Creation of a type 1 blue copper site within a de novo coiled-coil protein scaffold

Journal of the American Chemical Society

Volumn 132, Issue 51, 2010, Pages 18191-18198

  Shiga, Daigo ^a   Nakane, Daisuke ^a   Inomata, Tomohiko ^a   Funahashi, Yasuhiro ^a   Masuda, Hideki ^a   Kikuchi, Akihiro ^b   Oda, Masayuki ^c   Noda, Masanori ^d   Uchiyama, Susumu ^d   Fukui, Kiichi ^d   Kanaori, Kenji ^e   Tajima, Kunihiko ^e   Takano, Yu ^d   Nakamura, Haruki ^d   Tanaka, Toshiki ^a  

^a NAGOYA INSTITUTE OF TECHNOLOGY   (Japan)

^b RIKEN SPring 8 Center   (Japan)

^c KYOTO PREFECTURAL UNIVERSITY   (Japan)

^d OSAKA UNIVERSITY   (Japan)

^e KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AXIAL LIGAND; BLUE-COPPER PROTEINS; COILED-COIL PROTEINS; COORDINATION ENVIRONMENT; COPPER SITES; CYS RESIDUES; ELECTRON PARAMAGNETIC RESONANCE; EQUATORIAL LIGANDS; EXTENDED X-RAY ABSORPTION FINE STRUCTURE ANALYSIS; FAST ELECTRONS; HELICAL COILED-COIL; HYDROPHOBIC CORE; LIGAND-TO-METAL CHARGE TRANSFERS; NORMAL HYDROGEN ELECTRODES; PLANAR GEOMETRIES; REDOX POTENTIALS; SPECTRAL ANALYSIS; THIOLATES; UV-VIS SPECTRA; X-RAY ABSORPTION SPECTRUM;

ABSORPTION; ABSORPTION SPECTROSCOPY; CHARGE TRANSFER; COPPER; ELECTRON SPIN RESONANCE SPECTROSCOPY; GEOMETRY; ION EXCHANGE; LIGANDS; PARAMAGNETIC RESONANCE; PARAMAGNETISM; REACTION RATES; REDOX REACTIONS; SCAFFOLDS; SPECTRUM ANALYSIS; X RAY ABSORPTION;

PROTEINS;

COPPER PROTEIN; SCAFFOLD PROTEIN;

ABSORPTION SPECTROSCOPY; ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; COMPLEX FORMATION; ELECTRON SPIN RESONANCE; FAST ELECTRON RADIATION; GEOMETRY; LIGAND BINDING; OXIDATION REDUCTION REACTION; PH ELECTRODE; PROTEIN ANALYSIS; PROTEIN STRUCTURE; TITRIMETRY; ULTRAVIOLET RADIATION;

ABSORPTIOMETRY, PHOTON; AMINO ACID SEQUENCE; BINDING SITES; CARRIER PROTEINS; CATALYTIC DOMAIN; COPPER; ELECTRON SPIN RESONANCE SPECTROSCOPY; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PROTEIN STRUCTURE, SECONDARY; SPECTROPHOTOMETRY, ULTRAVIOLET;

EID: 78650604377     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja106263y     Document Type: Article

References (47)

1. Kaplan, J. and DeGrado, W. F. Proc. Natl. Acad. Sci. USA. 2004, 101, 11566-11570
2. Ghosh, D. and Pecoraro, V. Curr. Opin. Chem. Biol. 2005, 9, 97-103
3. Koder, R. L., Ross Anderson, J. L., Solomon, L. A., Reddy, K. S., Moser, C. C., and Dutton, P. L. Nature 2009, 458, 305-309
4. Lu, Y., Yeung, N., Sieracki, N., and Marshall, N. M. Nature 2009, 460, 855-862
5. Canters, G. W. and Gilardi, G. FEBS Lett. 1993, 325, 39-42
6. Adman, E. T. Adv. Protein Chem. 1991, 42, 145-197
7. Solomon, E. I., Sundaram, U. M., and Machonkin, T. E. Chem. Rev. 1996, 96, 2563-2605
8. Solomon, E. I., Chen, P., Metz, M., Lee, S.-K., and Palmer, A. E. Angew. Chem., Int. Ed. Engl. 2001, 40, 4570-4590
9. Stewart, L. C. and Klinman, J. P. Annu. Rev. Biochem. 1988, 57, 551-592
10. Prigge, S. T., Mains, R. E., Eipper, B. A., and Amzel, L. M. Cell. Mol. Life Sci. 2000, 57, 1236-1259
11. Zumft, W. G., Dreusch, A., Lochelt, S., Cuypers, H., Friedrich, B., and Schneider, B. Eur. J. Biochem. 1992, 208, 31-40
12. Magnus, K. A., Ton-That, H., and Carpenter, J. E. Chem. Rev. 1994, 94, 727-735
13. Solomon, E. I., Baldwin, M. J., and Lowery, M. D. Chem. Rev. 1992, 92, 521-542
14. Solomon, E. I., Lowery, M. D., LaCroix, L. B., and Root, D. E. Methods Enzymol. 1993, 226, 1-33
15. Messerschmidt, A., Huber, R., Poulos, T., and Wieghardt, K., Eds. Handbook of metalloproteins 2; Wiley: New York, 2001; Chapter Type-1 copper proteins, Multicopper Enzymes.
16. ; dissociation constant; EPR, electron paramagnetic resonance; NHE, normal hydrogen electrode; XANES, X-ray absorption near edge structure; EXAFS, extended X-ray absorption fine structure.
17. Bonander, N., Karlsson, B. G., and Vänngard, T. Biochemistry 1996, 35, 2429-2436
18. Suzuki, S., Kataoka, K., and Yamaguchi, K. Acc. Chem. Res. 2000, 33, 728-735
19. Hellinga, H. W. J. Am. Chem. Soc. 1998, 120, 10055-10066
20. Maret, W., Dietrich, H., Ruf, H.-H., and Zeppezauer, M. J. Inorg. Biochem. 1980, 12, 241-252
21. Lu, Y., LaCroix, L. B., Lowery, M. D., Solomon, E. I., Bender, C. J., Peisach, J., Roe, J. A., Gralla, E. B., and Valentine, J. S. J. Am. Chem. Soc. 1993, 115, 5907-5918
22. Schnepf, R., Haehnel, W., Wieghardt, K., and Hildebrandt, P. J. Am. Chem. Soc. 2004, 126, 14389-14399
23. Brader, M. L., Borchardt, D., and Dunn, M. F. J. Am. Chem. Soc. 1992, 114, 4480-4486
24. Shiga, D., Nakane, D., Inomata, T., Masuda, H., Oda, M., Noda, M., Uchiyama, S., Fukui, K., Takano, Y., Nakamura, H., Mizuno, T., and Tanaka, T. Biopolymers 2009, 91, 907-916
25. Daugherty, R. G., Wasowicz, T., Gibney, B. R., and DeRose, V. J. Inorg. Chem. 2002, 41, 2623-2638
26. Sakurai, Y., Mizuno, T., Hiroaki, H., Oku, J., and Tanaka, T. J. Peptide Res. 2005, 66, 387-394
27. Harbury, P. B., Zhang, T., Kim, P. S., and Alber, T. Science 1993, 262, 1401-1407
28. Solomon, E. I., Szilagyi, R. K., George, S. D., and Basumallick, L. Chem. Rev. 2004, 104, 419-458
29. den Blaauwen, T. and Canters, G. W. J. Am. Chem. Soc. 1993, 115, 1121-1129
30. Vallet, V., Wahlgren, U., and Grenthe, I. J. Am. Chem. Soc. 2003, 125, 14941-14950
31. -1 (1.5 mT), and line width δ = 6.4 mT.
32. den Blaauwen, T., Hoitink, C. W. G., Canters, G. W., Han, J., Loehr, T. M., and Sanders-Loehr, J. Biochemistry 1993, 32, 12455-12464
33. Li, H., Webb, S. P., Ivanic, J., and Jensen, J. H. J. Am. Chem. Soc. 2004, 126, 8010-8019
34. Bard, A. J. and Faulkner, L. R. Electrochemical Methods: Fundamentals and Applications, 2nd ed.; Wiley: New York, 2001.
35. Koch, M., Velarde, M., Harrison, M. D., Echt, S., Fischer, M., Messerschmidt, A., and Dennison, C. J. Am. Chem. Soc. 2005, 127, 158-166
36. Marks, J., Pozdnyakova, I., and Guidry, J. J. Biol. Inorg. Chem. 2004, 9, 281-288
37. Marshall, N. M., Garner, D. K., Wilson, T. D., Gao, Y.-G., Robinson, H., Nilges, M. J., and Lu, Y. Nature 2009, 462, 113-116
38. Schuck, P. Biophys. J. 2000, 78, 1606-1619
39. Ressler, T. J. Synchrotron Radiat. 1998, 5, 118-122
40. Ankudinov, A. L., Ravel, B., Rehr, J. J., and Conradson, S. D. Phys. Rev. 1998, B 58, 7565
41. Guex, N. and Peitsch, M. C. Electrophoresis 1997, 18, 2714-2723
42. Mittl, P. R. E., Deillon, C., Sargent, D., Liu, N., Klauser, S., Thomas, R. M., Gutte, B., and Grütter, M. G. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 2562-2566l
43. Canutescu, A. A., Shelenkov, A. A., and Dunbrack, R. L., Jr. Protein Sci. 2003, 12, 2001-2014
44. Fukunishi, Y., Mikami, Y., and Nakamura, H. J. Phys. Chem. B 2003, 107, 13201-13210
45. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L. J. Chem. Phys. 1983, 79, 926-935
46. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Jr, Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A. J. Am. Chem. Soc. 1995, 117, 5179-5197
47. Kollman, P. A., Dixon, R., Cornell, W., Fox, T., Chipot, C., and Pohorille, A. In Computer Simulation of Biomolecular Systems; Wilkinson, A., Weiner, P., and van Gunsteren, W. F., Eds.; Elsevier: New York, 1997; Vol. 3, pp 83 - 96.