-
1
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, et al. (2006) A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125: 315-326.
-
(2006)
Cell
, vol.125
, pp. 315-326
-
-
Bernstein, B.E.1
Mikkelsen, T.S.2
Xie, X.3
Kamal, M.4
Huebert, D.J.5
-
2
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
-
3
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
-
Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, et al. (2007) Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 448: 553-560.
-
(2007)
Nature
, vol.448
, pp. 553-560
-
-
Mikkelsen, T.S.1
Ku, M.2
Jaffe, D.B.3
Issac, B.4
Lieberman, E.5
-
4
-
-
51649129596
-
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors
-
Mohn F, Weber M, Rebhan M, Roloff TC, Richter J, et al. (2008) Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors. Mol Cell 30: 755-766.
-
(2008)
Mol Cell
, vol.30
, pp. 755-766
-
-
Mohn, F.1
Weber, M.2
Rebhan, M.3
Roloff, T.C.4
Richter, J.5
-
5
-
-
34548434716
-
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
-
Pan G, Tian S, Nie J, Yang C, Ruotti V, et al. (2007) Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell 1: 299-312.
-
(2007)
Cell Stem Cell
, vol.1
, pp. 299-312
-
-
Pan, G.1
Tian, S.2
Nie, J.3
Yang, C.4
Ruotti, V.5
-
6
-
-
58049191558
-
Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation
-
Cui K, Zang C, Roh TY, Schones DE, Childs RW, et al. (2009) Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. Cell Stem Cell 4: 80-93.
-
(2009)
Cell Stem Cell
, vol.4
, pp. 80-93
-
-
Cui, K.1
Zang, C.2
Roh, T.Y.3
Schones, D.E.4
Childs, R.W.5
-
7
-
-
77949407420
-
Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos
-
Dahl JA, Reiner AH, Klungland A, Wakayama T, Collas P (2010) Histone H3 lysine 27 methylation asymmetry on developmentally-regulated promoters distinguish the first two lineages in mouse preimplantation embryos. PLoS ONE 5: e9150.
-
(2010)
PLoS ONE
, vol.5
-
-
Dahl, J.A.1
Reiner, A.H.2
Klungland, A.3
Wakayama, T.4
Collas, P.5
-
8
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, et al. (2008) Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454: 766-770.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
-
9
-
-
77952917994
-
Chromatin environment of histone variant H3.3 revealed by quantitative imaging and genome-scale chromatin and DNA immunoprecipitation
-
Delbarre E, Jacobsen BM, Reiner AH, Sørensen AL, Küntziger T, et al. (2010) Chromatin environment of histone variant H3.3 revealed by quantitative imaging and genome-scale chromatin and DNA immunoprecipitation. Mol Biol Cell 21: 1872-1884.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 1872-1884
-
-
Delbarre, E.1
Jacobsen, B.M.2
Reiner, A.H.3
Sørensen, A.L.4
Küntziger, T.5
-
10
-
-
77953521548
-
Promoter DNA methylation patterns of differentiated cells are largely programmed at the progenitor stage
-
Sørensen AL, Jacobsen BM, Reiner AH, Andersen IS, Collas P (2010) Promoter DNA methylation patterns of differentiated cells are largely programmed at the progenitor stage. Mol Biol Cell 21: 2066-2077.
-
(2010)
Mol Biol Cell
, vol.21
, pp. 2066-2077
-
-
Sørensen, A.L.1
Jacobsen, B.M.2
Reiner, A.H.3
Andersen, I.S.4
Collas, P.5
-
11
-
-
58849088872
-
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos
-
Schuettengruber B, Ganapathi M, Leblanc B, Portoso M, Jaschek R, et al. (2009) Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos. PLoS Biol 7: e13.
-
(2009)
PLoS Biol
, vol.7
-
-
Schuettengruber, B.1
Ganapathi, M.2
Leblanc, B.3
Portoso, M.4
Jaschek, R.5
-
12
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
Mito Y, Henikoff JG, Henikoff S (2005) Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 37: 1090-1097.
-
(2005)
Nat Genet
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
13
-
-
33947098453
-
Histone replacement marks the boundaries of cis-regulatory domains
-
Mito Y, Henikoff JG, Henikoff S (2007) Histone replacement marks the boundaries of cis-regulatory domains. Science 315: 1408-1411.
-
(2007)
Science
, vol.315
, pp. 1408-1411
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
14
-
-
37249012276
-
Nucleosome destabilization in the epigenetic regulation of gene expression
-
Henikoff S (2008) Nucleosome destabilization in the epigenetic regulation of gene expression. Nat Rev Genet 9: 15-26.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 15-26
-
-
Henikoff, S.1
-
15
-
-
69949156902
-
A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos
-
Akkers RC, van Heeringen SJ, Jacobi UG, Janssen-Megens EM, Francoijs KJ, et al. (2009) A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos. Dev Cell 17: 425-434.
-
(2009)
Dev Cell
, vol.17
, pp. 425-434
-
-
Akkers, R.C.1
van Heeringen, S.J.2
Jacobi, U.G.3
Janssen-Megens, E.M.4
Francoijs, K.J.5
-
16
-
-
77952504833
-
ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation
-
Akkers RC, van Heeringen SJ, Manak JR, Green RD, Stunnenberg HG, et al. (2010) ChIP-chip designs to interrogate the genome of Xenopus embryos for transcription factor binding and epigenetic regulation. PLoS ONE 5: e8820.
-
(2010)
PLoS ONE
, vol.5
-
-
Akkers, R.C.1
van Heeringen, S.J.2
Manak, J.R.3
Green, R.D.4
Stunnenberg, H.G.5
-
17
-
-
33749117367
-
Zebrafish promoter microarrays identify actively transcribed embryonic genes
-
Wardle FC, Odom DT, Bell GW, Yuan B, Danford TW, et al. (2006) Zebrafish promoter microarrays identify actively transcribed embryonic genes. Genome Biol 7: R71.
-
(2006)
Genome Biol
, vol.7
-
-
Wardle, F.C.1
Odom, D.T.2
Bell, G.W.3
Yuan, B.4
Danford, T.W.5
-
18
-
-
77950866717
-
Chromatin signature of embryonic pluripotency is established during genome activation
-
Vastenhouw NL, Zhang Y, Woods IG, Imam F, Regev A, et al. (2010) Chromatin signature of embryonic pluripotency is established during genome activation. Nature 464: 922-926.
-
(2010)
Nature
, vol.464
, pp. 922-926
-
-
Vastenhouw, N.L.1
Zhang, Y.2
Woods, I.G.3
Imam, F.4
Regev, A.5
-
19
-
-
0027428885
-
Characterization of a cell line derived from zebrafish (Brachydanio rerio) embryos
-
Driever W, Rangini Z (1993) Characterization of a cell line derived from zebrafish (Brachydanio rerio) embryos. In Vitro Cell Dev Biol Anim 29A: 749-754.
-
(1993)
Vitro Cell Dev Biol Anim
, vol.29 A
, pp. 749-754
-
-
Driever, W.1
Rangini, Z.2
-
20
-
-
34047211996
-
Comparison of sample preparation methods for ChIP-chip assays
-
O'Geen H, Nicolet CM, Blahnik K, Green R, Farnham PJ (2006) Comparison of sample preparation methods for ChIP-chip assays. Biotechniques 41: 577-580.
-
(2006)
Biotechniques
, vol.41
, pp. 577-580
-
-
O'Geen, H.1
Nicolet, C.M.2
Blahnik, K.3
Green, R.4
Farnham, P.J.5
-
21
-
-
37349081961
-
Genome-scale ChIP-chip analysis using 10,000 human cells
-
Acevedo LG, Iniguez AL, Holster HL, Zhang X, Green R, et al. (2007) Genome-scale ChIP-chip analysis using 10,000 human cells. Biotechniques 43: 791-797.
-
(2007)
Biotechniques
, vol.43
, pp. 791-797
-
-
Acevedo, L.G.1
Iniguez, A.L.2
Holster, H.L.3
Zhang, X.4
Green, R.5
-
23
-
-
77956030589
-
Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos
-
Lindeman LC, Winata CL, Aanes H, Mathavan S, Aleström P, et al. (2010) Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos. Int J Dev Biol 54: 803-813.
-
(2010)
Int J Dev Biol
, vol.54
, pp. 803-813
-
-
Lindeman, L.C.1
Winata, C.L.2
Aanes, H.3
Mathavan, S.4
Aleström, P.5
-
24
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, et al. (2006) The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet 38: 431-440.
-
(2006)
Nat Genet
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
-
25
-
-
77957220857
-
Comparative epigenomic analysis of murine and human adipogenesis
-
Mikkelsen TS, Xu Z, Zhang X, Wang L, Gimble JM, et al. (2010) Comparative epigenomic analysis of murine and human adipogenesis. Cell 143: 156-169.
-
(2010)
Cell
, vol.143
, pp. 156-169
-
-
Mikkelsen, T.S.1
Xu, Z.2
Zhang, X.3
Wang, L.4
Gimble, J.M.5
-
26
-
-
37249026814
-
Genome-wide analysis of DNA methylation patterns
-
Zilberman D, Henikoff S (2007) Genome-wide analysis of DNA methylation patterns. Development 134: 3959-3965.
-
(2007)
Development
, vol.134
, pp. 3959-3965
-
-
Zilberman, D.1
Henikoff, S.2
-
27
-
-
55549141877
-
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
-
Zilberman D, Coleman-Derr D, Ballinger T, Henikoff S (2008) Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks. Nature 456: 125-129.
-
(2008)
Nature
, vol.456
, pp. 125-129
-
-
Zilberman, D.1
Coleman-Derr, D.2
Ballinger, T.3
Henikoff, S.4
-
28
-
-
53049092465
-
Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states
-
Hayashi K, Lopes SM, Tang F, Surani MA (2008) Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states. Cell Stem Cell 3: 391-401.
-
(2008)
Cell Stem Cell
, vol.3
, pp. 391-401
-
-
Hayashi, K.1
Lopes, S.M.2
Tang, F.3
Surani, M.A.4
-
29
-
-
38649099445
-
High-resolution mapping and characterization of open chromatin across the genome
-
Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, et al. (2008) High-resolution mapping and characterization of open chromatin across the genome. Cell 132: 311-322.
-
(2008)
Cell
, vol.132
, pp. 311-322
-
-
Boyle, A.P.1
Davis, S.2
Shulha, H.P.3
Meltzer, P.4
Margulies, E.H.5
-
30
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
Wang Z, Zang C, Cui K, Schones DE, Barski A, et al. (2009) Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 138: 1019-1031.
-
(2009)
Cell
, vol.138
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
-
31
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
Jin C, Zang C, Wei G, Cui K, Peng W, et al. (2009) H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 41: 941-945.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
-
32
-
-
77149175671
-
Regulation of alternative splicing by histone modifications
-
Luco RF, Pan Q, Tominaga K, Blencowe BJ, Pereira-Smith OM, et al. (2010) Regulation of alternative splicing by histone modifications. Science 327: 996-1000.
-
(2010)
Science
, vol.327
, pp. 996-1000
-
-
Luco, R.F.1
Pan, Q.2
Tominaga, K.3
Blencowe, B.J.4
Pereira-Smith, O.M.5
-
33
-
-
40449126726
-
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
-
Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, et al. (2008) Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Res 18: 393-403.
-
(2008)
Genome Res
, vol.18
, pp. 393-403
-
-
Johnson, D.S.1
Li, W.2
Gordon, D.B.3
Bhattacharjee, A.4
Curry, B.5
-
34
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
Falcon S, Gentleman R (2007) Using GOstats to test gene lists for GO term association. Bioinformatics 23: 257-258.
-
(2007)
Bioinformatics
, vol.23
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
|