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Volumn 72, Issue 8, 2006, Pages 5349-5358

Real-time detection of noroviruses in surface water by use of a broadly reactive nucleic acid sequence-based amplification assay

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CLONING; DNA SEQUENCES; POTABLE WATER; RISK ASSESSMENT; SEWAGE TREATMENT PLANTS; SURFACE WATERS;

EID: 33747363734     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.00751-06     Document Type: Article
Times cited : (62)

References (51)
  • 1
    • 0028935361 scopus 로고
    • Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and Southern hybridization
    • Ando, T., S. S. Monroe, J. R. Gentsch, Q. Jin, D. C. Lewis, and R. I. Glass. 1995. Detection and differentiation of antigenically distinct small round-structured viruses (Norwalk-like viruses) by reverse transcription-PCR and Southern hybridization. J. Clin. Microbiol. 33:64-71.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 64-71
    • Ando, T.1    Monroe, S.S.2    Gentsch, J.R.3    Jin, Q.4    Lewis, D.C.5    Glass, R.I.6
  • 2
    • 0034129940 scopus 로고    scopus 로고
    • Genetic classification of "Norwalk-like viruses."
    • Ando, T., J. S. Noel, and R. L. Fankhauser. 2000. Genetic classification of "Norwalk-like viruses." J. Infect. Dis. 181:S336-S348.
    • (2000) J. Infect. Dis. , vol.181
    • Ando, T.1    Noel, J.S.2    Fankhauser, R.L.3
  • 10
    • 0036642439 scopus 로고    scopus 로고
    • Epidemiologic and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States
    • Fankhauser, R. L., S. S. Monroe, J. S. Noel, C. D. Humphrey, J. B. Bresee, U. D. Parashar, T. Ando, and R. I. Glass. 2002. Epidemiologic and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States. J. Infect. Dis. 186:1-7.
    • (2002) J. Infect. Dis. , vol.186 , pp. 1-7
    • Fankhauser, R.L.1    Monroe, S.S.2    Noel, J.S.3    Humphrey, C.D.4    Bresee, J.B.5    Parashar, U.D.6    Ando, T.7    Glass, R.I.8
  • 11
    • 0030788959 scopus 로고    scopus 로고
    • Mixed genogroup SRSV infections among party of canoeists exposed to contaminated recreational water
    • Gray, J. J., J. Green, C. Cunliffe, C. Gallimore, J. V. Lee, K. Neal, and D. W. G. Brown. 1997. Mixed genogroup SRSV infections among party of canoeists exposed to contaminated recreational water. J. Med. Virol. 52:425-429.
    • (1997) J. Med. Virol. , vol.52 , pp. 425-429
    • Gray, J.J.1    Green, J.2    Cunliffe, C.3    Gallimore, C.4    Lee, J.V.5    Neal, K.6    Brown, D.W.G.7
  • 12
    • 0029591822 scopus 로고
    • Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis
    • Green, J., C. I. Gallimore, J. P. Norcott, D. Lewis, and D. W. G. Brown. 1995. Broadly reactive reverse transcriptase polymerase chain reaction for the diagnosis of SRSV-associated gastroenteritis. J. Med. Virol. 47:392-398.
    • (1995) J. Med. Virol. , vol.47 , pp. 392-398
    • Green, J.1    Gallimore, C.I.2    Norcott, J.P.3    Lewis, D.4    Brown, D.W.G.5
  • 13
    • 0031935485 scopus 로고    scopus 로고
    • A nested reverse transcriptase PCR assay for detection of small round-structured viruses in environmentally contaminated molluscan shellfish
    • Green, J., K. Henshilwood, C. I. Gallimore, D. W. G. Brown, and D. N. Lees. 1998. A nested reverse transcriptase PCR assay for detection of small round-structured viruses in environmentally contaminated molluscan shellfish. Appl. Environ. Microbiol. 64:858-863.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 858-863
    • Green, J.1    Henshilwood, K.2    Gallimore, C.I.3    Brown, D.W.G.4    Lees, D.N.5
  • 14
    • 0001248233 scopus 로고    scopus 로고
    • Human caliciviruses
    • D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.). Lippincott Williams & Wilkins, Philadelphia, Pa.
    • Green, K. Y., R. M. Chanok, and A. Z. Kapikian. 2001. Human caliciviruses, p. 841-874. In D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology. 4th ed. Lippincott Williams & Wilkins, Philadelphia, Pa.
    • (2001) Fields Virology. 4th Ed. , pp. 841-874
    • Green, K.Y.1    Chanok, R.M.2    Kapikian, A.Z.3
  • 15
    • 0030997830 scopus 로고    scopus 로고
    • Capsid sequence diversity in small round structured viruses from recent UK outbreaks of gastroenteritis
    • Green, S. M., P. R. Lambden, E. O. Caul, and I. N. Clarke. 1997. Capsid sequence diversity in small round structured viruses from recent UK outbreaks of gastroenteritis. J. Med. Virol. 52:14-19.
    • (1997) J. Med. Virol. , vol.52 , pp. 14-19
    • Green, S.M.1    Lambden, P.R.2    Caul, E.O.3    Clarke, I.N.4
  • 17
    • 0037358934 scopus 로고    scopus 로고
    • Evaluation of the NucliSens basic kit assay for detection of Norwalk virus RNA in stool specimens
    • Greene, S. R., C. L. Moe, L. C. M. Jaykus, L. Grosso, and P. van Aarle. 2003. Evaluation of the NucliSens basic kit assay for detection of Norwalk virus RNA in stool specimens. J. Virol. Methods 108:123-131.
    • (2003) J. Virol. Methods , vol.108 , pp. 123-131
    • Greene, S.R.1    Moe, C.L.2    Jaykus, L.C.M.3    Grosso, L.4    Van Aarle, P.5
  • 18
    • 0343049200 scopus 로고    scopus 로고
    • Outbreak of viral gastroenteritis due to sewage-contaminated drinking water
    • Hafliger, D., P. Hubner, and J. Luthy. 2000. Outbreak of viral gastroenteritis due to sewage-contaminated drinking water. Int. J. Food Microbiol. 54:123-126.
    • (2000) Int. J. Food Microbiol. , vol.54 , pp. 123-126
    • Hafliger, D.1    Hubner, P.2    Luthy, J.3
  • 19
    • 18444382958 scopus 로고    scopus 로고
    • Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torque teno viruses in the Tamagawa River in Japan
    • Haramoto, E., H. Katayama, K. Oguma, and S. Ohgaki. 2005. Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torque teno viruses in the Tamagawa River in Japan. Appl. Environ. Microbiol. 71:2403-2411.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 2403-2411
    • Haramoto, E.1    Katayama, H.2    Oguma, K.3    Ohgaki, S.4
  • 20
    • 14644441203 scopus 로고    scopus 로고
    • Detection of noroviruses in tap water in Japan by means of a new method for concentrating enteric viruses in large volumes of freshwater
    • Haramoto, E., H. Katayama, and S. Ohgaki. 2004. Detection of noroviruses in tap water in Japan by means of a new method for concentrating enteric viruses in large volumes of freshwater. Appl. Environ. Microbiol. 70:2154-2160.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 2154-2160
    • Haramoto, E.1    Katayama, H.2    Ohgaki, S.3
  • 21
    • 1442325313 scopus 로고    scopus 로고
    • Norovirus outbreak among primary school children who had played in a recreational water fountain
    • Hoebe, C. J. P. A., H. Vennema, A. M. de Roda Husman, and Y. T. H. P. van Duynhoven. 2004. Norovirus outbreak among primary school children who had played in a recreational water fountain. J. Infect. Dis. 189:699-705.
    • (2004) J. Infect. Dis. , vol.189 , pp. 699-705
    • Hoebe, C.J.P.A.1    Vennema, H.2    De Roda Husman, A.M.3    Van Duynhoven, Y.T.H.P.4
  • 22
    • 0346434154 scopus 로고    scopus 로고
    • Detection and characterization of norovirus outbreaks in Germany: Application of a one-tube RT-PCR using a fluorogenic real-time detection system
    • Höhne, M., and E. Schreier. 2004. Detection and characterization of norovirus outbreaks in Germany: application of a one-tube RT-PCR using a fluorogenic real-time detection system. J. Med. Virol. 72:312-319.
    • (2004) J. Med. Virol. , vol.72 , pp. 312-319
    • Höhne, M.1    Schreier, E.2
  • 23
    • 8744237222 scopus 로고    scopus 로고
    • Multiplex nucleic acid sequence-based amplification for simultaneous detection of several enteric viruses in model ready-to-eat foods
    • Jean, J., D. H. D'Souza, and L.-A. Jaykus. 2004. Multiplex nucleic acid sequence-based amplification for simultaneous detection of several enteric viruses in model ready-to-eat foods. Appl. Environ. Microbiol. 70:6603-6610.
    • (2004) Appl. Environ. Microbiol. , vol.70 , pp. 6603-6610
    • Jean, J.1    D'Souza, D.H.2    Jaykus, L.-A.3
  • 24
    • 17444430427 scopus 로고    scopus 로고
    • Rapid and sensitive detection of norovirus by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples
    • Jothikumar, N., J. A. Lowther, K. Henshilwood, D. N. Lees, V. R. Hill, and J. Vinje. 2005. Rapid and sensitive detection of norovirus by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples. Appl. Environ. Microbiol. 71:1870-1875.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1870-1875
    • Jothikumar, N.1    Lowther, J.A.2    Henshilwood, K.3    Lees, D.N.4    Hill, V.R.5    Vinje, J.6
  • 25
    • 0037388633 scopus 로고    scopus 로고
    • Broadly reactive and highly sensitive assay for Norwalk viruses based on real-time quantitative reverse transcription-PCR
    • Kageyama, T., S. Kojima, M. Shinohara, K. Uchida, S. Fukushi, F. B. Hoshino, N. Takeda, and K. Katayama. 2003. Broadly reactive and highly sensitive assay for Norwalk viruses based on real-time quantitative reverse transcription-PCR. J. Clin. Microbiol. 41:1548-1557.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1548-1557
    • Kageyama, T.1    Kojima, S.2    Shinohara, M.3    Uchida, K.4    Fukushi, S.5    Hoshino, F.B.6    Takeda, N.7    Katayama, K.8
  • 27
    • 1642575243 scopus 로고    scopus 로고
    • Molecular epidemiology of human caliciviruses
    • U. Desselberger and J. Gray (ed.). Elsevier Science B.V., Amsterdam, The Netherlands
    • Koopmans, M., E. van Strien, and H. Vennema. 2002. Molecular epidemiology of human caliciviruses, p. 509-539. In U. Desselberger and J. Gray (ed.), Viral gastroenteritis. Elsevier Science B.V., Amsterdam, The Netherlands.
    • (2002) Viral Gastroenteritis , pp. 509-539
    • Koopmans, M.1    Van Strien, E.2    Vennema, H.3
  • 28
    • 1842560537 scopus 로고    scopus 로고
    • High rate and changing molecular epidemiology pattern of norovirus infections in sporadic cases and outbreaks of gastroenteritis in Hong Kong
    • Lau, C. S., D. A. Wong, L. K. L. Tong, J. Y. C. Lo, A. M. C. Ma, P. K. C. Cheng, and W. W. L. Lim. 2004. High rate and changing molecular epidemiology pattern of norovirus infections in sporadic cases and outbreaks of gastroenteritis in Hong Kong. J. Med. Virol. 73:113-117.
    • (2004) J. Med. Virol. , vol.73 , pp. 113-117
    • Lau, C.S.1    Wong, D.A.2    Tong, L.K.L.3    Lo, J.Y.C.4    Ma, A.M.C.5    Cheng, P.K.C.6    Lim, W.W.L.7
  • 29
    • 14944381958 scopus 로고    scopus 로고
    • Molecular epidemiology of norovirus infections in Stockholm, Sweden, during the years 2000 to 2003: Association of the GGIIb genetic cluster with infection in children
    • Lindell, A. T., L. Grillner, L. Svensson, and B. Zweyberg Wirgart. 2005. Molecular epidemiology of norovirus infections in Stockholm, Sweden, during the years 2000 to 2003: association of the GGIIb genetic cluster with infection in children. J. Clin. Microbiol. 43:1086-1092.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 1086-1092
    • Lindell, A.T.1    Grillner, L.2    Svensson, L.3    Zweyberg Wirgart, B.4
  • 30
    • 15444367292 scopus 로고    scopus 로고
    • Presence of noroviruses and other enteric viruses in sewage and surface waters in the Netherlands
    • Lodder, W. J., and A. M. de Roda Husman. 2005. Presence of noroviruses and other enteric viruses in sewage and surface waters in The Netherlands. Appl. Environ. Microbiol. 71:1453-1461.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1453-1461
    • Lodder, W.J.1    De Roda Husman, A.M.2
  • 34
    • 26444499487 scopus 로고    scopus 로고
    • Norovirus genotypes causing gastroenteritis outbreaks in Finland 1998-2002
    • Maunula, L., and C. H. Von Bonsdorff. 2005. Norovirus genotypes causing gastroenteritis outbreaks in Finland 1998-2002. J. Clin. Virol. 34:186-194.
    • (2005) J. Clin. Virol. , vol.34 , pp. 186-194
    • Maunula, L.1    Von Bonsdorff, C.H.2
  • 36
    • 1442335412 scopus 로고    scopus 로고
    • Evaluation of a broadly reactive nucleic acid sequence based amplification assay for the detection of noroviruses in faecal material
    • Moore, C., E. M. Clark, C. I. Gallimore, S. A. Corden, J. J. Gray, and D. Westmoreland. 2004. Evaluation of a broadly reactive nucleic acid sequence based amplification assay for the detection of noroviruses in faecal material. J. Clin. Virol. 29:290-296.
    • (2004) J. Clin. Virol. , vol.29 , pp. 290-296
    • Moore, C.1    Clark, E.M.2    Gallimore, C.I.3    Corden, S.A.4    Gray, J.J.5    Westmoreland, D.6
  • 38
    • 19444372403 scopus 로고    scopus 로고
    • Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis
    • Pang, X. L., J. K. Preiksaitis, and B. Lee. 2005. Multiplex real time RT-PCR for the detection and quantitation of norovirus genogroups I and II in patients with acute gastroenteritis. J. Clin. Virol. 33:168-171.
    • (2005) J. Clin. Virol. , vol.33 , pp. 168-171
    • Pang, X.L.1    Preiksaitis, J.K.2    Lee, B.3
  • 39
    • 21744449962 scopus 로고    scopus 로고
    • Evidence of the etiological predominance of norovirus in gastroenteritis outbreaks-emerging new-variant and recombinant norovirus in Hungary
    • Reuter, G., K. Krisztalovics, H. Vennema, M. Koopmans, and G. Szucs. 2005. Evidence of the etiological predominance of norovirus in gastroenteritis outbreaks-emerging new-variant and recombinant norovirus in Hungary. J. Med. Virol. 76:598-607.
    • (2005) J. Med. Virol. , vol.76 , pp. 598-607
    • Reuter, G.1    Krisztalovics, K.2    Vennema, H.3    Koopmans, M.4    Szucs, G.5
  • 40
    • 22144473001 scopus 로고    scopus 로고
    • Isolation and detection of enterovirus RNA from large-volume water samples by using the NucliSens miniMAG system and real-time nucleic acid sequence-based amplification
    • Rutjes, S. A., R. Italiaander, H. H. J. L. van den Berg, W. J. Lodder, and A. M. de Roda Husman. 2005. Isolation and detection of enterovirus RNA from large-volume water samples by using the NucliSens miniMAG system and real-time nucleic acid sequence-based amplification. Appl. Environ. Microbiol. 71:3734-3740.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3734-3740
    • Rutjes, S.A.1    Italiaander, R.2    Van Den Berg, H.H.J.L.3    Lodder, W.J.4    De Roda Husman, A.M.5
  • 41
    • 0030001524 scopus 로고    scopus 로고
    • Dimethyl sulfoxide improves RNA amplification
    • Sidhu, M. K., M. J. Liao, and A. Rashidbaigi. 1996. Dimethyl sulfoxide improves RNA amplification. BioTechniques 21:44-47.
    • (1996) BioTechniques , vol.21 , pp. 44-47
    • Sidhu, M.K.1    Liao, M.J.2    Rashidbaigi, A.3
  • 42
    • 0028114261 scopus 로고
    • Fidelity of nucleic acid amplification with avian myeloblastosis virus reverse transcriptase and T7 RNA polymerase
    • Sooknanan, R., M. Howes, L. Read, and L. T. Malek. 1994. Fidelity of nucleic acid amplification with avian myeloblastosis virus reverse transcriptase and T7 RNA polymerase. BioTechniques 17:1077-1085.
    • (1994) BioTechniques , vol.17 , pp. 1077-1085
    • Sooknanan, R.1    Howes, M.2    Read, L.3    Malek, L.T.4
  • 43
    • 0027202733 scopus 로고
    • Interference of humic acids and DNA extracted directly from soil in detection and transformation from bacteria and yeast
    • Tebbe, C. C., and W. Vahjen. 1993. Interference of humic acids and DNA extracted directly from soil in detection and transformation from bacteria and yeast. Appl. Environ. Microbiol. 59:2657-2665.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2657-2665
    • Tebbe, C.C.1    Vahjen, W.2
  • 45
    • 0036701645 scopus 로고    scopus 로고
    • Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction
    • Vennema, H., E. de Bruin, and M. Koopmans. 2002. Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J. Clin. Virol. 25:233-235.
    • (2002) J. Clin. Virol. , vol.25 , pp. 233-235
    • Vennema, H.1    De Bruin, E.2    Koopmans, M.3
  • 46
    • 0030785492 scopus 로고    scopus 로고
    • The incidence and genetic variability of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands
    • Vinjé, J., S. A. Altena, and M. P. G. Koopmans. 1997. The incidence and genetic variability of small round-structured viruses in outbreaks of gastroenteritis in the Netherlands. J. Infect. Dis. 176:1374-1378.
    • (1997) J. Infect. Dis. , vol.176 , pp. 1374-1378
    • Vinjé, J.1    Altena, S.A.2    Koopmans, M.P.G.3
  • 47
    • 0033915525 scopus 로고    scopus 로고
    • Simultaneous detection and genotyping of "Norwalk-like viruses" by oligonucleotide array in a reverse line blot hybridization format
    • Vinjé, J., and M. P. G. Koopmans. 2000. Simultaneous detection and genotyping of "Norwalk-like viruses" by oligonucleotide array in a reverse line blot hybridization format. J. Clin. Microbiol. 38:2595-2601.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 2595-2601
    • Vinjé, J.1    Koopmans, M.P.G.2
  • 49
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson, I. G. 1997. Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microhiol. 63:3741-3751.
    • (1997) Appl. Environ. Microhiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1
  • 51
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31:3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


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