Proteomics-based analysis of novel genes involved in response toward soybean mosaic virus infection

Molecular Biology Reports

Volumn 38, Issue 1, 2011, Pages 511-521

  Yang, Hua ^a   Huang, Yanping ^a   Zhi, Haijian ^a   Yu, Deyue ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Proteomics; Soybean; Soybean mosaic virus; Two dimensional electrophoresis

Indexed keywords

MESSENGER RNA;

ARTICLE; CONTROLLED STUDY; DOWN REGULATION; ENERGY METABOLISM; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC ANALYSIS; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; METABOLIC REGULATION; MOSAIC VIRUS; NONHUMAN; PHOTOSYNTHESIS; PLANT IMMUNITY; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; SOYBEAN; TWO DIMENSIONAL ELECTROPHORESIS; UPREGULATION; VIRAL PLANT DISEASE;

AMINO ACID SEQUENCE; ELECTROLYTES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ENERGY METABOLISM; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; RNA, PLANT; SIGNAL TRANSDUCTION; SILVER STAINING; SOYBEANS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TRANSCRIPTION, GENETIC;

GLYCINE MAX; SOYBEAN MOSAIC VIRUS;

EID: 78651259230     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0135-x     Document Type: Article

References (52)

1. QL Du WZ Cui CH Zhang DY Yu 2010 GmRFP1 encodes a previously unknown RING-type E3 ubiquitin ligase in Soybean (Glycine max) Mol Biol Rep 37 2 685 693 1:CAS:528:DC%2BC3cXisFSitA%3D%3D 10.1007/s11033-009-9535-1 19373563
2. Hartman G L, Sinclair J B, Rupe J C (1999) Compendium of soybean diseases, vol i-vi, 4th edn. APS Press, St. Paul, pp 1-100
3. MW Gardner H Kendrick 1921 Soybean mosaic J Agric Res 22 111 114
4. C Zheng P Chen R Gergerich 2005 Characterization of resistance to Soybean mosaic virus in diverse soybean germplasm Crop Sci 45 2503 2509 10.2135/cropsci2005.0114 (Pubitemid 41567521)
5. L Liao P Chen GR Buss Q Yang SA Tolin 2002 Inheritance and allelism of resistance to Soybean mosaic virus in Zao18 soybean from China J Hered 93 447 452 1:CAS:528:DC%2BD3sXivVOktbY%3D 10.1093/jhered/93.6.447 12642647 (Pubitemid 36268522)
6. M Babu A Gagarinova J Brandle A Wang 2008 Association of the transcriptional response of soybean plants with soybean mosaic virus systemic infection J Gen Virol 89 1069 1080 1:CAS:528:DC%2BD1cXks1amurs%3D 10.1099/vir.0.83531-0 18343851
7. J Casado-Vela S Selles R Martinez 2006 Proteomic analysis of tobacco mosaic virus-infected tomato (Lycopersicon esculentum M.) fruits and detection of viral coat protein Proteomics 6 S196 S206 10.1002/pmic.200500317 16534742
8. S Golem J Culver 2003 Tobacco mosaic virus induced alterations in the gene expression profile of Arabidopsis thaliana Mol Plant Microbe Interact 16 681 688 1:CAS:528:DC%2BD3sXlvF2it78%3D 10.1094/MPMI.2003.16.8.681 12906112
9. Z Liu X Yang Y Fu Y Zhang J Yan T Song T Rocheford J Li 2009 Proteomic analysis of early germs with high-oil and normal inbred lines in maize Mol Biol Rep 36 4 813 821 1:CAS:528:DC%2BD1MXisFSkt7w%3D 10.1007/s11033-008-9250-3 18523866
10. H Zhu YD Bi LJ Yu DD Guo BC Wang 2009 Comparative proteomic analysis of apomictic monosomic addition line of Beta corolliflora and Beta vulgaris L. in sugar beet Mol Biol Rep 36 8 2093 2098 1:CAS:528:DC%2BD1MXht1yrs7jP 10.1007/s11033-008-9421-2 19107576
11. RJ Ni Z Shen CP Yang YD Wu YD Bi BC Wang 2010 Identification of low abundance polyA-binding proteins in Arabidopsis chloroplast using polyA-affinity column Mol Biol Rep 37 2 637 641 1:CAS:528:DC%2BC3cXisV2ktg%3D%3D 10.1007/s11033-009-9478-6 19288221
12. Y Jiang MK Deyholos 2006 Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes BMC Plant Biol 6 25 10.1186/1471-2229-6-25 17038189 (Pubitemid 44631342)
13. M Ventelon-Debout F Delalande J Brizard H Diemer A Van Dorsselaer C Brugidou 2004 Proteome analysis of cultivar-specific deregulations of Oryza sativa indica and O. sativa japonica cellular suspensions undergoing rice yellow mottle virus infection Proteomics 4 216 225 1:CAS:528:DC%2BD2cXhtVamu74%3D 10.1002/pmic.200300502 14730683 (Pubitemid 38140886)
14. C Xu J Sullivan W Garrett T Caperna S Natarajan 2008 Impact of solar ultraviolet-B on the proteome in soybean lines differing in flavonoid contents Phytochemistry 69 38 48 1:CAS:528:DC%2BD2sXhsVOks7jO 10.1016/j.phytochem.2007. 06.010 17645898 (Pubitemid 350256779)
15. D Guo H Zhi Y Wang J Gai X Zhou C Yang 2005 Identification and distribution of strains of soybean mosaic virus in middle and northern of Huang Huai Region of China Soybean Sci 27 64 68
16. XC Sun CX Hu QL Tan 2006 Effects of molybdenum on antioxidative defense system and membrane lipid peroxidation in winter wheat under low temperature stress J Plant Physiol Mol 32 175 182 1:CAS:528:DC%2BD2sXnt1ehs7s%3D
17. F Alferez L Pozo J Burns 2006 Physiological changes associated with senescence and abscission in mature citrus fruit induced by 5-chloro-3-methyl-4- nitro-1H-pyrazole and ethephon application Physiol Plant 127 66 73 1:CAS:528:DC%2BD28XksleqtL4%3D 10.1111/j.1399-3054.2006.00642.x
18. S Natarajan CP Xu TJ Caperna WA Garret 2005 Comparison of protein solubilization methods suitable for proteomic analysis of soybean seed proteins Anal Biochem 342 214 220 1:CAS:528:DC%2BD2MXlvVWrs7k%3D 10.1016/j.ab.2005.04.046 15953580 (Pubitemid 40884569)
19. MM Bradford 1976 A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal Biochem 72 248 254 1:CAS:528:DyaE28XksVehtrY%3D 10.1016/0003-2697(76)90527- 3 942051
20. JX Yan R Wait T Berkelman RA Harry JA Westbrook CH Wheeler MJ Dunn 2000 A modified silver staining protocol for visualization of proteins compatible with matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry Electrophoresis 21 3666 3672 1:CAS:528:DC%2BD3cXos1SntL8%3D 10.1002/1522-2683(200011)21:17<3666::AID-ELPS3666>3.0.CO;2-6 11271485
21. S Pennazio C Sapetti 1982 Electrolyte leakage in relation to viral and abiotic stresses inducing necrosis in cowpea leaves Biologia Plantarum 24 218 225 1:CAS:528:DyaL38XkvVyqsLw%3D 10.1007/BF02883667
22. KD Odlum TJ Blake 1996 A comparison of analytical approaches for assessing freezing damage in black spruce using electrolyte leakage methods Can J Bot 74 952 958 10.1139/b96-118
23. M Bevan I Bancroft E Bent, et al. 1998 Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana Nature 391 485 488 1:CAS:528:DyaK1cXhtVCjtr4%3D 10.1038/35140 9461215 (Pubitemid 28086548)
24. R Holmes-Davis CK Tanaka WH Vensel WJ Hurkman S McCormick 2005 Proteome mapping of mature pollen of Arabidopsis thaliana Proteomics 5 4864 4884 1:CAS:528:DC%2BD28XktlemsQ%3D%3D 10.1002/pmic.200402011 16247729 (Pubitemid 43016906)
25. L Van Loon 1987 Disease induction by plant viruses Adv Virus Res 33 205 256 10.1016/S0065-3527(08)60319-X 3296694
26. A Portis M Parry 2007 Discoveries in Rubisco (ribulose 1, 5-bisphosphate carboxylase/oxygenase): a historical perspective Photosynth Res 94 121 143 1:CAS:528:DC%2BD2sXptlKhtrk%3D 10.1007/s11120-007-9225-6 17665149 (Pubitemid 47310307)
27. FJ Corpas JB Barroso LM Sandalio JM Palma JA Lupianez LA Del Rio 1999 Peroxisomal NADP-dependent isocitrate dehydrogenase. Characterization and activity regulation during natural senescence Plant Physiol 121 921 928 1:CAS:528:DyaK1MXns12ntb8%3D 10.1104/pp.121.3.921 10557241
28. RJ Devenish M Prescott X Roucou P Nagley 2000 Insights into ATP synthase assembly and function through the molecular genetic manipulation of subunits of the yeast mitochondrial enzyme complex Biochim Biophys Acta 1458 428 442 1:CAS:528:DC%2BD3cXjs1CntLk%3D 10.1016/S0005-2728(00)00092-X 10838056 (Pubitemid 30320723)
29. Y Jia L Xue J Li H Liu 2010 Isolation and proteomic analysis of the halotolerant alga Dunaliella salina flagella using shotgun strategy Mol Biol Rep 37 2 711 716 1:CAS:528:DC%2BC3cXisFShtg%3D%3D 10.1007/s11033-009-9563-x 19437132
30. A Tarze A Deniaud M Le Bras E Maillier D Molle N Larochette N Zamzami G Jan G Kroemer C Brenner 2007 GAPDH, a novel regulator of the pro-apoptotic mitochondrial membrane permeabilization Oncogene 26 2606 2620 1:CAS:528:DC%2BD2sXktlOiurs%3D 10.1038/sj.onc.1210074 17072346 (Pubitemid 46632015)
31. K Hahlbrock D Scheel 1989 Physiology and molecular biology of phenylpropanoid metabolism Annu Rev Plant Physiol Plant Mol Biol 40 347 369 1:CAS:528:DyaL1MXktlKmu74%3D 10.1146/annurev.pp.40.060189.002023
32. RA Dixon 2001 Natural products and plant disease resistance Nature 411 843 847 1:CAS:528:DC%2BD3MXksF2nsr4%3D 10.1038/35081178 11459067 (Pubitemid 32588112)
33. G Shadle S Wesley K Korth F Chen C Lamb R Dixon 2003 Phenylpropanoid compounds and disease resistance in transgenic tobacco with altered expression of L-phenylalanine ammonia-lyase Phytochemistry 64 153 161 1:CAS:528: DC%2BD3sXms1Okurk%3D 10.1016/S0031-9422(03)00151-1 12946414 (Pubitemid 37101801)
34. K Apel H Hirt 2004 Reactive oxygen species: metabolism, oxidative stress, and signal transduction Annu Rev Plant Biol 55 373 399 1:CAS:528: DC%2BD2cXlvFeisL0%3D 10.1146/annurev.arplant.55.031903.141701 15377225 (Pubitemid 38940937)
35. Y Jiang MK Deyholos 2006 Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes BMC Plant Biol 6 25 10.1186/1471-2229-6-25 17038189 (Pubitemid 44631342)
36. JA Kreps YJ Wu HS Chang T Zhu X Wang JF Harper 2002 Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress Plant Physiol 130 2129 2141 1:CAS:528:DC%2BD3sXktlym 10.1104/pp.008532 12481097 (Pubitemid 36035209)
37. M Seki M Narusaka J Ishida, et al. 2002 Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray Plant J 31 279 292 1:CAS:528:DC%2BD38XntFelsLg%3D 10.1046/j.1365-313X.2002.01359.x 12164808 (Pubitemid 34922963)
38. I Feussner C Wasternack 2002 The lipoxygenase pathway Annu Rev Plant Biol 53 275 297 1:CAS:528:DC%2BD38XlsVWhur4%3D 10.1146/annurev.arplant.53.100301. 135248 12221977 (Pubitemid 36257496)
39. J Shah 2005 Lipids, lipases, and lipid-modifying enzymes in plant disease resistance Annu Rev Phytopathol 43 229 260 1:CAS:528:DC%2BD2MXhtVOksrrP 10.1146/annurev.phyto.43.040204.135951 16078884 (Pubitemid 41318872)
40. K Croft F Juttner A Slusarenko 1993 Volatile products of the lipoxygenase pathway evolved from Phaseolus vulgaris (L.) leaves inoculated with Pseudomonas syringae pv phaseolicola Am Soc Plant Biol 101 13 24 1:CAS:528: DyaK3sXnslagsw%3D%3D
41. C Rusterucci JL Montillet JP Agnel, et al. 1999 Involvement of lipoxygenase dependent production of fatty acid hydroperoxides in the dependent production of the hypersensitive cell death induced by cryptogein on tobacco leaves J Biol Chem 274 36446 36447 1:CAS:528:DC%2BD3cXit1Wj 10.1074/jbc.274.51. 36446 10593941 (Pubitemid 30005252)
42. LY Li H Cheng JY Gai DY Yu 2007 Genome-wide identification and characterization of putative cytochrome P450 genes in the model legume Medicago truncatula Planta 226 109 123 1:CAS:528:DC%2BD2sXltlSktbc%3D 10.1007/s00425-006-0473-z 17273868 (Pubitemid 46763831)
43. M Morant S Bak BL Moller D Werck-Rsichhart 2003 Plant cytochrome P450: tool for pharmacology, plant protection and phytoremediation Curr Opin Biotech 14 151 162 1:CAS:528:DC%2BD3sXjsVGlurY%3D 10.1016/S0958-1669(03)00024-7 12732316 (Pubitemid 36561228)
44. K Senthil NG Wasnik YJ Kim DC Yang 2009 Generation and analysis of expressed sequence tags from leaf and root of Withania somnifera (Ashwgandha) Mol Biol Rep 37 2 893 902 10.1007/s11033-009-9696-y 19669665
45. J Smalle RD Vierstra 2004 The ubiquitin 26S proteasome proteolytic pathway Annu Rev Plant Biol 55 555 590 1:CAS:528:DC%2BD2cXlvFeisb4%3D 10.1146/annurev.arplant.55.031903.141801 15377232 (Pubitemid 38940944)
46. J Sullivan K Shirasu X Deng 2003 The diverse roles of ubiquitin and the 26S proteasome in the life of plants Nat Rev Genet 4 948 958 1:CAS:528:DC%2BD3sXptFait7c%3D 10.1038/nrg1228 14631355 (Pubitemid 37474642)
47. C Reichel R Beachy 2000 Degradation of tobacco mosaic virus movement protein by the 26S proteasome J Virol 74 3330 3337 1:CAS:528: DC%2BD3cXhvVejtbg%3D 10.1128/JVI.74.7.3330-3337.2000 10708450 (Pubitemid 30143758)
48. L Suty J Lequeu A Lanon P Etienne A Petitot J Blein 2003 Preferential induction of 20S proteasome subunits during elicitation of plant defense reactions: towards the characterization of "plant defense proteasomes" Int J Biochem Cell Biol 35 637 650 1:CAS:528:DC%2BD3sXisFShtLg%3D 10.1016/S1357-2725(02)00386-2 12672456 (Pubitemid 36369512)
49. L Ballut M Drucker M Pugniere, et al. 2005 Hc-Pro, a multifunctional protein encoded by a plant RNA virus, targets the 20S proteasome and affects its enzymic activities J Gen Virol 86 2595 2603 1:CAS:528:DC%2BD2MXps1Ogu7o%3D 10.1099/vir.0.81107-0 16099919 (Pubitemid 41167608)
50. MJ Droillard J Guclu JP LeCaer Y Mathieu J Guern C Lauriere 1997 Identification of calreticulin-like protein as one of the phosphoproteins modulated in response to oligogalacturonides in tobacco cells Planta 202 341 348 1:CAS:528:DyaK2sXksVeis7o%3D 10.1007/s004250050136 9232905
51. J Denecke L Carlsson S Vidal A Hoglund B Ek M Van Zeijl K Sinjorgo E Palva 1995 The tobacco homolog of mammalian calreticulin is present in protein complexes in vivo Plant Cell 7 391 406 1:CAS:528:DyaK2MXlt1yhsro%3D 10.1105/tpc.7.4.391 7773014
52. MH Chen GW Tian Y Gafni V Citovsky 2005 Effects of calreticulin on viral cell-to-cell movement Plant Physiol 138 1866 1876 1:CAS:528:DC%2BD2MXps12lsrw%3D 10.1104/pp.105.064386 16006596 (Pubitemid 43733534)