Detection of GI and GII Noroviruses in Ground Water Using Ultrafiltration and TaqMan Real-time RT-PCR

Food and Environmental Virology

Volumn 2, Issue 4, 2010, Pages 218-224

  Hill, Vincent R ^a   Mull, Bonnie ^a,c   Jothikumar, Narayanan ^a   Ferdinand, Karen ^b,c   Vinjé, Jan ^b  

^a NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

^b NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

^c ATLANTA RESEARCH AND EDUCATION FOUNDATION   (United States)

Author keywords

Ground water; Norovirus; Real time RT PCR; Ultrafiltration

Indexed keywords

GROUND WATER;

ARTICLE; CONTROLLED STUDY; ELECTRON MICROSCOPY; HOLLOW FIBER; NONHUMAN; NOROVIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ULTRAFILTRATION; VIRUS DETECTION; WATER CONTAMINATION; WATER SAMPLING;

NOROVIRUS;

EID: 78650523009     PISSN: 18670334     EISSN: 18670342     Source Type: Journal    
DOI: 10.1007/s12560-010-9049-y     Document Type: Article

References (29)

1. Baert, L., Uyttendaele, M., & Debevere, J. (2008). Evaluation of viral extraction methods on a broad range of ready-to-eat foods with conventional and real-time RT-PCR for Norovirus GII detection. International Journal of Food Microbiology, 123, 101-108.
2. Cannon, J., & Vinje, J. (2008). Foodborne viruses. In E. Palombo & C. Kirkwood (Eds.), Viruses in the environment (1st ed., pp. 45-76). Ames: Iowa State Press.
3. Costantini, V., Grenz, L., Fritzinger, A., Lewis, D., Biggs, C., Hale, A., et al. (2010). Diagnostic accuracy and analytical sensitivity of IDEIA norovirus assay for routine screening of human norovirus. Journal of Clinical Microbiology, 48, 2770-2778.
4. Gabrieli, R., Maccari, F., Ruta, A., Paná, A., & Divizia, M. (2009). Norovirus detection in groundwater. Food and Environmental Virology, 1, 92-96.
5. Gentry, J., Vinje, J., Guadagnoli, D., & Lipp, E. K. (2009a). Norovirus distribution within an estuarine environment. Applied and Environmental Microbiology, 75, 5474-5480.
6. Gentry, J., Vinje, J., & Lipp, E. K. (2009b). A rapid and efficient method for quantitation of genogroups I and II norovirus from oysters and application in other complex environmental samples. Journal of Virological Methods, 156, 59-65.
7. Glass, R. I., Parashar, U. D., & Estes, M. K. (2009). Norovirus gastroenteritis. New England Journal of Medicine, 361, 1776-1785.
8. Guttman-Bass, N., & Catalano-Sherman, J. (1986). Humic-acid interference with virus recovery by electropositive microporous filters. Applied and Environmental Microbiology, 52, 556-561.
9. Hamza, I. A., Jurzik, L., Stang, A., Sure, K., Uberla, K., & Wilhelm, M. (2009). Detection of human viruses in rivers of a densly-populated area in Germany using a virus adsorption elution method optimized for PCR analyses. Water Research, 43, 2657-2668.
10. Hernandez-Morga, J., Leon-Felix, J., Peraza-Garay, F., Gil-Salas, B. G., & Chaidez, C. (2009). Detection and characterization of hepatitis A virus and norovirus in estuarine water samples using ultrafiltration-RT-PCR integrated methods. Journal of Applied Microbiology, 106, 1579-1590.
11. Hewitt, J., Bell, D., Simmons, G. C., Rivera-Aban, M., Wolf, S., & Greening, G. E. (2007). Gastroenteritis outbreak caused by waterborne norovirus at a New Zealand ski resort. Applied and Environmental Microbiology, 73, 7853-7857.
12. Hill, V. R., Kahler, A. M., Jothikumar, N., Johnson, T. B., Hahn, D., & Cromeans, T. L. (2007). Multistate evaluation of an ultrafiltration-based procedure for simultaneous recovery of enteric microbes in 100-liter tap water samples. Applied and Environmental Microbiology, 73, 4218-4225.
13. Huffman, D. E., Nelson, K. L., & Rose, J. B. (2003). Calicivirus-an emerging contaminant in water: state of the art. Environmental Engineering Science, 20, 503-515.
14. Hunt, R. J., Borchardt, M. A., Richards, K. D., & Spencer, S. K. (2010). Assessment of sewer source contamination of drinking water wells using tracers and human enteric viruses. Environmental Science and Technology, 44, 7956-7963.
15. Jothikumar, N., Lowther, J. A., Henshilwood, K., Lees, D. N., Hill, V. R., & Vinje, J. (2005). Rapid and sensitive detection of noroviruses by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples. Applied and Environmental Microbiology, 71, 1870-1875.
16. Kageyama, T., Kojima, S., Shinohara, M., Uchida, K., Fukushi, S., Hoshino, F. B., et al. (2003). Broadly reactive and highly sensitive assay for Norwalk-like viruses based on real-time quantitative reverse transcription-PCR. Journal of Clinical Microbiology, 41, 1548-1557.
17. Kaplan, J. E., Feldman, R., Campbell, D. S., Lookabaugh, C., & Gary, G. W. (1982). The frequency of a Norwalk-like pattern of illness in outbreaks of acute gastroenteritis. American Journal of Public Health, 72, 1329-1332.
18. Lambertini, E., Spencer, S. K., Bertz, P. D., Loge, F. J., Kieke, B. A., & Borchardt, M. A. (2008). Concentration of enteroviruses, adenoviruses, and noroviruses from drinking water by use of glass wool filters. Applied and Environmental Microbiology, 74, 2990-2996.
19. Liang, J. L., Dziuban, E. J., Craun, G. F., Hill, V., Moore, M. R., Gelting, R. J., et al. (2006). Surveillance for waterborne disease and outbreaks associated with drinking water and water not intended for drinking-United States, 2003-2004. Morbidity and Mortality Weekly Report, 55, 31-65.
20. Lukasik, J., Scott, T. M., Andryshak, D., & Farrah, S. R. (2000). Influence of salts on virus adsorption to microporous filters. Applied and Environmental Microbiology, 66, 2914-2920.
21. Ngazoa, E. S., Fliss, I., & Jean, J. (2008). Quantitative study of persistence of human norovirus genome in water using TaqMan real-time RT-PCR. Journal of Applied Microbiology, 104, 707-715.
22. O'Reilly, C. E., Bowen, A. B., Perez, N. E., Sarisky, J. P., Miller, M. D., Hubbard, B. C., et al. (2007). A waterborne outbreak of gastroenteritis with multiple etiologies among resort island visitors and residents: Ohio, 2004. Clinical Infectious Diseases, 44, 506-512.
23. Park, Y., Cho, Y. H., Jee, Y., & Ko, G. (2008). Immunomagnetic separation combined with real-time reverse transcriptase PCR assays for detection of norovirus in contaminated food. Applied and Environmental Microbiology, 74, 4226-4230.
24. Polaczyk, A. L., Jothikumar, N., Cromeans, T. L., Hahn, D., Roberts, J. M., Amburgey, J. E., et al. (2008). Ultrafiltration-based techniques for rapid and simultaneous concentration of multiple microbe classes from 100-L tap water samples. Journal of Microbiological Methods, 73, 92-99.
25. Rolfe, K. J., Parmar, S., Mururi, D., Wreghitt, T. G., Jalal, H., Zhang, H., et al. (2007). An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping. Journal of Clinical Virology, 39, 318-321.
26. Rutjes, S. A., van den Berg, H., Lodder, W. J., & Husman, A. M. D. (2006). Real-time detection of noroviruses in surface water by use of a broadly reactive nucleic acid sequence-based amplification assay. Applied and Environmental Microbiology, 72, 5349-5358.
27. Sobsey, M. D., & Glass, J. S. (1984). Influence of water quality on enteric virus concentration by microporous filter methods. Applied and Environmental Microbiology, 47, 956-960.
28. Wolf, S., Williamson, W. M., Hewitt, J., Rivera-Aban, M., Lin, S., Ball, A., et al. (2007). Sensitive multiplex real-time reverse transcription-PCR assay for the detection of human and animal noroviruses in clinical and environmental samples. Applied and Environmental Microbiology, 73, 5464-5470.
29. Yoder, J., Roberts, V., Craun, G. F., Hill, V., Hicks, L. A., Alexander, N. T., et al. (2008). Surveillance for waterborne disease and outbreaks associated with drinking water and water not intended for drinking-United States, 2005-2006. MMWR Surveillance Summaries, 57, 39-62.