Litoreibacter albidus gen. nov., sp. nov. and Litoreibacter janthinus sp. nov., members of the class Alphaproteobacteria isolated from the seashore

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 1, 2011, Pages 148-154

  Romanenko, Lyudmila A ^a   Tanaka, Naoto ^b   Frolova, Galina M ^a   Svetashev, Vassilii I ^c   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^c INSTITUTE OF MARINE BIOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

AMINOPHOSPHOLIPID; AMPICILLIN; CARBENICILLIN; CARDIOLIPIN; CEFALEXIN; CEFAZOLIN; CHLORAMPHENICOL; ERYTHROMYCIN; FATTY ACID; GENTAMICIN; GLYCOLIPID; KANAMYCIN; LINCOMYCIN; LIPID; NALIDIXIC ACID; NEOMYCIN; OFLOXACIN; OLEANDOMYCIN; OXACILLIN; PENICILLIN G; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHOLIPID; POLYMYXIN; RIFAMPICIN; RNA 16S; STREPTOMYCIN; TETRACYCLINE; VANCOMYCIN;

ALPHAPROTEOBACTERIA; ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; DNA DNA HYBRIDIZATION; FATTY ACID ANALYSIS; GENE SEQUENCE; JAPAN; LITOREIBACTER ALBIDUS; LITOREIBACTER JANTHINUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; ROSEOBACTER; SEASHORE; SEDIMENT; SNAIL;

AEROBIOSIS; ANIMALS; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GASTROPODA; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RHODOBACTERACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

ALPHAPROTEOBACTERIA; GASTROPODA; NEGIBACTERIA; ROSEOBACTER; THALASSOBACTER; UMBONIUM COSTATUM;

EID: 78651429624     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.019513-0     Document Type: Article

References (36)

1. Arahal, D. R., Macián, M. C., Garay, E. & Pujalte, M. J. (2005). Thalassobius mediterraneus gen. nov., sp. nov., and reclassification of Ruegeria gelatinovorans as Thalassobius gelatinovorans comb. nov. Int J Syst Evol Microbiol 55, 2371-2376.
2. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
3. Boettcher, K. J., Geaghan, K. K., Maloy, A. P. & Barber, B. J. (2005). Roseovarius crassostreae sp. nov., a member of the Roseobacter clade and the apparent cause of juvenile oyster disease (JOD) in cultured Eastern oysters. Int J Syst Evol Microbiol 55, 1531-1537.
4. Buchan, A., Gonzalez, J. M. & Moran, M. A. (2005). Overview of the marine Roseobacter lineage. Appl Environ Microbiol 71, 5665-5677.
5. Choi, D. H. & Cho, B. C. (2006). Shimia marina gen. nov., sp. nov., a novel bacterium of the Roseobacter clade isolated from biofilm in a coastal fish farm. Int J Syst Evol Microbiol 56, 1869-1873.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229. (Pubitemid 19175038)
7. Garrity, G. M., Bell, J. A. & Lilburn, T. (2005). Order III. Rhodobacterales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2C, p. 161. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. Garrity, G. M., Bell, J. A. & Lilburn, T. (2006). Order III. Rhodobacterales ord. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation list no. 107. Int J Syst Evol Microbiol 56, 1-6.
9. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) (1994). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
10. Hwang, C. Y., Bae, G. D., Yih, W. & Cho, B. C. (2009). Marivita cryptomonadis gen. nov., sp. nov. and Marivita litorea sp. nov., of the family Rhodobacteraceae, isolated from marine habitats. Int J Syst Evol Microbiol 59, 1568-1575.
11. Kim, B. Y., Weon, H. Y., Son, J. A., Lee, C. M., Hong, S. B., Jeon, Y. A., Koo, B. S. & Kwon, S. W. (2009). Thalassobacter arenae sp. nov., isolated from sea sand in Korea. Int J Syst Evol Microbiol 59, 487-490.
12. Lafay, B., Ruimy, R., Rausch de Traubenberg, C., Breittmayer, V., Gauthier, M. J. & Christen, R. (1995). Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxinproducing dinoflagellate Prorocentrum lima. Int J Syst Bacteriol 45, 290-296.
13. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
14. Lyman, J. & Fleming, R. H. (1940). Composition of sea water. J Mar Res 3, 1183-1184.
15. Macián, M. C., Arahal, D. R., Garay, E., Ludwig, W., Schleifer, K. H. & Pujalte, M. J. (2005). Thalassobacter stenotrophicus gen. nov., sp. nov., a novel marine a-proteobacterium isolated from Mediterranean sea water. Int J Syst Evol Microbiol 55, 105-110. (Pubitemid 40185482)
16. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
17. Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B. J. & Brinkhoff, T. (2006). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera. Int J Syst Evol Microbiol 56, 1293-1304.
18. Owen, R. J., Hill, L. R. & Lapage, S. P. (1969). Determination of DNA base composition from melting profiles in dilute buffers. Biopolymers 7, 503-516.
19. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
20. Pujalte, M. J., Macián, M. C., Arahal, D. R. & Garay, E. (2005). Thalassobacter stenotrophicus Macián et al. 2005 is a later synonym of Jannaschia cystaugens Adachi et al. 2004, with emended description of the genus Thalassobacter. Int J Syst Evol Microbiol 55, 1959-1963.
21. Romanenko, L. A., Schumann, P., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2004). Reinekea marinisedimentorum gen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. Int J Syst Evol Microbiol 54, 669-673.
22. Romanenko, L. A., Uchino, M., Falsen, E., Frolova, G. M., Zhukova, N. V. & Mikhailov, V. V. (2005). Pseudomonas pachastrellae sp. nov., isolated from a marine sponge. Int J Syst Evol Microbiol 55, 919-924.
23. Ruiz-Ponte, C., Cilia, V., Lambert, C. & Nicolas, J. L. (1998). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus. Int J Syst Bacteriol 48, 537-542. (Pubitemid 28272411)
24. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298. (Pubitemid 27163888)
25. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
26. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA 4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882. (Pubitemid 28022245)
28. Uchino, Y., Hirata, A., Yokota, A. & Sugiyama, J. (1998). Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. J Gen Appl Microbiol 44, 201-210.
29. Uchino, Y., Hirata, A., Yokota, A. & Sugiyama, J. (1999). Ruegeria algicola comb. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 68. Int J Syst Bacteriol 49, 1-3.
30. Vaskovsky, V. E. & Terekhova, T. A. (1979). HPTLC of phospholipid mixtures containing phosphatidylglycerol. J High Resol Chromatogr Chromatogr Comm 2, 671-672.
31. Wagner-Döbler, I., Rheims, H., Felske, A., Pukall, R. & Tindall, B. J. (2003). Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea. Int J Syst Evol Microbiol 53, 731-738.
32. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
33. Yoon, J. H., Kang, S. J. & Oh, T. K. (2007a). Donghicola eburneus gen. nov., sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 73-76. (Pubitemid 46156605)
34. Yoon, J. H., Kang, S. J. & Oh, T. K. (2007b). Sulfitobacter marinus sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 302-305. (Pubitemid 46306455)
35. Yoon, J. H., Lee, S. Y., Kang, S. J., Lee, C. H. & Oh, T. K. (2007c). Pseudoruegeria aquimaris gen. nov., sp. nov., isolated from seawater of the East Sea in Korea. Int J Syst Evol Microbiol 57, 542-547. (Pubitemid 46442145)
36. Yoon, J. H., Kang, S. J., Park, S. & Oh, T. K. (2007d). Jannaschia donghaensis sp. nov., isolated from seawater of the East Sea, Korea. Int J Syst Evol Microbiol 57, 2132-2136.