메뉴 건너뛰기




Volumn 24, Issue 1, 2011, Pages 126-137

Hierarchical clustering analysis of pathologic and molecular data identifies prognostically and biologically distinct groups of colorectal carcinomas

Author keywords

chromosomal instability; colorectal carcinoma; hierarchical clustering analysis; molecular classification

Indexed keywords

ADULT; AGED; ARTICLE; CANCER CLASSIFICATION; CANCER SURVIVAL; CHROMOSOMAL INSTABILITY; CLINICAL FEATURE; COHORT ANALYSIS; COLORECTAL CARCINOMA; CONTROLLED STUDY; FEMALE; HETEROZYGOSITY; HUMAN; MAJOR CLINICAL STUDY; MALE; METHYLATION; MICROSATELLITE INSTABILITY; PRIORITY JOURNAL; PROPORTIONAL HAZARDS MODEL;

EID: 78650889812     PISSN: 08933952     EISSN: 15300285     Source Type: Journal    
DOI: 10.1038/modpathol.2010.179     Document Type: Article
Times cited : (19)

References (36)
  • 1
    • 53049087109 scopus 로고    scopus 로고
    • Genomic and epigenetic instability in colorectal cancer pathogenesis
    • Grady WM, Carethers JM. Genomic and epigenetic instability in colorectal cancer pathogenesis. Gastro-enterology 2008;135:1079-1099.
    • (2008) Gastroenterology , vol.135 , pp. 1079-1099
    • Grady, W.M.1    Carethers, J.M.2
  • 2
    • 36749025213 scopus 로고    scopus 로고
    • Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer
    • Shen L, Toyota M, Kondo Y, et al. Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer. Proc Natl Acad Sci USA 2007;104:18654-18659.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 18654-18659
    • Shen, L.1    Toyota, M.2    Kondo, Y.3
  • 3
    • 37149041833 scopus 로고    scopus 로고
    • Molecular classification and correlates in colorectal cancer
    • Ogino S, Goel A. Molecular classification and correlates in colorectal cancer. J Mol Diagn 2008;10: 13-27.
    • (2008) J Mol Diagn , vol.10 , pp. 13-27
    • Ogino, S.1    Goel, A.2
  • 4
    • 67649506174 scopus 로고    scopus 로고
    • Genetic prognostic and predictive markers in colorectal cancer
    • Walther A, Johnstone E, Swanton C, et al. Genetic prognostic and predictive markers in colorectal cancer. Nat Rev Cancer 2009;9:489-499.
    • (2009) Nat Rev Cancer , vol.9 , pp. 489-499
    • Walther, A.1    Johnstone, E.2    Swanton, C.3
  • 5
    • 33845608798 scopus 로고    scopus 로고
    • Classification of colorectal cancer based on correlation of clinical, morphological and molecular features
    • Jass JR. Classification of colorectal cancer based on correlation of clinical, morphological and molecular features. Histopathology 2007;50:113-130.
    • (2007) Histopathology , vol.50 , pp. 113-130
    • Jass, J.R.1
  • 6
    • 50649096375 scopus 로고    scopus 로고
    • Up-regulation of the hypoxia-inducible factor-1 transcriptional pathway in colorectal carcinomas
    • Furlan D, Sahnane N, Carnevali I, et al. Up-regulation of the hypoxia-inducible factor-1 transcriptional pathway in colorectal carcinomas. Hum Pathol 2008;39: 1483-1494.
    • (2008) Hum Pathol , vol.39 , pp. 1483-1494
    • Furlan, D.1    Sahnane, N.2    Carnevali, I.3
  • 9
    • 0042308355 scopus 로고    scopus 로고
    • Microallelotyp-ing defines the monoclonal or the polyclonal origin of mixed and collision endocrine-exocrine tumors of the gut
    • Furlan D, Cerutti R, Genasetti A, et al. Microallelotyp-ing defines the monoclonal or the polyclonal origin of mixed and collision endocrine-exocrine tumors of the gut. Lab Invest 2003;83:963-971.
    • (2003) Lab Invest , vol.83 , pp. 963-971
    • Furlan, D.1    Cerutti, R.2    Genasetti, A.3
  • 10
    • 0032534069 scopus 로고    scopus 로고
    • A national cancer institute workshop on micro-satellite instability for cancer detection and familial predisposition: Development of international criteria for the determination of microsatellite instability in colorectal cancer
    • Boland CR, Thibodeau SN, Hamilton SR, et al. A national cancer institute workshop on micro-satellite instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer. Cancer Res 1998;58:5248-5257.
    • (1998) Cancer Res , vol.58 , pp. 5248-5257
    • Boland, C.R.1    Thibodeau, S.N.2    Hamilton, S.R.3
  • 11
    • 0036080936 scopus 로고    scopus 로고
    • A new method to extract nuclei from paraffin-embedded tissue to study lymphomas using interphase fluorescence in situ hybridization
    • Paternoster SF, Brockman SR, McClure RF, et al. A new method to extract nuclei from paraffin-embedded tissue to study lymphomas using interphase fluorescence in situ hybridization. Am J Pathol 2002;160: 1967-1972.
    • (2002) Am J Pathol , vol.160 , pp. 1967-1972
    • Paternoster, S.F.1    Brockman, S.R.2    McClure, R.F.3
  • 12
    • 64049093008 scopus 로고    scopus 로고
    • BCL2, BCL6, MYC, MALT 1, and BCL10 rearrangements in nodal diffuse large B-cell lymphomas: A multicenter evaluation of a new set of fluorescent in situ hybridization probes and correlation with clinical outcome
    • Tibiletti MG, Martin V, Bernasconi B, et al. BCL2, BCL6, MYC, MALT 1, and BCL10 rearrangements in nodal diffuse large B-cell lymphomas: a multicenter evaluation of a new set of fluorescent in situ hybridization probes and correlation with clinical outcome. Hum Pathol 2009;40:645-652.
    • (2009) Hum Pathol , vol.40 , pp. 645-652
    • Tibiletti, M.G.1    Martin, V.2    Bernasconi, B.3
  • 13
    • 0034654669 scopus 로고    scopus 로고
    • Methy-Light: A high-throughput assay to measure DNA methylation
    • Eads CA, Danenberg KD, Kawakami K, et al. Methy-Light: a high-throughput assay to measure DNA methylation. Nucleic Acids Res 2000;28:E32.
    • (2000) Nucleic Acids Res , vol.28
    • Eads, C.A.1    Danenberg, K.D.2    Kawakami, K.3
  • 14
    • 68149100834 scopus 로고    scopus 로고
    • MGMT methyla-tion in diffuse large B-cell lymphoma: Validation of quantitative methylation-specific PCR and comparison with MGMT protein expression
    • Uccella S, Cerutti R, Placidi C, et al. MGMT methyla-tion in diffuse large B-cell lymphoma: validation of quantitative methylation-specific PCR and comparison with MGMT protein expression. J Clin Pathol 2009;62: 715-723.
    • (2009) J Clin Pathol , vol.62 , pp. 715-723
    • Uccella, S.1    Cerutti, R.2    Placidi, C.3
  • 15
    • 70149113077 scopus 로고    scopus 로고
    • R Development Core Team R Foundation for Statistical Computing: Vienna
    • R Development Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing: Vienna, 2009.
    • (2009) R: A Language and Environment for Statistical Computing
  • 16
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sorlie T, Tibshirani R, Parker J, et al. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci USA 2003;100:8418-8423.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8418-8423
    • Sorlie, T.1    Tibshirani, R.2    Parker, J.3
  • 17
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • Van't Veer LJ, Dai H, van de Vijver MJ, et al. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002; 415: 530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • Van'T Veer, L.J.1    Dai, H.2    Van De Vijver, M.J.3
  • 18
    • 0034598746 scopus 로고    scopus 로고
    • Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    • Alizadeh AA, Eisen MB, Davis RE, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-511.
    • (2000) Nature , vol.403 , pp. 503-511
    • Alizadeh, A.A.1    Eisen, M.B.2    Davis, R.E.3
  • 19
    • 0035923583 scopus 로고    scopus 로고
    • Diversity of gene expression in adenocarcinoma of the lung
    • Garber ME, Troyanskaya OG, Schluens K, et al. Diversity of gene expression in adenocarcinoma of the lung. Proc Natl Acad Sci USA 2001;98:13784-13789.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 13784-13789
    • Garber, M.E.1    Troyanskaya, O.G.2    Schluens, K.3
  • 20
    • 4544264923 scopus 로고    scopus 로고
    • Evaluation of immunohistochemical markers in non-small cell lung cancer by unsupervised hierarchical clustering analysis: A tissue microarray study of 284 cases and 18 markers
    • Au NH, Cheang M, Huntsman DG, et al. Evaluation of immunohistochemical markers in non-small cell lung cancer by unsupervised hierarchical clustering analysis: a tissue microarray study of 284 cases and 18 markers. J Pathol 2004;204:101-109.
    • (2004) J Pathol , vol.204 , pp. 101-109
    • Au, N.H.1    Cheang, M.2    Huntsman, D.G.3
  • 21
    • 4644285491 scopus 로고    scopus 로고
    • Hierarchical clustering analysis of tissue microarray immunostaining data identifies prognostically significant groups of breast carcinoma
    • Makretsov NA, Huntsman DG, Nielsen TO, et al. Hierarchical clustering analysis of tissue microarray immunostaining data identifies prognostically significant groups of breast carcinoma. Clin Cancer Res 2004;10:6143-6151.
    • (2004) Clin Cancer Res , vol.10 , pp. 6143-6151
    • Makretsov, N.A.1    Huntsman, D.G.2    Nielsen, T.O.3
  • 22
    • 35348984917 scopus 로고    scopus 로고
    • Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data
    • Alkushi A, Clarke BA, Akbari M, et al. Identification of prognostically relevant and reproducible subsets of endometrial adenocarcinoma based on clustering analysis of immunostaining data. Mod Pathol 2007; 20:1156-1165.
    • (2007) Mod Pathol , vol.20 , pp. 1156-1165
    • Alkushi, A.1    Clarke, B.A.2    Akbari, M.3
  • 23
    • 28544446428 scopus 로고    scopus 로고
    • Microsatellite instability and colorectal cancer prognosis
    • Benatti P, Gafa R, Barana D, et al. Microsatellite instability and colorectal cancer prognosis. Clin Cancer Res 2005;11:8332-8340.
    • (2005) Clin Cancer Res , vol.11 , pp. 8332-8340
    • Benatti, P.1    Gafa, R.2    Barana, D.3
  • 24
    • 46349086833 scopus 로고    scopus 로고
    • Association between chromosomal instability and prognosis in colo-rectal cancer: A meta-analysis
    • Walther A, Houlston R, Tomlinson I. Association between chromosomal instability and prognosis in colo-rectal cancer: a meta-analysis. Gut 2008;57:941-950.
    • (2008) Gut , vol.57 , pp. 941-950
    • Walther, A.1    Houlston, R.2    Tomlinson, I.3
  • 25
    • 14544300998 scopus 로고    scopus 로고
    • Systematic review of microsatellite instability and colorectal cancer prognosis
    • Popat S, Hubner R, Houlston RS. Systematic review of microsatellite instability and colorectal cancer prognosis. J Clin Oncol 2005;23:609-618.
    • (2005) J Clin Oncol , vol.23 , pp. 609-618
    • Popat, S.1    Hubner, R.2    Houlston, R.S.3
  • 26
    • 0033083214 scopus 로고    scopus 로고
    • Micro-satellite instability: Impact on cancer progression in proximal and distal colorectal cancers
    • Jernvall P, Makinen MJ, Karttunen TJ, et al. Micro-satellite instability: impact on cancer progression in proximal and distal colorectal cancers. Eur J Cancer 1999;35:197-201.
    • (1999) Eur J Cancer , vol.35 , pp. 197-201
    • Jernvall, P.1    Makinen, M.J.2    Karttunen, T.J.3
  • 27
    • 0033523204 scopus 로고    scopus 로고
    • Micro-satellite instability and 8p allelic imbalance in stage B2 and C colorectal cancers
    • Halling KC, French AJ, McDonnell SK, et al. Micro-satellite instability and 8p allelic imbalance in stage B2 and C colorectal cancers. J Natl Cancer Inst 1999;91: 1295-1303.
    • (1999) J Natl Cancer Inst , vol.91 , pp. 1295-1303
    • Halling, K.C.1    French, A.J.2    McDonnell, S.K.3
  • 28
    • 0032892831 scopus 로고    scopus 로고
    • Micro-satellite instability in sporadic colorectal carcinoma is not an indicator of prognosis
    • Feeley KM, Fullard JF, Heneghan MA, et al. Micro-satellite instability in sporadic colorectal carcinoma is not an indicator of prognosis. J Pathol 1999;188:14-17.
    • (1999) J Pathol , vol.188 , pp. 14-17
    • Feeley, K.M.1    Fullard, J.F.2    Heneghan, M.A.3
  • 29
    • 0032867362 scopus 로고    scopus 로고
    • Microsatel-lite instability in sporadic colorectal cancer is not an independent prognostic factor
    • Salahshor S, Kressner U, Fischer H, et al. Microsatel-lite instability in sporadic colorectal cancer is not an independent prognostic factor. Br J Cancer 1999;81: 190-193.
    • (1999) Br J Cancer , vol.81 , pp. 190-193
    • Salahshor, S.1    Kressner, U.2    Fischer, H.3
  • 30
    • 0033831989 scopus 로고    scopus 로고
    • Prognostic significance of extensive microsatellite instability in sporadic clinicopathological stage C colorectal cancer
    • Wright CM, Dent OF, Barker M, et al. Prognostic significance of extensive microsatellite instability in sporadic clinicopathological stage C colorectal cancer. Br J Surg 2000;87:1197-1202.
    • (2000) Br J Surg , vol.87 , pp. 1197-1202
    • Wright, C.M.1    Dent, O.F.2    Barker, M.3
  • 31
    • 5544242524 scopus 로고    scopus 로고
    • Microsatellite instability and high content of activated cytotoxic lymphocytes identify colon cancer patients with a favorable prognosis
    • Guidoboni M, Gafa R, Viel A, et al. Microsatellite instability and high content of activated cytotoxic lymphocytes identify colon cancer patients with a favorable prognosis. Am J Pathol 2001;159:297-304.
    • (2001) Am J Pathol , vol.159 , pp. 297-304
    • Guidoboni, M.1    Gafa, R.2    Viel, A.3
  • 32
    • 0141576687 scopus 로고    scopus 로고
    • The significance of unstable chromosomes in colorectal cancer
    • Rajagopalan H, Nowak MA, Vogelstein B, et al. The significance of unstable chromosomes in colorectal cancer. Nat Rev Cancer 2003;3:695-701.
    • (2003) Nat Rev Cancer , vol.3 , pp. 695-701
    • Rajagopalan, H.1    Nowak, M.A.2    Vogelstein, B.3
  • 33
    • 0842342605 scopus 로고    scopus 로고
    • Induction of aneuploidy by increasing chromosomal instability during dedifferentiation of hepatocellular carcinoma
    • Wilkens L, Flemming P, Gebel M, et al. Induction of aneuploidy by increasing chromosomal instability during dedifferentiation of hepatocellular carcinoma. Proc Natl Acad Sci USA 2004;101:1309-1314.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 1309-1314
    • Wilkens, L.1    Flemming, P.2    Gebel, M.3
  • 34
    • 0024959672 scopus 로고
    • Clinical and pathological associations with allelic loss in colorectal carcinoma [corrected]
    • Kern SE, Fearon ER, Tersmette KW, et al. Clinical and pathological associations with allelic loss in colorectal carcinoma [corrected]. JAMA 1989;261:3099-3103.
    • (1989) JAMA , vol.261 , pp. 3099-3103
    • Kern, S.E.1    Fearon, E.R.2    Tersmette, K.W.3
  • 35
    • 0043203055 scopus 로고    scopus 로고
    • 0 B colorectal cancer patients: How much evidence is enough?
    • 0 B colorectal cancer patients: how much evidence is enough? Ann Oncol 2003;14:1026-1038.
    • (2003) Ann Oncol , vol.14 , pp. 1026-1038
    • Graziano, F.1    Cascinu, S.2
  • 36
    • 32544444419 scopus 로고    scopus 로고
    • The TP53 Colorectal Cancer International Collaborative Study on the prognostic and predictive significance of p53 mutation: Influence of tumor site, type of mutation, and adjuvant treatment
    • Russo A, Bazan V, Iacopetta B, et al. The TP53 Colorectal Cancer International Collaborative Study on the prognostic and predictive significance of p53 mutation: influence of tumor site, type of mutation, and adjuvant treatment. J Clin Oncol 2005;23: 7518-7528.
    • (2005) J Clin Oncol , vol.23 , pp. 7518-7528
    • Russo, A.1    Bazan, V.2    Iacopetta, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.