Single isomorphous replacement phasing of selenomethionine-containing proteins using UV-induced radiation damage

Acta Crystallographica Section D: Biological Crystallography

Volumn 67, Issue 1, 2011, Pages 32-44

  Panjikar, Santosh ^a   Mayerhofer, Hubert ^a   Tucker, Paul A ^a   Mueller Dieckmann, Jochen ^a   De Sanctis, Daniele ^b  

^a DESY   (Germany)

^b EUROPEAN SYNCHROTRON RADIATION FACILITY   (France)

Author keywords

experimental phasing; ID23 1; radiation damage; UV RIP

Indexed keywords

BACTERIAL PROTEIN; SELENOMETHIONINE;

ARTICLE; CHEMISTRY; GRAM POSITIVE BACTERIUM; METHODOLOGY; ULTRAVIOLET RADIATION; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; GRAM-POSITIVE BACTERIA; SELENOMETHIONINE; ULTRAVIOLET RAYS;

EID: 78651106542     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S090744491004299X     Document Type: Article

References (41)

1. Abbani, M. A., Papagiannis, C. V., Sam, M. D., Cascio, D., Johnson, R. C. & Clubb, R. T. (2007). Proc. Natl Acad. Sci. USA, 104, 2109-2114.
2. Banumathi, S., Zwart, P. H., Ramagopal, U. A., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1085-1093.
3. Bourenkov, G. P. & Popov, A. N. (2010). Acta Cryst. D66, 409-419.
4. Bragg, W. L. & Perutz, M. F. (1954). Proc. R. Soc. Lond. A, 225, 315-329.
5. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
6. Dose, K. (1968). Photochem. Photobiol. 8, 331-335.
7. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
8. Evans, G., Polentarutti, M., Djinovic Carugo, K. & Bricogne, G. (2003). Acta Cryst. D59, 1429-1434.
9. French, S. & Wilson, K. (1978). Acta Cryst. A34, 517-525.
10. Fütterer, K., Ravelli, R. B. G., White, S. A., Nicoll, A. J. & Allemann, R. K. (2008). Acta Cryst. D64, 264-272.
11. Gabadinho, J. et al. (2010). J. Synchrotron Rad. 17, 700-707.
12. Garman, E. F. (2010). Acta Cryst. D66, 339-351.
13. Giordano, A., Russo, C., Raja, C. A., Kuznetsova, I. M., Stepanenko, O. V. & Turoverov, K. K. (2004). J. Proteome Res. 3, 613-620.
14. Hendrickson, W. A. (1991). Science, 254, 51-58.
15. Holton, J. M. (2009). J. Synchrotron Rad. 16, 133-142.
16. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
17. Kehoe, J. J., Remondetto, G E., Subirade, M., Morris, E. R. & Brodkorb, A. (2008). J. Agric. Food Chem. 56, 4720-4725.
18. Murshudov, G N., Vagin, A. A., Lebedev, A., Wilson, K. S. & Dodson, E. J. (1999). Acta Cryst. D55, 247-255.
19. Nanao, M. H. & Ravelli, R. B. G (2006). Structure, 14, 791-800.
20. Nanao, M. H., Sheldrick, G M. & Ravelli, R. B. G (2005). Acta Cryst. D61, 1227-1237.
21. Nurizzo, D., Mairs, T., Guijarro, M., Rey, V., Meyer, J., Fajardo, P, Chavanne, J., Biasci, J.-C., McSweeney, S. & Mitchell, E. (2006). J. Synchrotron Rad. 13, 227-238.
22. Ogata, C. M. (1998). Nature Struct. Biol. 5, Suppl., 638-640.
23. Olmo, R., Dolores, B., Socorro, J. M., Martin, J. A. & Teijon, J. M. (2001). J. Enzyme Inhib. 16, 65-80.
24. Paithankar, K. S. & Garman, E. F (2010). Acta Cryst. D66, 381-388.
25. Permyakov, E. A. (1993). Luminescent Spectroscopy of Proteins. Boca Raton: CRC Press.
26. Perrakis, A., Morris, R. & Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
27. Prates, J. A. M., Tarbouriech, N., Charnock, S. J., Fontes, C. M. G A., Ferreira, L. M. A. & Davies, G J. (2001). Structure, 9, 1183-1190.
28. Ramagopal, U. A., Dauter, Z., Thirumuruhan, R., Fedorov, E. & Almo, S. C. (2005). Acta Cryst. D61, 1289-1298.
29. Ravelli, R. B. G., Leiros, H.-K. S., Pan, B., Caffrey, M. & McSweeney, S. (2003). Structure, 11, 217-224.
30. Ravelli, R. B. G & McSweeney, S. (2000). Structure, 8, 315-328.
31. Rudiño-Piñera, E., Ravelli, R. B. G., Sheldrick, G M., Nanao, M. H., Korostelev, V. V., Werner, J. M., Schwarz-Linek, U., Potts, J. R. & Garman, E. F. (2007). J. Mol. Biol. 368, 833-844.
32. Schiltz, M., Dumas, P., Ennifar, E., Flensburg, C., Paciorek, W., Vonrhein, C. & Bricogne, G (2004). Acta Cryst. D60, 1024-1031.
33. Schneider, T. R. & Sheldrick, G M. (2002). Acta Cryst. D58, 1772-1779.
34. Schönfeld, D. L., Ravelli, R. B. G., Mueller, U. & Skerra, A. (2008). J. Mol. Biol. 384, 393-405.
35. Sheldrick, G M. (2008). Acta Cryst. A64, 112-122.
36. Sheldrick, G. M. (2010). Acta Cryst. D66, 479-485.
37. Vernede, X., Lavault, B., Ohana, J., Nurizzo, D., Joly, J., Jacquamet, L., Felisaz, F., Cipriani, F. & Bourgeois, D. (2006). Acta Cryst. D62, 253-261.
38. Weiss, M. S., Mander, G., Hedderich, R., Diederichs, K., Ermler, U. & Warkentin, E. (2004). Acta Cryst. D60, 686-695.
39. Weljie, A. M. & Vogel, H. J. (2000). Protein Eng. 13, 59-60.
40. Zhang, M. & Vogel, H. J. (1994). Biochemistry, 33, 1163-1171.
41. Zwart, P. H., Banumathi, S., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1958-1963.