-
1
-
-
0025730640
-
A rapid micropreparation technique for extraction of DNA-binding proteins from limiting numbers of mammalian cells
-
Andrews N.C., Faller D.V. A rapid micropreparation technique for extraction of DNA-binding proteins from limiting numbers of mammalian cells. Nucleic Acids Res. 1991, 19:2499.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2499
-
-
Andrews, N.C.1
Faller, D.V.2
-
2
-
-
0028169992
-
HNF-3 beta is essential for node and notochord formation in mouse development
-
Ang S.L., Rossant J. HNF-3 beta is essential for node and notochord formation in mouse development. Cell 1994, 78:561-574.
-
(1994)
Cell
, vol.78
, pp. 561-574
-
-
Ang, S.L.1
Rossant, J.2
-
3
-
-
0027425136
-
The formation and maintenance of the definitive endoderm lineage in the mouse: involvement of HNF3/forkhead proteins
-
Ang S.L., Wierda A., Wong D., Stevens K.A., Cascio S., Rossant J., Zaret K.S. The formation and maintenance of the definitive endoderm lineage in the mouse: involvement of HNF3/forkhead proteins. Development 1993, 119:1301-1315.
-
(1993)
Development
, vol.119
, pp. 1301-1315
-
-
Ang, S.L.1
Wierda, A.2
Wong, D.3
Stevens, K.A.4
Cascio, S.5
Rossant, J.6
Zaret, K.S.7
-
4
-
-
68149129622
-
Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1
-
Avraham O., Hadas Y., Vald L., Zisman S., Schejter A., Visel A., Klar A. Transcriptional control of axonal guidance and sorting in dorsal interneurons by the Lim-HD proteins Lhx9 and Lhx1. Neural Dev. 2009, 4:21.
-
(2009)
Neural Dev.
, vol.4
, pp. 21
-
-
Avraham, O.1
Hadas, Y.2
Vald, L.3
Zisman, S.4
Schejter, A.5
Visel, A.6
Klar, A.7
-
5
-
-
10244257711
-
Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues
-
Besnard V., Wert S.E., Hull W.M., Whitsett J.A. Immunohistochemical localization of Foxa1 and Foxa2 in mouse embryos and adult tissues. Gene Expr. Patterns 2004, 5:193-208.
-
(2004)
Gene Expr. Patterns
, vol.5
, pp. 193-208
-
-
Besnard, V.1
Wert, S.E.2
Hull, W.M.3
Whitsett, J.A.4
-
6
-
-
14544271857
-
Sonic hedgehog guides commissural axons along the longitudinal axis of the spinal cord
-
Bourikas D., Pekarik V., Baeriswyl T., Grunditz A., Sadhu R., Nardo M., Stoeckli E.T. Sonic hedgehog guides commissural axons along the longitudinal axis of the spinal cord. Nat. Neurosci. 2005, 8:297-304.
-
(2005)
Nat. Neurosci.
, vol.8
, pp. 297-304
-
-
Bourikas, D.1
Pekarik, V.2
Baeriswyl, T.3
Grunditz, A.4
Sadhu, R.5
Nardo, M.6
Stoeckli, E.T.7
-
7
-
-
13344283332
-
Hedgehog signaling: from the Drosophila cuticle to anti-cancer drugs
-
Briscoe J., Therond P. Hedgehog signaling: from the Drosophila cuticle to anti-cancer drugs. Dev. Cell 2005, 8:143-151.
-
(2005)
Dev. Cell
, vol.8
, pp. 143-151
-
-
Briscoe, J.1
Therond, P.2
-
8
-
-
0033560895
-
Homeobox gene Nkx2.2 and specification of neuronal identity by graded Sonic hedgehog signalling
-
Briscoe J., Sussel L., Serup P., Hartigan-O'Connor D., Jessell T.M., Rubenstein J.L., Ericson J. Homeobox gene Nkx2.2 and specification of neuronal identity by graded Sonic hedgehog signalling. Nature 1999, 398:622-627.
-
(1999)
Nature
, vol.398
, pp. 622-627
-
-
Briscoe, J.1
Sussel, L.2
Serup, P.3
Hartigan-O'Connor, D.4
Jessell, T.M.5
Rubenstein, J.L.6
Ericson, J.7
-
9
-
-
0031009717
-
Axial (HNF3beta) and retinoic acid receptors are regulators of the zebrafish sonic hedgehog promoter
-
Chang B.E., Blader P., Fischer N., Ingham P.W., Strahle U. Axial (HNF3beta) and retinoic acid receptors are regulators of the zebrafish sonic hedgehog promoter. EMBO J. 1997, 16:3955-3964.
-
(1997)
EMBO J.
, vol.16
, pp. 3955-3964
-
-
Chang, B.E.1
Blader, P.2
Fischer, N.3
Ingham, P.W.4
Strahle, U.5
-
10
-
-
0037418830
-
The morphogen sonic hedgehog is an axonal chemoattractant that collaborates with netrin-1 in midline axon guidance
-
Charron F., Stein E., Jeong J., McMahon A.P., Tessier-Lavigne M. The morphogen sonic hedgehog is an axonal chemoattractant that collaborates with netrin-1 in midline axon guidance. Cell 2003, 113:11-23.
-
(2003)
Cell
, vol.113
, pp. 11-23
-
-
Charron, F.1
Stein, E.2
Jeong, J.3
McMahon, A.P.4
Tessier-Lavigne, M.5
-
11
-
-
0035977054
-
Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin
-
Chaya D., Hayamizu T., Bustin M., Zaret K.S. Transcription factor FoxA (HNF3) on a nucleosome at an enhancer complex in liver chromatin. J. Biol. Chem. 2001, 276:44385-44389.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 44385-44389
-
-
Chaya, D.1
Hayamizu, T.2
Bustin, M.3
Zaret, K.S.4
-
12
-
-
0033388099
-
An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA
-
Cirillo L.A., Zaret K.S. An early developmental transcription factor complex that is more stable on nucleosome core particles than on free DNA. Mol. Cell 1999, 4:961-969.
-
(1999)
Mol. Cell
, vol.4
, pp. 961-969
-
-
Cirillo, L.A.1
Zaret, K.S.2
-
13
-
-
0036184236
-
Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4
-
Cirillo L.A., Lin F.R., Cuesta I., Friedman D., Jarnik M., Zaret K.S. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol. Cell 2002, 9:279-289.
-
(2002)
Mol. Cell
, vol.9
, pp. 279-289
-
-
Cirillo, L.A.1
Lin, F.R.2
Cuesta, I.3
Friedman, D.4
Jarnik, M.5
Zaret, K.S.6
-
14
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks G.E., Hon G., Chandonia J.M., Brenner S.E. WebLogo: a sequence logo generator. Genome Res. 2004, 14:1188-1190.
-
(2004)
Genome Res.
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
15
-
-
33748805219
-
Predicting transcription factor binding sites using local over-representation and comparative genomics
-
Defrance M., Touzet H. Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC Bioinform. 2006, 7:396.
-
(2006)
BMC Bioinform.
, vol.7
, pp. 396
-
-
Defrance, M.1
Touzet, H.2
-
16
-
-
0037621506
-
Zic1 represses Math1 expression via interactions with the Math1 enhancer and modulation of Math1 autoregulation
-
Ebert P.J., Timmer J.R., Nakada Y., Helms A.W., Parab P.B., Liu Y., Hunsaker T.L., Johnson J.E. Zic1 represses Math1 expression via interactions with the Math1 enhancer and modulation of Math1 autoregulation. Development 2003, 130:1949-1959.
-
(2003)
Development
, vol.130
, pp. 1949-1959
-
-
Ebert, P.J.1
Timmer, J.R.2
Nakada, Y.3
Helms, A.W.4
Parab, P.B.5
Liu, Y.6
Hunsaker, T.L.7
Johnson, J.E.8
-
17
-
-
0027756145
-
Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity
-
Echelard Y., Epstein D.J., St-Jacques B., Shen L., Mohler J., McMahon J.A., McMahon A.P. Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell 1993, 75:1417-1430.
-
(1993)
Cell
, vol.75
, pp. 1417-1430
-
-
Echelard, Y.1
Epstein, D.J.2
St-Jacques, B.3
Shen, L.4
Mohler, J.5
McMahon, J.A.6
McMahon, A.P.7
-
18
-
-
0032915095
-
Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms
-
Epstein D.J., McMahon A.P., Joyner A.L. Regionalization of Sonic hedgehog transcription along the anteroposterior axis of the mouse central nervous system is regulated by Hnf3-dependent and -independent mechanisms. Development 1999, 126:281-292.
-
(1999)
Development
, vol.126
, pp. 281-292
-
-
Epstein, D.J.1
McMahon, A.P.2
Joyner, A.L.3
-
19
-
-
0025257143
-
Analysis of cis-acting requirements of the Rh3 and Rh4 genes reveals a bipartite organization to rhodopsin promoters in Drosophila melanogaster
-
Fortini M.E., Rubin G.M. Analysis of cis-acting requirements of the Rh3 and Rh4 genes reveals a bipartite organization to rhodopsin promoters in Drosophila melanogaster. Genes Dev. 1990, 4:444-463.
-
(1990)
Genes Dev.
, vol.4
, pp. 444-463
-
-
Fortini, M.E.1
Rubin, G.M.2
-
20
-
-
0038297111
-
Joint regulation of the MAP1B promoter by HNF3beta/Foxa2 and Engrailed is the result of a highly conserved mechanism for direct interaction of homeoproteins and Fox transcription factors
-
Foucher I., Montesinos M.L., Volovitch M., Prochiantz A., Trembleau A. Joint regulation of the MAP1B promoter by HNF3beta/Foxa2 and Engrailed is the result of a highly conserved mechanism for direct interaction of homeoproteins and Fox transcription factors. Development 2003, 130:1867-1876.
-
(2003)
Development
, vol.130
, pp. 1867-1876
-
-
Foucher, I.1
Montesinos, M.L.2
Volovitch, M.3
Prochiantz, A.4
Trembleau, A.5
-
21
-
-
3242891068
-
VISTA: computational tools for comparative genomics
-
Frazer K.A., Pachter L., Poliakov A., Rubin E.M., Dubchak I. VISTA: computational tools for comparative genomics. Nucleic Acids Res. 2004, 32:W273-279.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Frazer, K.A.1
Pachter, L.2
Poliakov, A.3
Rubin, E.M.4
Dubchak, I.5
-
22
-
-
58049204234
-
Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development
-
Gao N., LeLay J., Vatamaniuk M.Z., Rieck S., Friedman J.R., Kaestner K.H. Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development. Genes Dev. 2008, 22:3435-3448.
-
(2008)
Genes Dev.
, vol.22
, pp. 3435-3448
-
-
Gao, N.1
LeLay, J.2
Vatamaniuk, M.Z.3
Rieck, S.4
Friedman, J.R.5
Kaestner, K.H.6
-
23
-
-
33645472806
-
New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences
-
Gomez-Skarmeta J.L., Lenhard B., Becker T.S. New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences. Dev. Dyn. 2006, 235:870-885.
-
(2006)
Dev. Dyn.
, vol.235
, pp. 870-885
-
-
Gomez-Skarmeta, J.L.1
Lenhard, B.2
Becker, T.S.3
-
24
-
-
0027018236
-
A series of normal stages in the development of the chick embryo. 1951
-
Hamburger V., Hamilton H.L. A series of normal stages in the development of the chick embryo. 1951. Dev. Dyn. 1992, 195:231-272.
-
(1992)
Dev. Dyn.
, vol.195
, pp. 231-272
-
-
Hamburger, V.1
Hamilton, H.L.2
-
25
-
-
0034284481
-
Conserved noncoding sequences are reliable guides to regulatory elements
-
Hardison R.C. Conserved noncoding sequences are reliable guides to regulatory elements. Trends Genet. 2000, 16:369-372.
-
(2000)
Trends Genet.
, vol.16
, pp. 369-372
-
-
Hardison, R.C.1
-
26
-
-
21644470944
-
Sequential roles for Mash1 and Ngn2 in the generation of dorsal spinal cord interneurons
-
Helms A., Battiste J., Henke R., Nakada Y., Simplicio N., Guillemot F., Johnson J. Sequential roles for Mash1 and Ngn2 in the generation of dorsal spinal cord interneurons. Development 2005, 132:2709-2719.
-
(2005)
Development
, vol.132
, pp. 2709-2719
-
-
Helms, A.1
Battiste, J.2
Henke, R.3
Nakada, Y.4
Simplicio, N.5
Guillemot, F.6
Johnson, J.7
-
27
-
-
77957219390
-
A simple method for site-directed mutagenesis using the polymerase chain reaction
-
Hemsley A., Arnheim N., Toney M.D., Cortopassi G., Galas D.J. A simple method for site-directed mutagenesis using the polymerase chain reaction. Nucleic Acids Res. 1989, 17:6545-6551.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 6545-6551
-
-
Hemsley, A.1
Arnheim, N.2
Toney, M.D.3
Cortopassi, G.4
Galas, D.J.5
-
28
-
-
0030795109
-
Control of cell pattern in the neural tube by the zinc finger transcription factor and oncogene Gli-1
-
Hynes M., Stone D.M., Dowd M., Pitts-Meek S., Goddard A., Gurney A., Rosenthal A. Control of cell pattern in the neural tube by the zinc finger transcription factor and oncogene Gli-1. Neuron 1997, 19:15-26.
-
(1997)
Neuron
, vol.19
, pp. 15-26
-
-
Hynes, M.1
Stone, D.M.2
Dowd, M.3
Pitts-Meek, S.4
Goddard, A.5
Gurney, A.6
Rosenthal, A.7
-
29
-
-
35548963457
-
Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis
-
Jacob J., Ferri A.L., Milton C., Prin F., Pla P., Lin W., Gavalas A., Ang S.L., Briscoe J. Transcriptional repression coordinates the temporal switch from motor to serotonergic neurogenesis. Nat. Neurosci. 2007, 10:1433-1439.
-
(2007)
Nat. Neurosci.
, vol.10
, pp. 1433-1439
-
-
Jacob, J.1
Ferri, A.L.2
Milton, C.3
Prin, F.4
Pla, P.5
Lin, W.6
Gavalas, A.7
Ang, S.L.8
Briscoe, J.9
-
30
-
-
0041508221
-
Distinct regulators of Shh transcription in the floor plate and notochord indicate separate origins for these tissues in the mouse node
-
Jeong Y., Epstein D.J. Distinct regulators of Shh transcription in the floor plate and notochord indicate separate origins for these tissues in the mouse node. Development 2003, 130:3891-3902.
-
(2003)
Development
, vol.130
, pp. 3891-3902
-
-
Jeong, Y.1
Epstein, D.J.2
-
31
-
-
33645073400
-
A functional screen for sonic hedgehog regulatory elements across a 1Mb interval identifies long-range ventral forebrain enhancers
-
Jeong Y., El-Jaick K., Roessler E., Muenke M., Epstein D.J. A functional screen for sonic hedgehog regulatory elements across a 1Mb interval identifies long-range ventral forebrain enhancers. Development 2006, 133:761-772.
-
(2006)
Development
, vol.133
, pp. 761-772
-
-
Jeong, Y.1
El-Jaick, K.2
Roessler, E.3
Muenke, M.4
Epstein, D.J.5
-
32
-
-
0034303585
-
Neuronal specification in the spinal cord: inductive signals and transcriptional codes
-
Jessell T.M. Neuronal specification in the spinal cord: inductive signals and transcriptional codes. Nat. Rev. Genet. 2000, 1:20-29.
-
(2000)
Nat. Rev. Genet.
, vol.1
, pp. 20-29
-
-
Jessell, T.M.1
-
33
-
-
0028344596
-
The HNF-3 gene family of transcription factors in mice: gene structure, cDNA sequence, and mRNA distribution
-
Kaestner K.H., Hiemisch H., Luckow B., Schutz G. The HNF-3 gene family of transcription factors in mice: gene structure, cDNA sequence, and mRNA distribution. Genomics 1994, 20:377-385.
-
(1994)
Genomics
, vol.20
, pp. 377-385
-
-
Kaestner, K.H.1
Hiemisch, H.2
Luckow, B.3
Schutz, G.4
-
34
-
-
19444383005
-
Strategies for characterising cis-regulatory elements in Xenopus
-
Khokha M.K., Loots G.G. Strategies for characterising cis-regulatory elements in Xenopus. Brief Funct. Genomic Proteomic. 2005, 4:58-68.
-
(2005)
Brief Funct. Genomic Proteomic.
, vol.4
, pp. 58-68
-
-
Khokha, M.K.1
Loots, G.G.2
-
35
-
-
29744437291
-
A novel role for the choroid plexus in BMP-mediated inhibition of differentiation of cerebellar neural progenitors
-
Krizhanovsky V., Ben-Arie N. A novel role for the choroid plexus in BMP-mediated inhibition of differentiation of cerebellar neural progenitors. Mech. Dev. 2006, 123:67-75.
-
(2006)
Mech. Dev.
, vol.123
, pp. 67-75
-
-
Krizhanovsky, V.1
Ben-Arie, N.2
-
36
-
-
33646886593
-
Math1 target genes are enriched with evolutionarily conserved clustered E-box binding sites
-
Krizhanovsky V., Soreq L., Kliminski V., Ben-Arie N. Math1 target genes are enriched with evolutionarily conserved clustered E-box binding sites. J. Mol. Neurosci. 2006, 28:211-229.
-
(2006)
J. Mol. Neurosci.
, vol.28
, pp. 211-229
-
-
Krizhanovsky, V.1
Soreq, L.2
Kliminski, V.3
Ben-Arie, N.4
-
37
-
-
0026083212
-
Hepatocyte nuclear factor 3 alpha belongs to a gene family in mammals that is homologous to the Drosophila homeotic gene fork head
-
Lai E., Prezioso V.R., Tao W.F., Chen W.S., Darnell J.E. Hepatocyte nuclear factor 3 alpha belongs to a gene family in mammals that is homologous to the Drosophila homeotic gene fork head. Genes Dev. 1991, 5:416-427.
-
(1991)
Genes Dev.
, vol.5
, pp. 416-427
-
-
Lai, E.1
Prezioso, V.R.2
Tao, W.F.3
Chen, W.S.4
Darnell, J.E.5
-
38
-
-
0034095475
-
Cre recombinase expression in the floorplate, notochord and gut epithelium in transgenic embryos driven by the Hoxa-1 enhancer III
-
Li X., Lufkin T. Cre recombinase expression in the floorplate, notochord and gut epithelium in transgenic embryos driven by the Hoxa-1 enhancer III. Genesis 2000, 26:121-122.
-
(2000)
Genesis
, vol.26
, pp. 121-122
-
-
Li, X.1
Lufkin, T.2
-
39
-
-
0036105591
-
RVista for comparative sequence-based discovery of functional transcription factor binding sites
-
Loots G.G., Ovcharenko I., Pachter L., Dubchak I., Rubin E.M. rVista for comparative sequence-based discovery of functional transcription factor binding sites. Genome Res. 2002, 12:832-839.
-
(2002)
Genome Res.
, vol.12
, pp. 832-839
-
-
Loots, G.G.1
Ovcharenko, I.2
Pachter, L.3
Dubchak, I.4
Rubin, E.M.5
-
40
-
-
0034518158
-
VISTA: visualizing global DNA sequence alignments of arbitrary length
-
Mayor C., Brudno M., Schwartz J.R., Poliakov A., Rubin E.M., Frazer K.A., Pachter L.S., Dubchak I. VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 2000, 16:1046-1047.
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
41
-
-
0027425313
-
Postimplantation expression patterns indicate a role for the mouse forkhead/HNF-3 alpha, beta and gamma genes in determination of the definitive endoderm, chordamesoderm and neuroectoderm
-
Monaghan A.P., Kaestner K.H., Grau E., Schutz G. Postimplantation expression patterns indicate a role for the mouse forkhead/HNF-3 alpha, beta and gamma genes in determination of the definitive endoderm, chordamesoderm and neuroectoderm. Development 1993, 119:567-578.
-
(1993)
Development
, vol.119
, pp. 567-578
-
-
Monaghan, A.P.1
Kaestner, K.H.2
Grau, E.3
Schutz, G.4
-
42
-
-
67949112662
-
Characterization of Foxp2-expressing cells in the developing spinal cord
-
Morikawa Y., Hisaoka T., Senba E. Characterization of Foxp2-expressing cells in the developing spinal cord. Neuroscience 2009, 162:1150-1162.
-
(2009)
Neuroscience
, vol.162
, pp. 1150-1162
-
-
Morikawa, Y.1
Hisaoka, T.2
Senba, E.3
-
43
-
-
45449111373
-
Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites
-
Noyes M.B., Christensen R.G., Wakabayashi A., Stormo G.D., Brodsky M.H., Wolfe S.A. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell 2008, 133:1277-1289.
-
(2008)
Cell
, vol.133
, pp. 1277-1289
-
-
Noyes, M.B.1
Christensen, R.G.2
Wakabayashi, A.3
Stormo, G.D.4
Brodsky, M.H.5
Wolfe, S.A.6
-
44
-
-
34249818182
-
Tissue-specific transcriptional regulation has diverged significantly between human and mouse
-
Odom D.T., Dowell R.D., Jacobsen E.S., Gordon W., Danford T.W., MacIsaac K.D., Rolfe P.A., Conboy C.M., Gifford D.K., Fraenkel E. Tissue-specific transcriptional regulation has diverged significantly between human and mouse. Nat. Genet. 2007, 39:730-732.
-
(2007)
Nat. Genet.
, vol.39
, pp. 730-732
-
-
Odom, D.T.1
Dowell, R.D.2
Jacobsen, E.S.3
Gordon, W.4
Danford, T.W.5
MacIsaac, K.D.6
Rolfe, P.A.7
Conboy, C.M.8
Gifford, D.K.9
Fraenkel, E.10
-
45
-
-
38949142986
-
Convergence of a head-field selector Otx2 and Notch signaling: a mechanism for lens specification
-
Ogino H., Fisher M., Grainger R.M. Convergence of a head-field selector Otx2 and Notch signaling: a mechanism for lens specification. Development 2008, 135:249-258.
-
(2008)
Development
, vol.135
, pp. 249-258
-
-
Ogino, H.1
Fisher, M.2
Grainger, R.M.3
-
46
-
-
77952127540
-
The basic helix-loop-helix transcription factor Nato3 controls neurogenic activity in mesencephalic floor plate cells
-
Ono Y., Nakatani T., Minaki Y., Kumai M. The basic helix-loop-helix transcription factor Nato3 controls neurogenic activity in mesencephalic floor plate cells. Development 2010, 137:1897-1906.
-
(2010)
Development
, vol.137
, pp. 1897-1906
-
-
Ono, Y.1
Nakatani, T.2
Minaki, Y.3
Kumai, M.4
-
47
-
-
33751316959
-
In vivo enhancer analysis of human conserved non-coding sequences
-
Pennacchio L.A., Ahituv N., Moses A.M., Prabhakar S., Nobrega M.A., Shoukry M., Minovitsky S., Dubchak I., Holt A., Lewis K.D., Plajzer-Frick I., Akiyama J., De Val S., Afzal V., Black B.L., Couronne O., Eisen M.B., Visel A., Rubin E.M. In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006, 444:499-502.
-
(2006)
Nature
, vol.444
, pp. 499-502
-
-
Pennacchio, L.A.1
Ahituv, N.2
Moses, A.M.3
Prabhakar, S.4
Nobrega, M.A.5
Shoukry, M.6
Minovitsky, S.7
Dubchak, I.8
Holt, A.9
Lewis, K.D.10
Plajzer-Frick, I.11
Akiyama, J.12
De Val, S.13
Afzal, V.14
Black, B.L.15
Couronne, O.16
Eisen, M.B.17
Visel, A.18
Rubin, E.M.19
-
48
-
-
14844300927
-
The floor plate: multiple cells, multiple signals
-
Placzek M., Briscoe J. The floor plate: multiple cells, multiple signals. Nat. Rev. Neurosci. 2005, 6:230-240.
-
(2005)
Nat. Rev. Neurosci.
, vol.6
, pp. 230-240
-
-
Placzek, M.1
Briscoe, J.2
-
49
-
-
27944435825
-
Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays
-
Rada-Iglesias A., Wallerman O., Koch C., Ameur A., Enroth S., Clelland G., Wester K., Wilcox S., Dovey O.M., Ellis P.D., Wraight V.L., James K., Andrews R., Langford C., Dhami P., Carter N., Vetrie D., Ponten F., Komorowski J., Dunham I., Wadelius C. Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays. Hum. Mol. Genet. 2005, 14:3435-3447.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 3435-3447
-
-
Rada-Iglesias, A.1
Wallerman, O.2
Koch, C.3
Ameur, A.4
Enroth, S.5
Clelland, G.6
Wester, K.7
Wilcox, S.8
Dovey, O.M.9
Ellis, P.D.10
Wraight, V.L.11
James, K.12
Andrews, R.13
Langford, C.14
Dhami, P.15
Carter, N.16
Vetrie, D.17
Ponten, F.18
Komorowski, J.19
Dunham, I.20
Wadelius, C.21
more..
-
50
-
-
0036435527
-
A floor plate enhancer of the zebrafish netrin1 gene requires Cyclops (Nodal) signalling and the winged helix transcription factor FoxA2
-
Rastegar S., Albert S., Le Roux I., Fischer N., Blader P., Muller F., Strahle U. A floor plate enhancer of the zebrafish netrin1 gene requires Cyclops (Nodal) signalling and the winged helix transcription factor FoxA2. Dev. Biol. 2002, 252:1-14.
-
(2002)
Dev. Biol.
, vol.252
, pp. 1-14
-
-
Rastegar, S.1
Albert, S.2
Le Roux, I.3
Fischer, N.4
Blader, P.5
Muller, F.6
Strahle, U.7
-
51
-
-
77953045687
-
Distinct Sonic Hedgehog signaling dynamics specify floor plate and ventral neuronal progenitors in the vertebrate neural tube
-
Ribes V., Balaskas N., Sasai N., Cruz C., Dessaud E., Cayuso J., Tozer S., Yang L.L., Novitch B., Marti E., Briscoe J. Distinct Sonic Hedgehog signaling dynamics specify floor plate and ventral neuronal progenitors in the vertebrate neural tube. Genes Dev. 2010, 24:1186-1200.
-
(2010)
Genes Dev.
, vol.24
, pp. 1186-1200
-
-
Ribes, V.1
Balaskas, N.2
Sasai, N.3
Cruz, C.4
Dessaud, E.5
Cayuso, J.6
Tozer, S.7
Yang, L.L.8
Novitch, B.9
Marti, E.10
Briscoe, J.11
-
52
-
-
23444440157
-
Floor plate and motor neuron induction by vhh-1, a vertebrate homolog of hedgehog expressed by the notochord
-
Roelink H., Augsburger A., Heemskerk J., Korzh V., Norlin S., Ruiz i Altaba A., Tanabe Y., Placzek M., Edlund T., Jessell T.M., et al. Floor plate and motor neuron induction by vhh-1, a vertebrate homolog of hedgehog expressed by the notochord. Cell 1994, 76:761-775.
-
(1994)
Cell
, vol.76
, pp. 761-775
-
-
Roelink, H.1
Augsburger, A.2
Heemskerk, J.3
Korzh, V.4
Norlin, S.5
Ruiz i Altaba, A.6
Tanabe, Y.7
Placzek, M.8
Edlund, T.9
Jessell, T.M.10
-
53
-
-
0027295651
-
Ectopic neural expression of a floor plate marker in frog embryos injected with the midline transcription factor Pintallavis
-
Ruiz i Altaba A., Cox C., Jessell T.M., Klar A. Ectopic neural expression of a floor plate marker in frog embryos injected with the midline transcription factor Pintallavis. Proc. Natl Acad. Sci. U. S. A. 1993, 90:8268-8272.
-
(1993)
Proc. Natl Acad. Sci. U. S. A.
, vol.90
, pp. 8268-8272
-
-
Ruiz i Altaba, A.1
Cox, C.2
Jessell, T.M.3
Klar, A.4
-
54
-
-
0027787596
-
Sequential expression of HNF-3 beta and HNF-3 alpha by embryonic organizing centers: the dorsal lip/node, notochord and floor plate
-
Ruiz i Altaba A., Prezioso V.R., Darnell J.E., Jessell T.M. Sequential expression of HNF-3 beta and HNF-3 alpha by embryonic organizing centers: the dorsal lip/node, notochord and floor plate. Mech. Dev. 1993, 44:91-108.
-
(1993)
Mech. Dev.
, vol.44
, pp. 91-108
-
-
Ruiz i Altaba, A.1
Prezioso, V.R.2
Darnell, J.E.3
Jessell, T.M.4
-
55
-
-
0029010669
-
Restrictions to floor plate induction by hedgehog and winged-helix genes in the neural tube of frog embryos
-
Ruiz i Altaba A., Jessell T.M., Roelink H. Restrictions to floor plate induction by hedgehog and winged-helix genes in the neural tube of frog embryos. Mol. Cell. Neurosci. 1995, 6:106-121.
-
(1995)
Mol. Cell. Neurosci.
, vol.6
, pp. 106-121
-
-
Ruiz i Altaba, A.1
Jessell, T.M.2
Roelink, H.3
-
56
-
-
0029080456
-
Early stages of notochord and floor plate development in the chick embryo defined by normal and induced expression of HNF-3 beta
-
Ruiz i Altaba A., Placzek M., Baldassare M., Dodd J., Jessell T.M. Early stages of notochord and floor plate development in the chick embryo defined by normal and induced expression of HNF-3 beta. Dev. Biol. 1995, 170:299-313.
-
(1995)
Dev. Biol.
, vol.170
, pp. 299-313
-
-
Ruiz i Altaba, A.1
Placzek, M.2
Baldassare, M.3
Dodd, J.4
Jessell, T.M.5
-
57
-
-
0347125328
-
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
-
Sandelin A., Alkema W., Engstrom P., Wasserman W.W., Lenhard B. JASPAR: an open-access database for eukaryotic transcription factor binding profiles. Nucleic Acids Res. 2004, 32:D91-94.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Sandelin, A.1
Alkema, W.2
Engstrom, P.3
Wasserman, W.W.4
Lenhard, B.5
-
58
-
-
0027318791
-
Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo
-
Sasaki H., Hogan B.L. Differential expression of multiple fork head related genes during gastrulation and axial pattern formation in the mouse embryo. Development 1993, 118:47-59.
-
(1993)
Development
, vol.118
, pp. 47-59
-
-
Sasaki, H.1
Hogan, B.L.2
-
59
-
-
0028178788
-
HNF-3 beta as a regulator of floor plate development
-
Sasaki H., Hogan B.L. HNF-3 beta as a regulator of floor plate development. Cell 1994, 76:103-115.
-
(1994)
Cell
, vol.76
, pp. 103-115
-
-
Sasaki, H.1
Hogan, B.L.2
-
60
-
-
0025008168
-
Sequence logos: a new way to display consensus sequences
-
Schneider T.D., Stephens R.M. Sequence logos: a new way to display consensus sequences. Nucleic Acids Res. 1990, 18:6097-6100.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
61
-
-
0034921230
-
Nato3 is an evolutionarily conserved bHLH transcription factor expressed in the CNS of Drosophila and mouse
-
Segev E., Halachmi N., Salzberg A., Ben-Arie N. Nato3 is an evolutionarily conserved bHLH transcription factor expressed in the CNS of Drosophila and mouse. Mech. Dev. 2001, 106:197-202.
-
(2001)
Mech. Dev.
, vol.106
, pp. 197-202
-
-
Segev, E.1
Halachmi, N.2
Salzberg, A.3
Ben-Arie, N.4
-
62
-
-
78650920165
-
Characterization of a novel bHLH protein in the developing spinal cord
-
Skaggs K., Yang M., Novitch B. Characterization of a novel bHLH protein in the developing spinal cord. Dev. Biol. 2006, 295:404-405.
-
(2006)
Dev. Biol.
, vol.295
, pp. 404-405
-
-
Skaggs, K.1
Yang, M.2
Novitch, B.3
-
63
-
-
40249112119
-
Conserved non-coding sequences and transcriptional regulation
-
Strahle U., Rastegar S. Conserved non-coding sequences and transcriptional regulation. Brain Res. Bull. 2008, 75:225-230.
-
(2008)
Brain Res. Bull.
, vol.75
, pp. 225-230
-
-
Strahle, U.1
Rastegar, S.2
-
64
-
-
0027328427
-
Axial, a zebrafish gene expressed along the developing body axis, shows altered expression in cyclops mutant embryos
-
Strahle U., Blader P., Henrique D., Ingham P.W. Axial, a zebrafish gene expressed along the developing body axis, shows altered expression in cyclops mutant embryos. Genes Dev. 1993, 7:1436-1446.
-
(1993)
Genes Dev.
, vol.7
, pp. 1436-1446
-
-
Strahle, U.1
Blader, P.2
Henrique, D.3
Ingham, P.W.4
-
65
-
-
1242316238
-
Vertebrate floor-plate specification: variations on common themes
-
Strahle U., Lam C.S., Ertzer R., Rastegar S. Vertebrate floor-plate specification: variations on common themes. Trends Genet. 2004, 20:155-162.
-
(2004)
Trends Genet.
, vol.20
, pp. 155-162
-
-
Strahle, U.1
Lam, C.S.2
Ertzer, R.3
Rastegar, S.4
-
66
-
-
34247507260
-
Combinatorial actions of patterning and HLH transcription factors in the spatiotemporal control of neurogenesis and gliogenesis in the developing spinal cord
-
Sugimori M., Nagao M., Bertrand N., Parras C.M., Guillemot F., Nakafuku M. Combinatorial actions of patterning and HLH transcription factors in the spatiotemporal control of neurogenesis and gliogenesis in the developing spinal cord. Development 2007, 134:1617-1629.
-
(2007)
Development
, vol.134
, pp. 1617-1629
-
-
Sugimori, M.1
Nagao, M.2
Bertrand, N.3
Parras, C.M.4
Guillemot, F.5
Nakafuku, M.6
-
67
-
-
57049112633
-
Expression of Foxp4 in the developing and adult rat forebrain
-
Takahashi K., Liu F.C., Hirokawa K., Takahashi H. Expression of Foxp4 in the developing and adult rat forebrain. J. Neurosci. Res. 2008, 86:3106-3116.
-
(2008)
J. Neurosci. Res.
, vol.86
, pp. 3106-3116
-
-
Takahashi, K.1
Liu, F.C.2
Hirokawa, K.3
Takahashi, H.4
-
68
-
-
0036385790
-
N-twist, an evolutionarily conserved bHLH protein expressed in the developing CNS, functions as a transcriptional inhibitor
-
Verzi M.P., Anderson J.P., Dodou E., Kelly K.K., Greene S.B., North B.J., Cripps R.M., Black B.L. N-twist, an evolutionarily conserved bHLH protein expressed in the developing CNS, functions as a transcriptional inhibitor. Dev. Biol. 2002, 249:174-190.
-
(2002)
Dev. Biol.
, vol.249
, pp. 174-190
-
-
Verzi, M.P.1
Anderson, J.P.2
Dodou, E.3
Kelly, K.K.4
Greene, S.B.5
North, B.J.6
Cripps, R.M.7
Black, B.L.8
-
69
-
-
0034662863
-
Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins
-
Watada H., Mirmira R.G., Kalamaras J., German M.S. Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins. Proc. Natl Acad. Sci. U. S. A. 2000, 97:9443-9448.
-
(2000)
Proc. Natl Acad. Sci. U. S. A.
, vol.97
, pp. 9443-9448
-
-
Watada, H.1
Mirmira, R.G.2
Kalamaras, J.3
German, M.S.4
-
70
-
-
49249110970
-
Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing
-
Wederell E.D., Bilenky M., Cullum R., Thiessen N., Dagpinar M., Delaney A., Varhol R., Zhao Y., Zeng T., Bernier B., Ingham M., Hirst M., Robertson G., Marra M.A., Jones S., Hoodless P.A. Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing. Nucleic Acids Res. 2008, 36:4549-4564.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4549-4564
-
-
Wederell, E.D.1
Bilenky, M.2
Cullum, R.3
Thiessen, N.4
Dagpinar, M.5
Delaney, A.6
Varhol, R.7
Zhao, Y.8
Zeng, T.9
Bernier, B.10
Ingham, M.11
Hirst, M.12
Robertson, G.13
Marra, M.A.14
Jones, S.15
Hoodless, P.A.16
-
71
-
-
0028025566
-
The winged-helix transcription factor HNF-3 beta is required for notochord development in the mouse embryo
-
Weinstein D.C., Ruiz i Altaba A., Chen W.S., Hoodless P., Prezioso V.R., Jessell T.M., Darnell J.E. The winged-helix transcription factor HNF-3 beta is required for notochord development in the mouse embryo. Cell 1994, 78:575-588.
-
(1994)
Cell
, vol.78
, pp. 575-588
-
-
Weinstein, D.C.1
Ruiz i Altaba, A.2
Chen, W.S.3
Hoodless, P.4
Prezioso, V.R.5
Jessell, T.M.6
Darnell, J.E.7
-
72
-
-
33746069404
-
In control of biology: of mice, men and Foxes
-
Wijchers P.J., Burbach J.P., Smidt M.P. In control of biology: of mice, men and Foxes. Biochem. J. 2006, 397:233-246.
-
(2006)
Biochem. J.
, vol.397
, pp. 233-246
-
-
Wijchers, P.J.1
Burbach, J.P.2
Smidt, M.P.3
-
73
-
-
20044366725
-
Highly conserved non-coding sequences are associated with vertebrate development
-
Woolfe A., Goodson M., Goode D.K., Snell P., McEwen G.K., Vavouri T., Smith S.F., North P., Callaway H., Kelly K., Walter K., Abnizova I., Gilks W., Edwards Y.J., Cooke J.E., Elgar G. Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 2005, 3:e7.
-
(2005)
PLoS Biol.
, vol.3
-
-
Woolfe, A.1
Goodson, M.2
Goode, D.K.3
Snell, P.4
McEwen, G.K.5
Vavouri, T.6
Smith, S.F.7
North, P.8
Callaway, H.9
Kelly, K.10
Walter, K.11
Abnizova, I.12
Gilks, W.13
Edwards, Y.J.14
Cooke, J.E.15
Elgar, G.16
-
74
-
-
0026061044
-
Control of cell pattern in the developing nervous system: polarizing activity of the floor plate and notochord
-
Yamada T., Placzek M., Tanaka H., Dodd J., Jessell T.M. Control of cell pattern in the developing nervous system: polarizing activity of the floor plate and notochord. Cell 1991, 64:635-647.
-
(1991)
Cell
, vol.64
, pp. 635-647
-
-
Yamada, T.1
Placzek, M.2
Tanaka, H.3
Dodd, J.4
Jessell, T.M.5
-
75
-
-
56749163207
-
Foxj1 transcription factors are master regulators of the motile ciliogenic program
-
Yu X., Ng C.P., Habacher H., Roy S. Foxj1 transcription factors are master regulators of the motile ciliogenic program. Nat. Genet. 2008, 40:1445-1453.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1445-1453
-
-
Yu, X.1
Ng, C.P.2
Habacher, H.3
Roy, S.4
-
76
-
-
0037023492
-
The bHLH transcription factors OLIG2 and OLIG1 couple neuronal and glial subtype specification
-
Zhou Q., Anderson D.J. The bHLH transcription factors OLIG2 and OLIG1 couple neuronal and glial subtype specification. Cell 2002, 109:61-73.
-
(2002)
Cell
, vol.109
, pp. 61-73
-
-
Zhou, Q.1
Anderson, D.J.2
-
77
-
-
34748919589
-
Proteolysis and membrane capture of F-spondin generates combinatorial guidance cues from a single molecule
-
Zisman S., Marom K., Avraham O., Rinsky-Halivni L., Gai U., Kligun G., Tzarfaty-Majar V., Suzuki T., Klar A. Proteolysis and membrane capture of F-spondin generates combinatorial guidance cues from a single molecule. J. Cell Biol. 2007, 178:1237-1249.
-
(2007)
J. Cell Biol.
, vol.178
, pp. 1237-1249
-
-
Zisman, S.1
Marom, K.2
Avraham, O.3
Rinsky-Halivni, L.4
Gai, U.5
Kligun, G.6
Tzarfaty-Majar, V.7
Suzuki, T.8
Klar, A.9
|