-
1
-
-
0036278859
-
Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream
-
10.1016/S0301-472X(02)00806-8, 12063017
-
Ginzinger DG. Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Experimental Hematology 2002, 30:503-512. 10.1016/S0301-472X(02)00806-8, 12063017.
-
(2002)
Experimental Hematology
, vol.30
, pp. 503-512
-
-
Ginzinger, D.G.1
-
2
-
-
15744381713
-
Kinetic PCR analysis: real-time monitoring of DNA amplification reactions
-
10.1038/nbt0993-1026, 7764001
-
Higuchi R, Fockler C, Dollinger G, Watson R. Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Biotechnology 1993, 11:1026-1030. 10.1038/nbt0993-1026, 7764001.
-
(1993)
Biotechnology
, vol.11
, pp. 1026-1030
-
-
Higuchi, R.1
Fockler, C.2
Dollinger, G.3
Watson, R.4
-
3
-
-
0029957181
-
Real time quantitative PCR
-
10.1101/gr.6.10.986, 8908518
-
Heid CA, Stevens J, Lival KJ, Williams PM. Real time quantitative PCR. Genome Research 1996, 6:986-994. 10.1101/gr.6.10.986, 8908518.
-
(1996)
Genome Research
, vol.6
, pp. 986-994
-
-
Heid, C.A.1
Stevens, J.2
Lival, K.J.3
Williams, P.M.4
-
4
-
-
33847643776
-
Quantification of mRNA using real-time RT-PCR
-
10.1038/nprot.2006.236, 17406449
-
Nolan T, Hands RE, Bustin SA. Quantification of mRNA using real-time RT-PCR. Nature Protocols 2006, 1:1559-1582. 10.1038/nprot.2006.236, 17406449.
-
(2006)
Nature Protocols
, vol.1
, pp. 1559-1582
-
-
Nolan, T.1
Hands, R.E.2
Bustin, S.A.3
-
5
-
-
0036668567
-
Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems
-
10.1677/jme.0.0290023, 12200227
-
Bustin SA. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. Journal of Molecular Endocrinology 2002, 29:23-39. 10.1677/jme.0.0290023, 12200227.
-
(2002)
Journal of Molecular Endocrinology
, vol.29
, pp. 23-39
-
-
Bustin, S.A.1
-
6
-
-
0033775615
-
Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction
-
10.1677/jme.0.0250169, 11013345
-
Bustin SA. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction. Journal of Molecular Endocrinology 2000, 25:169-193. 10.1677/jme.0.0250169, 11013345.
-
(2000)
Journal of Molecular Endocrinology
, vol.25
, pp. 169-193
-
-
Bustin, S.A.1
-
7
-
-
0346024131
-
Selection of appropriate reference genes to assess expression of tumor antigens using real-time PCR
-
Aerts JL, Gonzalesm MI, Topalian SL. Selection of appropriate reference genes to assess expression of tumor antigens using real-time PCR. Biotechniques 2004, 36:84-91.
-
(2004)
Biotechniques
, vol.36
, pp. 84-91
-
-
Aerts, J.L.1
Gonzalesm, M.I.2
Topalian, S.L.3
-
8
-
-
3142615272
-
Validation of housekeeping genes for normalizing RNA expression in real-time PCR
-
Dheda K, Huggett JF, Bustin SA, Johnson MA, Rook G, Zumla A. Validation of housekeeping genes for normalizing RNA expression in real-time PCR. Biotechniques 2004, 37:112-119.
-
(2004)
Biotechniques
, vol.37
, pp. 112-119
-
-
Dheda, K.1
Huggett, J.F.2
Bustin, S.A.3
Johnson, M.A.4
Rook, G.5
Zumla, A.6
-
9
-
-
0346728757
-
Guideline to reference gene selection for quantitative real-time PCR
-
10.1016/j.bbrc.2003.11.177, 14706621
-
Radonic A, Thulke S, Mackay IM, Landt O, Siegert W, Nitsche A. Guideline to reference gene selection for quantitative real-time PCR. Biochemical and Biophysical Research Communications 2004, 313:856-862. 10.1016/j.bbrc.2003.11.177, 14706621.
-
(2004)
Biochemical and Biophysical Research Communications
, vol.313
, pp. 856-862
-
-
Radonic, A.1
Thulke, S.2
Mackay, I.M.3
Landt, O.4
Siegert, W.5
Nitsche, A.6
-
10
-
-
27644563899
-
The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization
-
10.1016/j.ab.2005.05.022, 16054107
-
Dheda K, Huggett JF, Chang JS, Kim LU, Bustin SA, Johnson MA, Rook GAW, Zumla A. The implications of using an inappropriate reference gene for real-time reverse transcription PCR data normalization. Analytical Biochemistry 2005, 344:141-143. 10.1016/j.ab.2005.05.022, 16054107.
-
(2005)
Analytical Biochemistry
, vol.344
, pp. 141-143
-
-
Dheda, K.1
Huggett, J.F.2
Chang, J.S.3
Kim, L.U.4
Bustin, S.A.5
Johnson, M.A.6
Rook, G.A.W.7
Zumla, A.8
-
11
-
-
21344471138
-
Real-time RT-PCR normalization; strategies and considerations
-
10.1038/sj.gene.6364190, 15815687
-
Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalization; strategies and considerations. Genes and Immunity 2005, 6:279-284. 10.1038/sj.gene.6364190, 15815687.
-
(2005)
Genes and Immunity
, vol.6
, pp. 279-284
-
-
Huggett, J.1
Dheda, K.2
Bustin, S.3
Zumla, A.4
-
13
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal reference genes
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal reference genes. Genome Biology 2002, 3(7):research0034.1-0034.11.
-
(2002)
Genome Biology
, vol.3
, Issue.7
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
14
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
-
10.1023/B:BILE.0000019559.84305.47, 15127793
-
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. Biotechnology Letters 2004, 26:509-515. 10.1023/B:BILE.0000019559.84305.47, 15127793.
-
(2004)
Biotechnology Letters
, vol.26
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
15
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription PCR data: a model based variance estimation approach to identify genes sioted for normalization, applied to bladder and colon cancer data sets
-
10.1158/0008-5472.CAN-04-0496, 15289330
-
Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription PCR data: a model based variance estimation approach to identify genes sioted for normalization, applied to bladder and colon cancer data sets. Cancer Research 2004, 64:5245-5250. 10.1158/0008-5472.CAN-04-0496, 15289330.
-
(2004)
Cancer Research
, vol.64
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
17
-
-
0032518162
-
Activation of stress-activated MAP protein kinases up-regulates expression of transgenes driven by the cytomegalovirus immediate/early promoter
-
10.1093/nar/26.2.486, 147296, 9421504
-
Bruening W, Giasson B, Mushynski W, Durham HD. Activation of stress-activated MAP protein kinases up-regulates expression of transgenes driven by the cytomegalovirus immediate/early promoter. Nucleic Acids Research 1998, 26:486-489. 10.1093/nar/26.2.486, 147296, 9421504.
-
(1998)
Nucleic Acids Research
, vol.26
, pp. 486-489
-
-
Bruening, W.1
Giasson, B.2
Mushynski, W.3
Durham, H.D.4
-
18
-
-
35948992586
-
Chemotherapeutic Agents Up-regulate the Cytomegalovirus Promoter: Implications for Bioluminescence Imaging of Tumor Response to Therapy
-
10.1158/0008-5472.CAN-07-1955, 17974988
-
Svensson RU, Barnes JM, Rokhlin OW, Cohen MB, Henry MD. Chemotherapeutic Agents Up-regulate the Cytomegalovirus Promoter: Implications for Bioluminescence Imaging of Tumor Response to Therapy. Cancer Res 2007, 67:10445-10454. 10.1158/0008-5472.CAN-07-1955, 17974988.
-
(2007)
Cancer Res
, vol.67
, pp. 10445-10454
-
-
Svensson, R.U.1
Barnes, J.M.2
Rokhlin, O.W.3
Cohen, M.B.4
Henry, M.D.5
-
19
-
-
0034854288
-
Activation of pRL-TK by 12S E1A oncoprotein: drawbacks of using an internal reference reporter in transcription assays
-
Thavathiru E, Das GM. Activation of pRL-TK by 12S E1A oncoprotein: drawbacks of using an internal reference reporter in transcription assays. Biotechniques 2001, 31:528-532.
-
(2001)
Biotechniques
, vol.31
, pp. 528-532
-
-
Thavathiru, E.1
Das, G.M.2
-
20
-
-
0036294650
-
Nurr1 affects pRL-TK but not phRG-B internal control plasmid in genetic reporter system
-
10.1016/S0006-291X(02)00601-0, 12074581
-
Matuszyk J, Ziolo E, Cebrat M, Kockel I, Strzadala L. Nurr1 affects pRL-TK but not phRG-B internal control plasmid in genetic reporter system. Biochemical and Biophysical Research Communications 2002, 294:1036-1039. 10.1016/S0006-291X(02)00601-0, 12074581.
-
(2002)
Biochemical and Biophysical Research Communications
, vol.294
, pp. 1036-1039
-
-
Matuszyk, J.1
Ziolo, E.2
Cebrat, M.3
Kockel, I.4
Strzadala, L.5
-
21
-
-
3042609686
-
Activation of the control reporter plasmids pRL-TK and pRL-SV40 by multiple GATA transcription factors can lead to aberrant normalization of transfection efficiency
-
10.1186/1472-6750-4-10, 416485, 15119957
-
Ho CKM, Strauss JF. Activation of the control reporter plasmids pRL-TK and pRL-SV40 by multiple GATA transcription factors can lead to aberrant normalization of transfection efficiency. BMC Biotechnology 2004, 4:10-14. 10.1186/1472-6750-4-10, 416485, 15119957.
-
(2004)
BMC Biotechnology
, vol.4
, pp. 10-14
-
-
Ho, C.K.M.1
Strauss, J.F.2
-
22
-
-
27644569313
-
Investigations of the effectof DNA size in transient transfection assay using dual luciferase system
-
10.1016/j.ab.2005.08.029, 16213455
-
Yin W, Xiang P, Li Q. Investigations of the effectof DNA size in transient transfection assay using dual luciferase system. Analytical Biochemistry 2005, 346:289-294. 10.1016/j.ab.2005.08.029, 16213455.
-
(2005)
Analytical Biochemistry
, vol.346
, pp. 289-294
-
-
Yin, W.1
Xiang, P.2
Li, Q.3
-
23
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method
-
10.1006/meth.2001.1262, 11846609
-
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method. Methods 2001, 25:402-408. 10.1006/meth.2001.1262, 11846609.
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
24
-
-
53349108354
-
Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue
-
10.1186/1471-2199-9-79, 2561043, 18786244
-
Perez R, Tupac-Yupanqui I, Dunner S. Evaluation of suitable reference genes for gene expression studies in bovine muscular tissue. BMC Molecular Biology 2008, 9:79. 10.1186/1471-2199-9-79, 2561043, 18786244.
-
(2008)
BMC Molecular Biology
, vol.9
, pp. 79
-
-
Perez, R.1
Tupac-Yupanqui, I.2
Dunner, S.3
-
25
-
-
63449105583
-
Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR
-
10.1186/1471-2199-10-17, 2661085, 19257903
-
Valente V, Teixeira SA, Neder L, Okamoto OK, Oba-Shinjo SM, Marie SKN, Scrideli CA, Paco-Larson ML, Carlotti CG. Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR. BMC Molecular Biology 2009, 10:17. 10.1186/1471-2199-10-17, 2661085, 19257903.
-
(2009)
BMC Molecular Biology
, vol.10
, pp. 17
-
-
Valente, V.1
Teixeira, S.A.2
Neder, L.3
Okamoto, O.K.4
Oba-Shinjo, S.M.5
Marie, S.K.N.6
Scrideli, C.A.7
Paco-Larson, M.L.8
Carlotti, C.G.9
-
26
-
-
68949207905
-
Reference gene selection for head and neck squamous cell carcinoma gene expression studies
-
10.1186/1471-2199-10-78, 2729078, 19650912
-
Lallemant B, Evrard A, Combescure C, Chapuis H, Chambon G, Raynal C, Reynaud C, Sabra O, Joubert D, Hollande F, Lallemant JG, Lumbroso S, Brouillet JP. Reference gene selection for head and neck squamous cell carcinoma gene expression studies. BMC Molecular Biology 2009, 10:78. 10.1186/1471-2199-10-78, 2729078, 19650912.
-
(2009)
BMC Molecular Biology
, vol.10
, pp. 78
-
-
Lallemant, B.1
Evrard, A.2
Combescure, C.3
Chapuis, H.4
Chambon, G.5
Raynal, C.6
Reynaud, C.7
Sabra, O.8
Joubert, D.9
Hollande, F.10
Lallemant, J.G.11
Lumbroso, S.12
Brouillet, J.P.13
-
27
-
-
0344688140
-
Validation of reference genes for transcription profiling in the salmon louse Lepeophtheirus salmonis by quantitative real-time PCR
-
Frost P, Nilsen F. Validation of reference genes for transcription profiling in the salmon louse Lepeophtheirus salmonis by quantitative real-time PCR. Vet Parasitology 2003, 118:169-174.
-
(2003)
Vet Parasitology
, vol.118
, pp. 169-174
-
-
Frost, P.1
Nilsen, F.2
-
28
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
10.1016/S0022-2836(83)80284-8, 6345791
-
Hanahan D. Studies on transformation of Escherichia coli with plasmids. Journal of Molecular Biology 1983, 166:557-580. 10.1016/S0022-2836(83)80284-8, 6345791.
-
(1983)
Journal of Molecular Biology
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
29
-
-
36749071435
-
Escherichia coli physiology in Luria-Bertani broth
-
10.1128/JB.01368-07, 2168924, 17905994
-
Sezonov G, Joseleau-Petit D, D'Ari R. Escherichia coli physiology in Luria-Bertani broth. Journal of Bacteriology 2007, 189:8746-8749. 10.1128/JB.01368-07, 2168924, 17905994.
-
(2007)
Journal of Bacteriology
, vol.189
, pp. 8746-8749
-
-
Sezonov, G.1
Joseleau-Petit, D.2
D'Ari, R.3
-
30
-
-
0017710978
-
Characteristics of a human cell line transformed by DNA from human adenovirus Type 5
-
10.1099/0022-1317-36-1-59, 886304
-
Graham FL, Smiley J, Russell WC, Nairn R. Characteristics of a human cell line transformed by DNA from human adenovirus Type 5. Journal of General Virology 1977, 36:59-72. 10.1099/0022-1317-36-1-59, 886304.
-
(1977)
Journal of General Virology
, vol.36
, pp. 59-72
-
-
Graham, F.L.1
Smiley, J.2
Russell, W.C.3
Nairn, R.4
-
31
-
-
77949667195
-
Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene
-
10.1371/journal.pone.0009545, 2832698, 20221433
-
Hou Y, Zhang H, Miranda L, Lin S. Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. PLoS ONE 2010, 5:e9545. 10.1371/journal.pone.0009545, 2832698, 20221433.
-
(2010)
PLoS ONE
, vol.5
-
-
Hou, Y.1
Zhang, H.2
Miranda, L.3
Lin, S.4
-
32
-
-
0142071135
-
A method for using absolute quantification of cDNA using real-time PCR
-
10.1016/S0022-1759(03)00223-0, 12957413
-
Whelan JA, Russell NB, Whelan MA. A method for using absolute quantification of cDNA using real-time PCR. Journal of Immunological Methods 2003, 278:261-269. 10.1016/S0022-1759(03)00223-0, 12957413.
-
(2003)
Journal of Immunological Methods
, vol.278
, pp. 261-269
-
-
Whelan, J.A.1
Russell, N.B.2
Whelan, M.A.3
-
33
-
-
33746199793
-
Genomic DNA functions as a universal external standard in quantitative real-time PCR
-
10.1093/nar/gkl400, 1524913, 16840529
-
Yun JJ, Heisler LE, Hwang IIL, Wilkins O, Lau SK, Hyrcza M, Jayabalasingham B, Jin J, McLaurin J, Tsao MS, Der SD. Genomic DNA functions as a universal external standard in quantitative real-time PCR. Nucleic Acids Research 2006, 34:e85. 10.1093/nar/gkl400, 1524913, 16840529.
-
(2006)
Nucleic Acids Research
, vol.34
-
-
Yun, J.J.1
Heisler, L.E.2
Hwang, I.I.L.3
Wilkins, O.4
Lau, S.K.5
Hyrcza, M.6
Jayabalasingham, B.7
Jin, J.8
McLaurin, J.9
Tsao, M.S.10
Der, S.D.11
-
34
-
-
67650521193
-
JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling
-
Proceedings of the 3rd International Workshop on Distributed Statistical Computing
-
Plummer M. JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. 2003, Proceedings of the 3rd International Workshop on Distributed Statistical Computing.
-
(2003)
-
-
Plummer, M.1
-
35
-
-
41149087694
-
CODA: Convergence Diagnosis and Output Analysis for MCMC
-
Plummer M, Best N, Cowles K, Vines K. CODA: Convergence Diagnosis and Output Analysis for MCMC. R News 2006, 6:11-17.
-
(2006)
R News
, vol.6
, pp. 11-17
-
-
Plummer, M.1
Best, N.2
Cowles, K.3
Vines, K.4
|