-
1
-
-
84961980477
-
Quantum mechanical continuum solvation models
-
DOI 10.1021/cr9904009
-
J. Tomasi, B. Mennucci, and R. Cammi, Chem. Rev. 105, 2999 (2005). 10.1021/cr9904009 (Pubitemid 41222791)
-
(2005)
Chemical Reviews
, vol.105
, Issue.8
, pp. 2999-3093
-
-
Tomasi, J.1
Mennucci, B.2
Cammi, R.3
-
2
-
-
0037104738
-
a from dielectric continuum theory
-
DOI 10.1021/jp020847c
-
D. M. Chipman, Theor. Chem. Acc. 107, 80 (2002). 10.1021/jp020847c (Pubitemid 35382586)
-
(2002)
Journal of Physical Chemistry A
, vol.106
, Issue.32
, pp. 7413-7422
-
-
Chipman, D.M.1
-
3
-
-
0000262725
-
-
10.1063/1.481133
-
D. M. Chipman, J. Chem. Phys. 112, 5558 (2000). 10.1063/1.481133
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 5558
-
-
Chipman, D.M.1
-
11
-
-
0035826004
-
Comment on "reaction field treatment of charge penetration" [J. Chem. Phys. 112, 5558 (2000)]
-
DOI 10.1063/1.1349091
-
E. Cancs and B. Mennucci, J. Chem. Phys. 114, 4744 (2001). 10.1063/1.1349091 (Pubitemid 32287453)
-
(2001)
Journal of Chemical Physics
, vol.114
, Issue.10
, pp. 4744-4745
-
-
Cances, E.1
Mennucci, B.2
-
12
-
-
1542356431
-
-
10.1021/jp960488j
-
J. B. Foresman, T. A. Keith, K. B. Wiberg, J. Snoonian, and M. J. Frisch, J. Phys. Chem. 100, 16098 (1996). 10.1021/jp960488j
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 16098
-
-
Foresman, J.B.1
Keith, T.A.2
Wiberg, K.B.3
Snoonian, J.4
Frisch, M.J.5
-
14
-
-
55749093054
-
-
10.1021/jp804092v
-
B. Ginovska, D. M. Camaioni, M. Dupuis, C. A. Schwerdtfeger, and Q. Gil, J. Phys. Chem. A 112, 10604 (2008). 10.1021/jp804092v
-
(2008)
J. Phys. Chem. A
, vol.112
, pp. 10604
-
-
Ginovska, B.1
Camaioni, D.M.2
Dupuis, M.3
Schwerdtfeger, C.A.4
Gil, Q.5
-
18
-
-
84962427522
-
-
10.1002/jcc.20076
-
C. S. Pomelli, J. Comput. Chem. 25, 1532 (2004). 10.1002/jcc.20076
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1532
-
-
Pomelli, C.S.1
-
20
-
-
84962433811
-
-
10.1063/1.3077917
-
P. Su and H. Li, J. Chem. Phys. 130, 074109 (2009). 10.1063/1.3077917
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 074109
-
-
Su, P.1
Li, H.2
-
23
-
-
84962359221
-
-
10.1016/0009-2614(96)00349-1
-
M. Cossi, V. Barone, R. Cammi, and J. Tomasi, Chem. Phys. Lett. 255, 327 (1996). 10.1016/0009-2614(96)00349-1
-
(1996)
Chem. Phys. Lett.
, vol.255
, pp. 327
-
-
Cossi, M.1
Barone, V.2
Cammi, R.3
Tomasi, J.4
-
24
-
-
0343791148
-
-
10.1021/ja01299a050
-
L. Onsager, J. Am. Chem. Soc. 58, 1486 (1936). 10.1021/ja01299a050
-
(1936)
J. Am. Chem. Soc.
, vol.58
, pp. 1486
-
-
Onsager, L.1
-
25
-
-
20644431615
-
-
10.1063/1.1749489
-
J. G. Kirkwood, J. Chem. Phys. 2, 351 (1934). 10.1063/1.1749489
-
(1934)
J. Chem. Phys.
, vol.2
, pp. 351
-
-
Kirkwood, J.G.1
-
26
-
-
34250928962
-
-
10.1007/BF01881023
-
M. Born, Z. Phys. 1, 45 (1920). 10.1007/BF01881023
-
(1920)
Z. Phys.
, vol.1
, pp. 45
-
-
Born, M.1
-
27
-
-
20544433165
-
-
10.1021/j100785a001
-
A. Bondi, J. Phys. Chem. 68, 441 (1964). 10.1021/j100785a001
-
(1964)
J. Phys. Chem.
, vol.68
, pp. 441
-
-
Bondi, A.1
-
29
-
-
0000538815
-
-
10.1107/S0021889883010985
-
M. L. Connolly, J. Appl. Crystallog. 16, 548 (1983). 10.1107/ S0021889883010985
-
(1983)
J. Appl. Crystallog.
, vol.16
, pp. 548
-
-
Connolly, M.L.1
-
31
-
-
0842295188
-
-
10.1016/0041-5553(75)90133-0
-
V. I. Lebedev, USSR Comp. Math. Math+ 15, 44 (1975). 10.1016/0041- 5553(75)90133-0
-
(1975)
USSR Comp. Math. Math+
, vol.15
, pp. 44
-
-
Lebedev, V.I.1
-
33
-
-
84962428748
-
-
G. Scalmani, V. Barone, K. N. Kudin, C. S. Pomelli, G. E. Scuseria, and M. J. Frisch, Theor. Chem. Acc. 111, 90 (2004).
-
(2004)
Theor. Chem. Acc.
, vol.111
, pp. 90
-
-
Scalmani, G.1
Barone, V.2
Kudin, K.N.3
Pomelli, C.S.4
Scuseria, G.E.5
Frisch, M.J.6
-
36
-
-
84962440518
-
Analytical derivatives for geometry optimization in solvation continuum models. II. Numerical applications
-
DOI 10.1063/1.476559, PII S0021960698505259
-
E. Cancs, B. Mennucci, and J. Tomasi, J. Chem. Phys. 109, 260 (1998). 10.1063/1.476559 (Pubitemid 128678824)
-
(1998)
Journal of Chemical Physics
, vol.109
, Issue.1
, pp. 260-266
-
-
Cances, E.1
Mennucci, B.2
Tomasi, J.3
-
37
-
-
84961986752
-
New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution
-
DOI 10.1063/1.1480445
-
M. Cossi, G. Scalmani, N. Rega, and V. Barone, J. Chem. Phys. 117, 43 (2002). 10.1063/1.1480445 (Pubitemid 34783207)
-
(2002)
Journal of Chemical Physics
, vol.117
, Issue.1
, pp. 43-54
-
-
Cossi, M.1
Scalmani, G.2
Rega, N.3
Barone, V.4
-
38
-
-
84962349001
-
-
10.1002/jcc.10189
-
M. Cossi, N. Rega, G. Scalmani, and V. Barone, J. Comput. Chem. 24, 669 (2002). 10.1002/jcc.10189
-
(2002)
J. Comput. Chem.
, vol.24
, pp. 669
-
-
Cossi, M.1
Rega, N.2
Scalmani, G.3
Barone, V.4
-
39
-
-
84987100611
-
-
10.1021/y1004629017
-
J. A. Pople, R. Krishnan, H. B. Schegel, and J. S. Binkley, Int. J. Quantum Chem. Symp. 13, 225 (1979). 10.1021/y1004629017
-
(1979)
Int. J. Quantum Chem. Symp.
, vol.13
, pp. 225
-
-
Pople, J.A.1
Krishnan, R.2
Schegel, H.B.3
Binkley, J.S.4
-
41
-
-
21444442028
-
High-order discretization schemes for biochemical applications of boundary element solvation and variational electrostatic projection methods
-
DOI 10.1063/1.1899146, 194110
-
B. A. Gregersen and D. M. York, J. Chem. Phys. 122, 194110 (2005). 10.1063/1.1899146 (Pubitemid 40914307)
-
(2005)
Journal of Chemical Physics
, vol.122
, Issue.19
, pp. 1-4
-
-
Gregersen, B.A.1
York, D.M.2
-
42
-
-
78650913760
-
-
See supplementary material at E-JCPSA6-133-023042 for definitions of the switching function parameters and numerical data regarding convergence with respect to the number of Lebedev grid points
-
See supplementary material at http://dx.doi.org/10.1063/1.3511297 E-JCPSA6-133-023042 for definitions of the switching function parameters and numerical data regarding convergence with respect to the number of Lebedev grid points.
-
-
-
-
43
-
-
19944382179
-
Smooth solvation method for d-orbital semiempirical calculations of biological reactions. 1. Implementation
-
DOI 10.1021/jp044062d
-
J. Khandogin, B. A. Gregersen, W. Thiel, and D. M. York, J. Phys. Chem. B 109, 9799 (2005). 10.1021/jp044062d (Pubitemid 40751079)
-
(2005)
Journal of Physical Chemistry B
, vol.109
, Issue.19
, pp. 9799-9809
-
-
Khandogin, J.1
Gregersen, B.A.2
Thiel, W.3
York, D.M.4
-
44
-
-
84961974339
-
-
10.1063/1.478729
-
D. M. Chipman, J. Chem. Phys. 110, 8012 (1999). 10.1063/1.478729
-
(1999)
J. Chem. Phys.
, vol.110
, pp. 8012
-
-
Chipman, D.M.1
-
47
-
-
33746563448
-
-
10.1039/b517914a
-
Y. Shao, L. Fusti-Molnar, Y. Jung, J. Kussmann, C. Ochsenfeld, S. T. Brown, A. T. B. Gilbert, L. V. Slipchenko, S. V. Levchenko, D. P. ONeill, R. A. DiStasio, Jr, R. C. Lochan, T. Wang, G. J. O. Beran, N. A. Besley, J. M. Herbert, C. Y. Lin, T. Van Voorhis, S. H. Chien, A. Sodt, R. P. Steele, V. A. Rassolov, P. E. Maslen, P. P. Korambath, R. D. Adamson B. Austin, J. Baker, E. F. C. Byrd, H. Dachsel, R. J. Doerksen, A. Dreuw, B. D. Dunietz, A. D. Dutoi, T. R. Furlani, S. R. Gwaltney, A. Heyden, S. Hirata, C.-P. Hsu, G. Kedziora, R. Z. Khalliulin, P. Klunzinger, A. M. Lee, M. S. Lee, W. Liang, I. Lotan, N. Nair, B. Peters, E. I. Proynov, P. A. Pieniazek, Y. M. Rhee, J. Ritchie, E. Rosta, C. D. Sherrill, A. C. Simmonett, J. E. Subotnik, H. L. Woodcock III, W. Zhang, A. T. Bell, A. K. Chakraborty, D. M. Chipman, F. J. Keil, A. Warshel, W. J. Hehre, H. F. Schaefer III, J. Kong, A. I. Krylov, P. M. W. Gill, and M. Head-Gordon, Phys. Chem. Chem. Phys. 8, 3172 (2006). 10.1039/b517914a
-
(2006)
Phys. Chem. Chem. Phys.
, vol.8
, pp. 3172
-
-
Shao, Y.1
Fusti-Molnar, L.2
Jung, Y.3
Kussmann, J.4
Ochsenfeld, C.5
Brown, S.T.6
Gilbert, A.T.B.7
Slipchenko, L.V.8
Levchenko, S.V.9
Oneill, D.P.10
Distasio, R.A.11
Lochan, J.R.C.12
Wang, T.13
Beran, G.J.O.14
Besley, N.A.15
Herbert, J.M.16
Lin, C.Y.17
Van Voorhis, T.18
Chien, S.H.19
Sodt, A.20
Steele, R.P.21
Rassolov, V.A.22
Maslen, P.E.23
Korambath, P.P.24
Austin, R.D.A.B.25
Baker, J.26
Byrd, E.F.C.27
Dachsel, H.28
Doerksen, R.J.29
Dreuw, A.30
Dunietz, B.D.31
Dutoi, A.D.32
Furlani, T.R.33
Gwaltney, S.R.34
Heyden, A.35
Hirata, S.36
Hsu, C.-P.37
Kedziora, G.38
Khalliulin, R.Z.39
Klunzinger, P.40
Lee, A.M.41
Lee, M.S.42
Liang, W.43
Lotan, I.44
Nair, N.45
Peters, B.46
Proynov, E.I.47
Pieniazek, P.A.48
Rhee, Y.M.49
Ritchie, J.50
Rosta, E.51
Sherrill, C.D.52
Simmonett, A.C.53
Subotnik, J.E.54
Woodcock III, H.L.55
Zhang, W.56
Bell, A.T.57
Chakraborty, A.K.58
Chipman, D.M.59
Keil, F.J.60
Warshel, A.61
Hehre, W.J.62
Schaefer Iii, H.F.63
Kong, J.64
Krylov, A.I.65
Gill, P.M.W.66
Head-Gordon, M.67
more..
-
50
-
-
78650872930
-
-
One could reasonably argue that the use of AMBER 99 point charges is inappropriate for bond-breaking, and that ionic radii for Na + and Cl - should not be used when the Na-Cl distance is small. However, our intention here is not to develoan accurate model of bond-breaking in solution, but rather to explore the singularities that can occur as atomic spheres interpenetrate, and this simple example suffices for that purpose.
-
One could reasonably argue that the use of AMBER 99 point charges is inappropriate for bond-breaking, and that ionic radii for Na + and Cl - should not be used when the Na-Cl distance is small. However, our intention here is not to develop an accurate model of bond-breaking in solution, but rather to explore the singularities that can occur as atomic spheres interpenetrate, and this simple example suffices for that purpose.
-
-
-
-
51
-
-
66249129270
-
-
10.1021/ar800187p
-
A. Klamt, B. Mennucci, J. Tomasi, V. Barone, C. Curutchet, M. Orozco, and F. J. Luque, Acc. Chem. Res. 42, 489 (2009). 10.1021/ar800187p
-
(2009)
Acc. Chem. Res.
, vol.42
, pp. 489
-
-
Klamt, A.1
Mennucci, B.2
Tomasi, J.3
Barone, V.4
Curutchet, C.5
Orozco, M.6
Luque, F.J.7
-
52
-
-
78650854223
-
-
In test calculations using the Adaptive Poisson-Boltzmann Solver, (Ref.), we observed deviations of 0.1 kcal/mol in the solvation energies of randomly selected rotations of alanine, even using coarse grids with x 0.3 for which solvation energies are certainly not converged.
-
In test calculations using the Adaptive Poisson-Boltzmann Solver, (Ref.), we observed deviations of 0.1 kcal/mol in the solvation energies of randomly selected rotations of alanine, even using coarse grids with x 0.3 for which solvation energies are certainly not converged.
-
-
-
-
53
-
-
0035964342
-
Electrostatics of nanosystems: Application to microtubules and the ribosome
-
DOI 10.1073/pnas.181342398
-
N. A. Baker, D. Sept, S. Joseph, M. J. Holst, and J. A. McCammon, Proc. Natl. Acad. Sci. U.S.A. 98, 10037 (2001). 10.1073/pnas.181342398 (Pubitemid 32802969)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.18
, pp. 10037-10041
-
-
Baker, N.A.1
Sept, D.2
Joseph, S.3
Holst, M.J.4
McCammon, J.A.5
-
54
-
-
78650911887
-
-
TINKER, version 4.2.
-
TINKER, version 4.2, http://dasher.wustl.edu/tinker.
-
-
-
-
56
-
-
84961982139
-
An integrated effective fragment-polarizable continuum approach to solvation: Theory and application to glycine
-
DOI 10.1063/1.1433503
-
P. Bandyopadhyay, M. S. Gordon, B. Mennucci, and J. Tomasi, J. Chem. Phys. 116, 5023 (2002). 10.1063/1.1433503 (Pubitemid 34923861)
-
(2002)
Journal of Chemical Physics
, vol.116
, Issue.12
, pp. 5023-5032
-
-
Bandyopadhyay, P.1
Gordon, M.S.2
Mennucci, B.3
Tomasi, J.4
-
57
-
-
77954603689
-
-
10.1063/1.3454683
-
F. Lipparini, G. Scalmani, B. Mennucci, E. Cancs, M. Caricato, and M. J. Frisch, J. Chem. Phys. 133, 014106 (2010). 10.1063/1.3454683
-
(2010)
J. Chem. Phys.
, vol.133
, pp. 014106
-
-
Lipparini, F.1
Scalmani, G.2
Mennucci, B.3
Cancs, E.4
Caricato, M.5
Frisch, M.J.6
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