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Volumn 107, Issue 51, 2010, Pages 22140-22144

RNA-mediated epigenetic regulation of DNA copy number

Author keywords

Copy number variation; Genome rearrangement

Indexed keywords

RNA;

EID: 78650644338     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1012236107     Document Type: Article
Times cited : (64)

References (40)
  • 1
    • 46249105777 scopus 로고    scopus 로고
    • Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
    • Emerson JJ, Cardoso-Moreira M, Borevitz JO, Long M (2008) Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster. Science 320:1629-1631.
    • (2008) Science , vol.320 , pp. 1629-1631
    • Emerson, J.J.1    Cardoso-Moreira, M.2    Borevitz, J.O.3    Long, M.4
  • 2
    • 34347354302 scopus 로고    scopus 로고
    • Mutational and selective effects on copy-number variants in the human genome
    • Cooper GM, Nickerson DA, Eichler EE (2007) Mutational and selective effects on copy-number variants in the human genome. Nat Genet 39 (7 suppl):S22-S29.
    • (2007) Nat Genet , vol.39 , Issue.7 SUPPL.
    • Cooper, G.M.1    Nickerson, D.A.2    Eichler, E.E.3
  • 3
    • 44949159619 scopus 로고    scopus 로고
    • The current excitement about copy-number variation: How it relates to gene duplications and protein families
    • Korbel JO, et al. (2008) The current excitement about copy-number variation: How it relates to gene duplications and protein families. Curr Opin Struct Biol 18:366-374.
    • (2008) Curr Opin Struct Biol , vol.18 , pp. 366-374
    • Korbel, J.O.1
  • 4
    • 38049150491 scopus 로고    scopus 로고
    • A portrait of copy-number polymorphism in Drosophila melanogaster
    • Dopman EB, Hartl DL (2007) A portrait of copy-number polymorphism in Drosophila melanogaster. Proc Natl Acad Sci USA 104:19920-19925.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 19920-19925
    • Dopman, E.B.1    Hartl, D.L.2
  • 5
    • 0036829790 scopus 로고    scopus 로고
    • Impact of DNA amplification on gene expression patterns in breast cancer
    • Hyman E, et al. (2002) Impact of DNA amplification on gene expression patterns in breast cancer. Cancer Res 62:6240-6245.
    • (2002) Cancer Res , vol.62 , pp. 6240-6245
    • Hyman, E.1
  • 6
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • Pollack JR, et al. (2002) Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci USA 99:12963-12968.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 12963-12968
    • Pollack, J.R.1
  • 7
    • 34748895999 scopus 로고    scopus 로고
    • Diet and the evolution of human amylase gene copy number variation
    • Perry GH, et al. (2007) Diet and the evolution of human amylase gene copy number variation. Nat Genet 39:1188-1190.
    • (2007) Nat Genet , vol.39 , pp. 1188-1190
    • Perry, G.H.1
  • 8
    • 84966164707 scopus 로고
    • Molecular aspects of the environmental induction of heritable changes in flax
    • Cullis CA (1977) Molecular aspects of the environmental induction of heritable changes in flax. Heredity 38:129-154.
    • (1977) Heredity , vol.38 , pp. 129-154
    • Cullis, C.A.1
  • 9
    • 0035895278 scopus 로고    scopus 로고
    • Genetic architecture of thermal adaptation in Escherichia coli
    • Riehle MM, Bennett AF, Long AD (2001) Genetic architecture of thermal adaptation in Escherichia coli. Proc Natl Acad Sci USA 98:525-530.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 525-530
    • Riehle, M.M.1    Bennett, A.F.2    Long, A.D.3
  • 10
    • 0037058930 scopus 로고    scopus 로고
    • Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
    • Dunham MJ, et al. (2002) Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 99:16144-16149.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 16144-16149
    • Dunham, M.J.1
  • 11
    • 0347361696 scopus 로고    scopus 로고
    • Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast
    • Infante JJ, Dombek KM, Rebordinos L, Cantoral JM, Young ET (2003) Genome-wide amplifications caused by chromosomal rearrangements play a major role in the adaptive evolution of natural yeast. Genetics 165:1745-1759.
    • (2003) Genetics , vol.165 , pp. 1745-1759
    • Infante, J.J.1    Dombek, K.M.2    Rebordinos, L.3    Cantoral, J.M.4    Young, E.T.5
  • 12
    • 35948991932 scopus 로고    scopus 로고
    • Copy number variant sand common disorders: Filling the gaps and exploring complexity in genome-wide association studies
    • Estivill X, Armengol L (2007) Copy number variant sand common disorders: Filling the gaps and exploring complexity in genome-wide association studies. PLoS Genet 3:1787-1799.
    • (2007) PLoS Genet , vol.3 , pp. 1787-1799
    • Estivill, X.1    Armengol, L.2
  • 13
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • Sebat J, et al. (2004) Large-scale copy number polymorphism in the human genome. Science 305:525-528.
    • (2004) Science , vol.305 , pp. 525-528
    • Sebat, J.1
  • 14
    • 26444577882 scopus 로고    scopus 로고
    • Copy number polymorphism and expression level variation of the human alpha-defensin genes DEFA1 and DEFA3
    • Aldred PMR, Hollox EJ, Armour JA (2005) Copy number polymorphism and expression level variation of the human alpha-defensin genes DEFA1 and DEFA3. Hum Mol Genet 14:2045-2052.
    • (2005) Hum Mol Genet , vol.14 , pp. 2045-2052
    • Aldred, P.M.R.1    Hollox, E.J.2    Armour, J.A.3
  • 15
    • 20044377204 scopus 로고    scopus 로고
    • The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility
    • Gonzalez E, et al. (2005) The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility. Science 307:1434-1440.
    • (2005) Science , vol.307 , pp. 1434-1440
    • Gonzalez, E.1
  • 16
    • 34247481814 scopus 로고    scopus 로고
    • Strong association of de novo copy number mutations with autism
    • Sebat J, et al. (2007) Strong association of de novo copy number mutations with autism. Science 316:445-449.
    • (2007) Science , vol.316 , pp. 445-449
    • Sebat, J.1
  • 17
    • 0033551238 scopus 로고    scopus 로고
    • Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells
    • Klein CA, et al. (1999) Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc Natl Acad Sci USA 96:4494-4499.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4494-4499
    • Klein, C.A.1
  • 18
    • 0033674221 scopus 로고    scopus 로고
    • Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representations
    • Lucito R, et al. (2000) Detecting gene copy number fluctuations in tumor cells by microarray analysis of genomic representations. Genome Res 10:1726-1736.
    • (2000) Genome Res , vol.10 , pp. 1726-1736
    • Lucito, R.1
  • 19
    • 0034940225 scopus 로고    scopus 로고
    • Quantitative analysis of chromosomal CGH in human breast tumors associates copy number abnormalities with p53 status and patient survival
    • Jain AN, et al. (2001) Quantitative analysis of chromosomal CGH in human breast tumors associates copy number abnormalities with p53 status and patient survival. Proc Natl Acad Sci USA 98:7952-7957.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7952-7957
    • Jain, A.N.1
  • 20
    • 0038037230 scopus 로고    scopus 로고
    • Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma
    • Snijders AM, et al. (2003) Genome-wide-array-based comparative genomic hybridization reveals genetic homogeneity and frequent copy number increases encompassing CCNE1 in fallopian tube carcinoma. Oncogene 22:4281-4286.
    • (2003) Oncogene , vol.22 , pp. 4281-4286
    • Snijders, A.M.1
  • 21
    • 27144454948 scopus 로고    scopus 로고
    • Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations
    • van de Wiel MA, et al. (2005) Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations. Cancer Res 65:10208-10213.
    • (2005) Cancer Res , vol.65 , pp. 10208-10213
    • Van De Wiel, M.A.1
  • 22
    • 33644906665 scopus 로고    scopus 로고
    • Combined genome-wide allelotyping and copy number analysis identify frequent genetic losses without copy number reduction in medulloblastoma
    • Langdon JA, et al. (2006) Combined genome-wide allelotyping and copy number analysis identify frequent genetic losses without copy number reduction in medulloblastoma. Genes Chromosomes Cancer 45:47-60.
    • (2006) Genes Chromosomes Cancer , vol.45 , pp. 47-60
    • Langdon, J.A.1
  • 23
    • 0028231010 scopus 로고
    • The DNA of ciliated protozoa
    • Prescott DM (1994) The DNA of ciliated protozoa. Microbiol Rev 58:233-267.
    • (1994) Microbiol Rev , vol.58 , pp. 233-267
    • Prescott, D.M.1
  • 25
    • 0025877940 scopus 로고
    • Overamplification of macronuclear linear DNA molecules during prolonged vegetative growth of Oxytricha nova
    • Harper DS, Song K, Jahn CL (1991) Overamplification of macronuclear linear DNA molecules during prolonged vegetative growth of Oxytricha nova. Gene 99:55-61.
    • (1991) Gene , vol.99 , pp. 55-61
    • Harper, D.S.1    Song, K.2    Jahn, C.L.3
  • 26
    • 0026130016 scopus 로고
    • Differential DNA amplification and copy number control in the hypotrichous ciliate Euplotes crassus
    • Baird SE, Klobutcher LA (1991) Differential DNA amplification and copy number control in the hypotrichous ciliate Euplotes crassus. J Protozool 38:136-140.
    • (1991) J Protozool , vol.38 , pp. 136-140
    • Baird, S.E.1    Klobutcher, L.A.2
  • 27
    • 0024117964 scopus 로고
    • Genetic characterization and use of a restriction fragment length variant in the hypotrichous ciliate Euplotes crassus
    • Baird SE, Klobutcher LA (1988) Genetic characterization and use of a restriction fragment length variant in the hypotrichous ciliate Euplotes crassus. J Protozool 35: 459-465.
    • (1988) J Protozool , vol.35 , pp. 459-465
    • Baird, S.E.1    Klobutcher, L.A.2
  • 28
    • 0026775362 scopus 로고
    • Primary structure of a gene-sized DNA encoding calmodulin from the hypotrichous ciliate Stylonychia lemnae
    • Gaunitz C, Witte H, Gaunitz F (1992) Primary structure of a gene-sized DNA encoding calmodulin from the hypotrichous ciliate Stylonychia lemnae. Gene 119:191-198.
    • (1992) Gene , vol.119 , pp. 191-198
    • Gaunitz, C.1    Witte, H.2    Gaunitz, F.3
  • 29
    • 0003415067 scopus 로고
    • Overamplification of genes in macronuclei of hypotrichous ciliates
    • Steinbruck G (1983) Overamplification of genes in macronuclei of hypotrichous ciliates. Chromosoma 88:156-163.
    • (1983) Chromosoma , vol.88 , pp. 156-163
    • Steinbruck, G.1
  • 30
    • 1942444653 scopus 로고    scopus 로고
    • Modeling senescence in hypotrichous ciliates
    • Duerr HP, Eichner M, Ammermann D (2004) Modeling senescence in hypotrichous ciliates. Protist 155:45-52.
    • (2004) Protist , vol.155 , pp. 45-52
    • Duerr, H.P.1    Eichner, M.2    Ammermann, D.3
  • 31
    • 0023445717 scopus 로고
    • Multiple sequence versions of the Oxytricha fallax 81-MAC alternate processing family
    • Herrick GS, Cartinhour SW, Williams KR, Kotter KP (1987) Multiple sequence versions of the Oxytricha fallax 81-MAC alternate processing family. J Protozool 34: 429-434.
    • (1987) J Protozool , vol.34 , pp. 429-434
    • Herrick, G.S.1    Cartinhour, S.W.2    Williams, K.R.3    Kotter, K.P.4
  • 32
    • 38049186458 scopus 로고    scopus 로고
    • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    • Nowacki M, et al. (2008) RNA-mediated epigenetic programming of a genome- rearrangement pathway. Nature 451:153-158.
    • (2008) Nature , vol.451 , pp. 153-158
    • Nowacki, M.1
  • 33
    • 4344648254 scopus 로고    scopus 로고
    • RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia
    • Garnier O, Serrano V, Duharcourt S, Meyer E (2004) RNA-mediated programming of developmental genome rearrangements in Paramecium tetraurelia. Mol Cell Biol 24: 7370-7379.
    • (2004) Mol Cell Biol , vol.24 , pp. 7370-7379
    • Garnier, O.1    Serrano, V.2    Duharcourt, S.3    Meyer, E.4
  • 34
    • 4444383501 scopus 로고    scopus 로고
    • Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement
    • Mochizuki K, Gorovsky MA (2004) Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement. Genes Dev 18:2068-2073.
    • (2004) Genes Dev , vol.18 , pp. 2068-2073
    • Mochizuki, K.1    Gorovsky, M.A.2
  • 35
    • 44849120634 scopus 로고    scopus 로고
    • Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia
    • Lepére G, Betermier M, Meyer E, Duharcourt S (2008) Maternal noncoding transcripts antagonize the targeting of DNA elimination by scanRNAs in Paramecium tetraurelia. Genes Dev 22:1501-1512.
    • (2008) Genes Dev , vol.22 , pp. 1501-1512
    • Lepére, G.1    Betermier, M.2    Meyer, E.3    Duharcourt, S.4
  • 36
    • 0033824511 scopus 로고    scopus 로고
    • Timing of life cycle morphogenesis in synchronous samples of Sterkiella histriomuscorum. II. The sexual pathway
    • Adl SM, Berger JD (2000) Timing of life cycle morphogenesis in synchronous samples of Sterkiella histriomuscorum. II. The sexual pathway. J Eukaryot Microbiol 47:443-449.
    • (2000) J Eukaryot Microbiol , vol.47 , pp. 443-449
    • Adl, S.M.1    Berger, J.D.2
  • 37
    • 0036137143 scopus 로고    scopus 로고
    • RNA interference by feeding in Paramecium
    • Galvani A, Sperling L (2002) RNA interference by feeding in Paramecium. Trends Genet 18:11-12.
    • (2002) Trends Genet , vol.18 , pp. 11-12
    • Galvani, A.1    Sperling, L.2
  • 38
    • 0027426052 scopus 로고
    • Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplication
    • Williams K, Doak TG, Herrick G (1993) Developmental precise excision of Oxytricha trifallax telomere-bearing elements and formation of circles closed by a copy of the flanking target duplication. EMBO J 12:4593-4601.
    • (1993) EMBO J , vol.12 , pp. 4593-4601
    • Williams, K.1    Doak, T.G.2    Herrick, G.3
  • 39
    • 3042764655 scopus 로고    scopus 로고
    • A micronuclear locus containing three protein-coding genes remains linked during macronuclear development in the spirotrichous ciliate Holosticha
    • Chang W-J, Stover NA, Addis VM, Landweber LF (2004) A micronuclear locus containing three protein-coding genes remains linked during macronuclear development in the spirotrichous ciliate Holosticha. Protist 155:245-255.
    • (2004) Protist , vol.155 , pp. 245-255
    • Chang, W.-J.1    Stover, N.A.2    Addis, V.M.3    Landweber, L.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.