Inter species testing of brassica microsatellites available in public domain and their potential utilization for comparative genomics in Cruciferae

Pakistan Journal of Botany

Volumn 42, Issue 6, 2010, Pages 3875-3885

  Sadia, Munazza ^a   Rabbani, Malik Ashiq ^b   Shahid Masood, M ^b   Pearce, S R ^c   Malik, Salman A ^a  

^a QUAID I AZAM UNIVERSITY   (Pakistan)

^b NATIONAL AGRICULTURAL RESEARCH CENTRE   (Pakistan)

^c UNIVERSITY OF SUSSEX   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BRASSICA; BRASSICA CARINATA; BRASSICA JUNCEA; BRASSICA NAPUS; BRASSICA NIGRA; BRASSICA RAPA; BRASSICA RAPA SUBSP. RAPA; BRASSICACEAE;

EID: 78751492035     PISSN: 05563321     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. Alamerew, S., S. Chebotar, X. Huang, M. Roder and A. Borner. 2004. Genetic diversity in Ethiopean hexaploid and tetraploid wheat germplasm assessed by microsatellite markers. Genet. Resour. Crop. Evol., 51: 559-567.
2. Babula, D., M. Kaczmarek, A. Barakat, M. Delseny, C.F. Quiros and J. Sadowski. 2003. Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: Complexity of the comparative map. Mol. Gen. Genomics, 268: 656-665.
3. Becker, H. and G.M. Engqvist. 1995. The potential of re-synthesized rapeseed for hybrid breeding. Proc 9th Int Rapeseed Cong., GCIRC, Cambridge, England, pp. 113-115.
4. Broun, P. and S.D. Tanksley. 1996. Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol. Gen. Genet., 250: 39-49.
5. Dib, C., S. Faure, C. Fizames, D. Samson, N. Drouot and A. Vignal. 1996. A comprehensive genetic map of human genome based on 5264 microsatellites. Nature, 380: 152-154.
6. Dice, L.R. 1945. Measures of the amount of ecologic association between species. Ecology, 26: 297-302.
7. Dieterich, W.F., J. Miller, R. Steen, M.A. Merchant, D. Damron-Boles and Z. Husain. 1996. A comprehensive genetic map of the mouse genome. Nature, 380: 149-152.
8. Kole, C., P.H. Williams, S.R. Rimmer and T.C. Osborn. 2002. Linkage mapping of genes controlling resistance to white rust (Albugo Candida) in B. rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thaliana. Genome, 45: 22-27.
9. Kresovich, S., A.K. Szwew-McFadden, S.M. Bliek and J.R. McFerson. 1995. Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). Theor. Appl. Genet., 91: 206-211.
10. Lagercrantz, U. 1998. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusion and frequent rearrangements. Genetics, 150: 1217-1228.
11. Lagercrantz, U. and D. Lydiate. 1996. Comparative genome mapping in Brassica. Genetics, 144: 1903-1910.
12. Landry, B.S., N. Hubert, R. Crete, M.S. Chiang, S.E. Lincoln and T. Etoh. 1992. A genetic map for Brassica oleracea based on RFLP markers detected with expressed DNA sequences and mapping of resistance genes to race 2 of Plasmodiophora brassicae (Wornin). Genome, 35: 409-420.
13. Lowe, A.J., A.E. Jones, A.F. Raybould, M. Trick, C.L. Moule and K.J. Edwards. 2002. Transferability and genome specificity of a new set of microsatellite primers among Brassica species of the U triangle. Mol. Ecol. Notes, 2: 7-11.
14. Lowe, A.J., C.L. Moule, M. Trick and K.J. Edwards. 2004. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor. Appl. Genet., 108: 1103-1112.
15. Melchinger, A.E. 1993. Use of RELP markers for analysis of genetic relationships among breeding materials and prediction of hybrid performances. In: International Crop Science I. Crop Science Society of America, Madison, Wisconsin, pp. 621-628.
16. Murray, M.G. and W.F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acid Res., 10: 4321-4325.
17. Nei, M. and W.H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Nat. Acad. Sci. USA, 76: 5269-5273.
18. Parkin, I.A.P., D.J. Lydiate and M. Trick. 2002. Assessing the level of collinearity between Arabidopsis thaliana and Brassica napus for A. thaliana chromosome 5. Genome, 45: 356-366.
19. Plieske, J. and D. Struss. 2001. Microsatellite markers for genome analysis in Brassica. I.: Development in Brassica napus and abundance in Brassicaceae species. Theor. Appl. Genet., 102: 689-694.
20. Quiros, C.F., F. Grellet, J. Sadowski, T. Suzuki, G. Li and T. Wroblewski. 2001. Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-CK1 chromosomal segment and related regions. Genetics, 157: 1321-1330.
21. Ryder, C.D., L.B. Smith, G.R. Teakle and G.J. King. 2001. Contrasting genome organization: Two regions of Brassica oleracea genome compared with collinear regions of Arabidopsis thaliana genome. Genome, 44: 808-817.
22. Sambrook, J., E.F. Frithsch and T. Maniatis. 1989. Molecular cloning: A laboratory manual. Cold Springs Harbor Lab. Press, New York.
23. Scheffler, J.A., A.G. Sharpe, H. Schmidt, P. Sperling, I.A.P. Parkin, D.J. Lydiate and F. Heinz. 1997. Desaturase multigene families of Brassica napus arose through genome duplication. Theor. Appl. Genet., 94: 583-591.
24. Somers, D.J., G. Rakow, V.K. Prabhu and R.D. Friesen. 2001. Identification of a major gene and RAPD marker for yellow seed coat colour in Brassica napus. Genome, 44: 1077-1082.
25. Song, K.M., J.Y. Suzuki, M.K. Slocum, P.H. Williams and T.C. Osborn. 1991. A linkage map of Brassica rapa synonym campestris based on restriction fragment length polymorphism loci. Theor. Appl. Genet., 82: 296-304.
26. Tautz, D. and M. Renz. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res., 25: 4127-4138.
27. Xiao, C., L. Wu and J.L. Wu. 1998. SSR heterogenic patterns of parents for marketing and predicting heterosis in rice breeding. Mol. Breed., 4: 263-268.