Coarse-grained molecular dynamics simulations of shear-induced instabilities of lipid bilayer membranes in water

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 82, Issue 5, 2010, Pages

  Hanasaki, Itsuo ^a,d   Walther, Jens H ^b,c   Kawano, Satoyuki ^a   Koumoutsakos, Petros ^b  

^a OSAKA UNIVERSITY   (Japan)

^b ETH ZURICH   (Switzerland)

^c TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^d KOBE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COARSE-GRAINED MOLECULAR DYNAMICS SIMULATIONS; CRITICAL VALUE; DIFFERENT GEOMETRY; DIFFERENT MODES; HELMHOLTZ; LIPID BILAYER MEMBRANES; MEMBRANE RUPTURE; RELATIVE IMPORTANCE; SHEAR RATES; STRUCTURAL CHANGE;

LIPID BILAYERS; MOLECULAR DYNAMICS; SHEAR DEFORMATION;

MEMBRANES;

EID: 78651350258     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.82.051602     Document Type: Article

References (29)

1. A. Y. Fu, C. Spence, A. Scherer, F. H. Arnold, and S. R. Quake, Nat. Biotechnol. 17, 1109 (1999). 10.1038/15095
2. J. C. Lasheras, Annu. Rev. Fluid Mech. 39, 293 (2007). 10.1146/annurev.fluid.39.050905.110128
3. J. Folkman, Annu. Rev. Med. 57, 1 (2006). 10.1146/annurev.med.57.121304. 131306
4. J. M. Rutkowski and M. A. Swartz, Trends Cell Biol. 17, 44 (2007). 10.1016/j.tcb.2006.11.007
5. J. de Jong, R. G. H. Lammertink, and M. Wessling, Lab Chip 6, 1125 (2006). 10.1039/b603275c
6. D. M. Hallow, R. A. Seeger, P. P. Kamaev, G. R. Prado, M. C. LaPlaca, and M. R. Prausnitz, Biotechnol. Bioeng. 99, 846 (2008). 10.1002/bit.21651
7. T. Schlick, R. D. Skeel, A. T. Brunger, L. V. Kalé, J. A. Board, Jr., J. Hermans, and K. Schulten, J. Comput. Phys. 151, 9 (1999). 10.1006/jcph.1998.6182
8. A. Arkhipov, P. L. Freddolino, K. Imada, K. Namba, and K. Schulten, Biophys. J. 91, 4589 (2006). 10.1529/biophysj.106.093443
9. S. J. Marrink, A. H. de Vries, and A. E. Mark, J. Phys. Chem. B 108, 750 (2004). 10.1021/jp036508g
10. C. F. Lopez, P. B. Moore, J. C. Shelley, M. Y. Shelley, and M. L. Klein, Comput. Phys. Commun. 147, 1 (2002). 10.1016/S0010-4655(02)00195-9
11. U. Seifert, Adv. Phys. 46, 13 (1997). 10.1080/00018739700101488
12. R. Jahn and H. Grubmüller, Curr. Opin. Cell Biol. 14, 488 (2002). 10.1016/S0955-0674(02)00356-3
13. Y. Kozlovsky and M. M. Kozlov, Biophys. J. 82, 882 (2002). 10.1016/S0006-3495(02)75450-7
14. S. J. Marrink, H. J. Risselada, S. Yefimov, D. P. Tieleman, and A. H. de Vries, J. Phys. Chem. B 111, 7812 (2007). 10.1021/jp071097f
15. R. Baron, D. Trzesniak, A. H. de Vries, A. Elsener, S. J. Marrink, and W. F. van Gunsteren, ChemPhysChem 8, 452 (2007). 10.1002/cphc.200600658
16. H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. DiNola, and J. R. Haak, J. Chem. Phys. 81, 3684 (1984). 10.1063/1.448118
17. E. M. Kotsalis, J. H. Walther, E. Kaxiras, and P. Koumoutsakos, Phys. Rev. E 79, 045701 (R) (2009). 10.1103/PhysRevE.79.045701
18. E. M. Kotsalis, I. Hanasaki, J. H. Walther, and P. Koumoutsakos, Comput. Math. Appl. 59, 2370 (2010). 10.1016/j.camwa.2009.08.054
19. J. H. Walther, T. Werder, R. L. Jaffe, and P. Koumoutsakos, Phys. Rev. E 69, 062201 (2004). 10.1103/PhysRevE.69.062201
20. W. Humphrey, A. Dalke, and K. Schulten, J. Mol. Graphics 14, 33 (1996). 10.1016/0263-7855(96)00018-5
21. D. J. Goldfarb, B. J. Glasser, and T. Shinbrot, Nature (London) 415, 302 (2002). 10.1038/415302a
22. M. P. Ciamarra, A. Coniglio, and M. Nicodemi, Phys. Rev. Lett. 94, 188001 (2005). 10.1103/PhysRevLett.94.188001
23. T. Soddemann, G. K. Auernhammer, H. Guo, B. Dünweg, and K. Kremer, Eur. Phys. J. E 13, 141 (2004). 10.1140/epje/e2004-00045-0
24. S. Koschoreck, S. Fujii, P. Lindner, and W. Richtering, Rheol. Acta 48, 231 (2009). 10.1007/s00397-008-0327-7
25. L. Pocivavsek, R. Dellsy, A. Kern, S. Johnson, B. Lin, K. Y. C. Lee, and E. Cerda, Science 320, 912 (2008). 10.1126/science.1154069
26. R. M. Jones, Buckling of Bars, Plates, and Shells (Bull Ridge Publishing, Blackburg, VA, 2006).
27. T. Tanzeglock, M. Soos, G. Stephanopoulos, and M. Morbidelli, Biotechnol. Bioeng. 104, 360 (2009). 10.1002/bit.22405
28. P. Jönsson, J. P. Beech, J. O. Tegenfeldt, and F. Höök, Langmuir 25, 6279 (2009). 10.1021/la8042268
29. V. Kantsler, E. Segre, and V. Steinberg, Phys. Rev. Lett. 99, 178102 (2007). 10.1103/PhysRevLett.99.178102