, J.9    Hughes, T.R.10
  • 28
    • 29444454191 scopus 로고    scopus 로고
    • Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling
    • Li, B., Pattenden, S.G., Lee, D., Gutiérrez, J., Chen, J., Seidel, C., Gerton, J., and Workman, J.L. (2005). Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Proc. Natl. Acad. Sci. USA 102, 18385-18390.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 18385-18390
    • Li, B.1    Pattenden, S.G.2    Lee, D.3    Gutiérrez, J.4    Chen, J.5    Seidel, C.6    Gerton, J.7    Workman, J.L.8
  • 29
    • 0031455421 scopus 로고    scopus 로고
    • Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants
    • Liang, C., and Stillman, B. (1997). Persistent initiation of DNA replication and chromatin-bound MCM proteins during the cell cycle in cdc6 mutants. Genes Dev. 11, 3375-3386.
    • (1997) Genes Dev. , vol.11 , pp. 3375-3386
    • Liang, C.1    Stillman, B.2
  • 30
  • 32
    • 0037423930 scopus 로고    scopus 로고
    • Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin
    • Meneghini, M.D., Wu, M., and Madhani, H.D. (2003). Conserved histone variant H2A.Z protects euchromatin from the ectopic spread of silent heterochromatin. Cell 112, 725-736.
    • (2003) Cell , vol.112 , pp. 725-736
    • Meneghini, M.D.1    Wu, M.2    Madhani, H.D.3
  • 33
    • 0348184963 scopus 로고    scopus 로고
    • ATPdriven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • Mizuguchi, G., Shen, X., Landry, J., Wu, W.H., Sen, S., and Wu, C. (2004). ATPdriven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303, 343-348.
    • (2004) Science , vol.303 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.H.4    Sen, S.5    Wu, C.6
  • 34
    • 67349147423 scopus 로고    scopus 로고
    • Chromatin remodelling beyond transcription: The INO80 and SWR1 complexes
    • Morrison, A.J., and Shen, X. (2009). Chromatin remodelling beyond transcription: the INO80 and SWR1 complexes. Nat. Rev. Mol. Cell Biol. 10, 373-384.
    • (2009) Nat. Rev. Mol. Cell Biol. , vol.10 , pp. 373-384
    • Morrison, A.J.1    Shen, X.2
  • 36
    • 67650711140 scopus 로고    scopus 로고
    • Genome-wide views of chromatin structure
    • Rando, O.J., and Chang, H.Y. (2009). Genome-wide views of chromatin structure. Annu. Rev. Biochem. 78, 245-271.
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 245-271
    • Rando, O.J.1    Chang, H.Y.2
  • 37
    • 34547277498 scopus 로고    scopus 로고
    • Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
    • Rufiange, A., Jacques, P.E., Bhat, W., Robert, F., and Nourani, A. (2007). Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol. Cell 27, 393-405.
    • (2007) Mol. Cell , vol.27 , pp. 393-405
    • Rufiange, A.1    Jacques, P.E.2    Bhat, W.3    Robert, F.4    Nourani, A.5
  • 38
    • 33646375978 scopus 로고    scopus 로고
    • Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes
    • Ruhl, D.D., Jin, J., Cai, Y., Swanson, S., Florens, L., Washburn, M.P., Conaway, R.C., Conaway, J.W., and Chrivia, J.C. (2006). Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes. Biochemistry 45, 5671-5677.
    • (2006) Biochemistry , vol.45 , pp. 5671-5677
    • Ruhl, D.D.1    Jin, J.2    Cai, Y.3    Swanson, S.4    Florens, L.5    Washburn, M.P.6    Conaway, R.C.7    Conaway, J.W.8    Chrivia, J.C.9
  • 39
    • 0034721645 scopus 로고    scopus 로고
    • Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes
    • Santisteban, M.S., Kalashnikova, T., and Smith, M.M. (2000). Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes. Cell 103, 411-422.
    • (2000) Cell , vol.103 , pp. 411-422
    • Santisteban, M.S.1    Kalashnikova, T.2    Smith, M.M.3
  • 40
    • 21744434032 scopus 로고    scopus 로고
    • A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling
    • Smith, C.L., and Peterson, C.L. (2005). A conserved Swi2/Snf2 ATPase motif couples ATP hydrolysis to chromatin remodeling. Mol. Cell. Biol. 25, 5880-5892.
    • (2005) Mol. Cell. Biol. , vol.25 , pp. 5880-5892
    • Smith, C.L.1    Peterson, C.L.2
  • 41
    • 0033664380 scopus 로고    scopus 로고
    • Crystal structure of a nucleosome core particle containing the variant histone H2A.Z
    • Suto, R.K., Clarkson, M.J., Tremethick, D.J., and Luger, K. (2000). Crystal structure of a nucleosome core particle containing the variant histone H2A.Z. Nat. Struct. Biol. 7, 1121-1124.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 1121-1124
    • Suto, R.K.1    Clarkson, M.J.2    Tremethick, D.J.3    Luger, K.4
  • 42
    • 60349122111 scopus 로고    scopus 로고
    • A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
    • Venters, B.J., and Pugh, B.F. (2009). A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res. 19, 360-371.
    • (2009) Genome Res. , vol.19 , pp. 360-371
    • Venters, B.J.1    Pugh, B.F.2
  • 43
    • 74949110964 scopus 로고    scopus 로고
    • High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • Weiner, A., Hughes, A., Yassour, M., Rando, O.J., and Friedman, N. (2010). High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res. 20, 90-100.
    • (2010) Genome Res , vol.20 , pp. 90-100
    • Weiner, A.1    Hughes, A.2    Yassour, M.3    Rando, O.J.4    Friedman, N.5
  • 44
    • 0019319471 scopus 로고
    • Histone 2A, a heteromorphous family of eight protein species
    • West, M.H., and Bonner, W.M. (1980). Histone 2A, a heteromorphous family of eight protein species. Biochemistry 19, 3238-3245.
    • (1980) Biochemistry , vol.19 , pp. 3238-3245
    • West, M.H.1    Bonner, W.M.2
  • 45
    • 28544442465 scopus 로고    scopus 로고
    • Swc2 is a widely conserved H2AZ-binding module essential for ATPdependent histone exchange
    • Wu, W.H., Alami, S., Luk, E., Wu, C.H., Sen, S., Mizuguchi, G., Wei, D., and Wu, C. (2005). Swc2 is a widely conserved H2AZ-binding module essential for ATPdependent histone exchange. Nat. Struct. Mol. Biol. 12, 1064-1071.
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 1064-1071
    • Wu, W.H.1    Alami, S.2    Luk, E.3    Wu, C.H.4    Sen, S.5    Mizuguchi, G.6    Wei, D.7    Wu, C.8
  • 46
    • 65249187832 scopus 로고    scopus 로고
    • N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex
    • Wu, W.H., Wu, C.H., Ladurner, A., Mizuguchi, G., Wei, D., Xiao, H., Luk, E., Ranjan, A., and Wu, C. (2009). N terminus of Swr1 binds to histone H2AZ and provides a platform for subunit assembly in the chromatin remodeling complex. J. Biol. Chem. 284, 6200-6207.
    • (2009) J. Biol. Chem. , vol.284 , pp. 6200-6207
    • Wu, W.H.1    Wu, C.H.2    Ladurner, A.3    Mizuguchi, G.4    Wei, D.5    Xiao, H.6    Luk, E.7    Ranjan, A.8    Wu, C.9
  • 47
  • 48
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • Zhang, H., Roberts, D.N., and Cairns, B.R. (2005). Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123, 219-231.
    • (2005) Cell , vol.123 , pp. 219-231
    • Zhang, H.1    Roberts, D.N.2    Cairns, B.R.3
  • 49
    • 38949091078 scopus 로고    scopus 로고
    • H2A.Z: View from the top
    • Zlatanova, J., and Thakar, A. (2008). H2A.Z: view from the top. Structure 16, 166-179.
    • (2008) Structure , vol.16 , pp. 166-179
    • Zlatanova, J.1    Thakar, A.2
  • 50
    • 70349292569 scopus 로고    scopus 로고
    • Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
    • Zofall, M., Fischer, T., Zhang, K., Zhou, M., Cui, B., Veenstra, T.D., and Grewal, S.I. (2009). Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Nature 461, 419-422.
    • (2009) Nature , vol.461 , pp. 419-422
    • Zofall, M.1    Fischer, T.2    Zhang, K.3    Zhou, M.4    Cui, B.5    Veenstra, T.D.6    Grewal, S.I.7


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