A rapid and efficient method for quantitation of genogroups I and II norovirus from oysters and application in other complex environmental samples

Journal of Virological Methods

Volumn 156, Issue 1-2, 2009, Pages 59-65

  Gentry, Jennifer ^a   Vinjé, Jan ^b   Lipp, Erin K ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b NATIONAL CENTER FOR IMMUNIZATION AND RESPIRATORY DISEASES   (United States)

Author keywords

Norovirus; Plankton; RT PCR; Shellfish

Indexed keywords

SILICON DIOXIDE;

ARTICLE; CONTROLLED STUDY; GENOTYPE; NONHUMAN; NOROVIRUS; NUCLEOTIDE SEQUENCE; OYSTER; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; RNA TRANSCRIPTION; SHELLFISH POISONING;

ANIMALS; ENVIRONMENTAL MONITORING; FECES; FOOD CONTAMINATION; FOOD MICROBIOLOGY; GENOTYPE; HUMANS; NOROVIRUS; OSTREIDAE; PLANKTON; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY;

BIVALVIA; NOROVIRUS; OSTREIDAE;

EID: 59749084477     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.11.001     Document Type: Article

References (37)

1. Arnal C., Ferre-Aubineau V., Besse B., Mignotte B., Schwartzbrod L., and Billaudel S. Comparison of seven RNA extraction methods on stool and shellfish samples prior to hepatitis A virus amplification. J. Virol. Methods 77 (1999) 17-26
2. Atmar R.L., Metcalf T.G., Neill F.H., and Estes M.K. Detection of enteric viruses in oysters by using the polymerase chain reaction. Appl. Environ. Microbiol. 59 (1993) 631-635
3. Atmar R.L., Neill F.H., Romalde J.L., LeGuyader F., Woodley C.M., Metcalf T.G., and Estes M.K. Detection of Norwalk virus and hepatitis A virus in shellfish tissues with the PCR. Appl. Environ. Microbiol. 61 (1995) 3014-3018
4. Berg D.E., Kohn M.A., Farley T.A., and McFarland L.M. Multi-state outbreaks of acute gastroenteritis traced to fecal-contaminated oysters harvested in Louisiana. J. Infect. Dis. 181 (2000) 381-386
5. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-van Dillen P.M., and van der Noordaa J. Rapid and simple method for purification of nucleic acids. J. Clin. Microbiol. 28 (1990) 495-503
6. de Roda Husman A.M., Lodder-Verschoor F., Van den Berg H.H.J.L., Guyader F.S.L., Pelt H.V., Poel W.H.M.V.d., and Rutjes S.A. Rapid virus detection procedure for molecular tracing of shellfish associated with disease outbreaks. J. Food Prot. 70 (2007) 967-974
7. Dix A.B., and Jaykus L.A. Virion concentration method for the detection of human enteric viruses in extracts of hard-shelled clams. J. Food Prot. 61 (1998) 458-465
8. Dowell S.F., Groves C., Kirkland K.B., Cicirello H.G., Ando T., Jin Q., Gentsch J.R., Monroe S.S., Humphrey C.D., Slemp C., Dwyer D.M., Meriwether R.A., and Glass R.I. A multistate outbreak of oyster-associated gastroenteritis: implications for interstate tracing of contaminated shellfish. J. Infect. Dis. 171 (1995) 1497-1503
9. Doyle A., Barataud D., Gallay A., Thiolet J.M., Le Guyader S., Kohli E., and Vaillant V. Norovirus foodborne outbreaks associated with the consumption of oysters from the Etang de Thau, France, December 2002. Euro. Surveill. 9 (2004) 24-26
10. Fankhauser R.L., Monroe S.S., Noel J.S., Humphrey C.D., Bresee J.S., Parashar U.D., Ando T., and Glass R.I. Epidemiologic and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States. J. Infect. Dis. 186 (2002) 1-7
11. Gentry, J.B., J. Vinje, E.K. Lipp, 2008, Unpublished.
12. Gouvea V., Santos N., Timenetsky M.d.C., and Estes M.K. Identification of Norwalk virus in artificially seeded shellfish and selected foods. J. Virol. Methods 48 (1994) 177-187
13. Griffin D.W., Donaldson K.A., Paul J.H., and Rose J.B. Pathogenic human viruses in coastal waters. Clin. Microbiol. Rev. 16 (2003) 129-143
14. Guillard R.R., and Ryther J.H. Studies of marine planktonic diatoms. Can. J. Microbiol. 8 (1962) 229-239
15. Hafliger D., Gilgen M., Luthy J., and Hubner P. Semi-nested RT-PCR systems for small round structured viruses and detection of enteric viruses in seafood. Int. J. Food Microbiol. 37 (1997) 27-36
16. Henshilwood K., Dore W.J., Anderson S., and Lees D.N. Investigation of Norwalk like virus elimination during depuration using a real time quantitative PCR. In: Villalba J.L.R.A., Reura B., and Beiras R. (Eds). Molluscan Shellfish Safety (2003), Conselleria de Pesca e Asuntos Maritimos da Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO, Galicia, Spain
17. Herndon, M., 2006. FDA Investigating Norovirus Outbreak Linked to Oysters. U.S. Food and Drug Administration. http://www.fda.gov/bbs/topics/NEWS/2006/NEW01522.html.
18. Jaykus L.A., DeLeon R., and Sobsey M.D. A virion concentration method for detection of human enteric viruses in oysters by PCR and oligoprobe hybridization. Appl. Environ. Microbiol. 62 (1996) 2074-2080
19. Jothikumar N., Lowther J.A., Henshilwood K., Lees D.N., Hill V.R., and Vinje J. Rapid and sensitive detection of norovirus by using TaqMan-based one-step reverse-transcription-PCR assays and application to naturally contaminated shellfish samples. Appl. Environ. Microbiol. 71 (2005) 1870-1875
20. Kageyama T., Kojima S., Shinohara M., Uchida K., Fukushi S., Hoshino F.B., Takeda N., and Katayama K. Broadly reactive and highly sensitive assay for norwalk-like viruses based on real-time quantitative reverse transcription-PCR. J. Clin. Microbiol. 41 (2003) 1548-1557
21. Kingsley D.H., and Richards G.P. Rapid and Efficient Extraction Method for Reverse Transcription-PCR Detection of Hepatitis A and Norwalk-Like Viruses in Shellfish. Appl. Environ. Microbiol. 67 (2001) 4152-4157
22. Kohn M.A., Furley T.A., Ando T., Curtis M., Wilson S.A., Jin Q., Monroe S.S., Baron R.C., MacFarland L.M., and Glass R.I. An outbreak of Norwalk virus gastroenteritis associated with eating raw oysters. Implications for maintaining safe oyster beds. J. Am. Med. Assoc. 273 (1995) 466-471
23. Le Guyader F., Neill F.H., Estes M.K., Monroe S.S., Ando T., and Atmar R.L. Detection and analysis of a small round-structured virus strain in oysters implicated in an outbreak of acute gastroenteritis. Appl. Environ. Microbiol. 62 (1996) 4268-4272
24. Lees D.N., Henshilwood K., and Dore W.J. Development of a method for detection of enteroviruses in shellfish by PCR with poliovirus as a model. Appl. Environ. Microbiol. 61 (1994) 2999-3005
25. Lindesmith L., Moe C., Marionneau S., Ruvoen N., Jiang X., Lindblad L., Stewart P., Lependu J., and Baric R. Human susceptibility and resistance to Norwalk virus infection. Nat. Med. 9 (2003) 548-553
26. Loisy F., Atmar R.L., Guillon P., Cann P.L., Pommepuy M., and Guyader F.S.L. Real-time RT-PCR for norovirus screening in shellfish. J. Virol. Methods 123 (2005) 1-7
27. Lopez-Sabater E.I., Deng M.Y., and Cliver D.O. Magnetic Immunoseparation PCR assay (MIPA) for detection of hepatitis A virus (HAV) in American oyster (Crassostrea viriginica). Lett. Appl. Microbiol. 24 (1997) 101-104
28. Mead P.S., Slutsker L., Dietz V., McCaig L.F., Bresee J.S., Shapiro C., Griffin P.M., and Tauxe R.V. Food-related illness and death in the United States. Emerg. Infect. Dis. 5 (1999) 607-625
29. Mullendore J.L., Sobsey M.D., and Shieh Y.-S.C. Improved method for the recovery of hepatitis A virus from oysters. J. Virol. Methods 123 (2001) 1-7
30. Potasman I., Paz A., and Odeh M. Infectious outbreaks associated with bivalve shellfish consumption: a worldwide perspective. Clin. Infect. Dis. 35 (2002) 921-928
31. Prato R., Lopalco P.L., Chironna M., Barbutti G., Germinario C., and Quarto M. Norovirus gastroenteritis general outbreak associated with raw shellfish consumption in south Italy. BMC Infect. Dis. 4 (2004) 37
32. Richards G.P., Goldmintz D., Green D.L., and Babinchak J.A. Rapid methods for extraction and concentration of poliovirus from oyster tissues. J. Virol. Methods 5 (1982) 285-291
33. Sanchez G., Pinto M., Vanaclocha H., and Bosch A. Molecular characterization of hepatitis A virus isolates from a transcontinental shellfish-borne outbreak. J. Clin. Microbiol. 40 (2002) 4148-4155
34. Schwab K.J., Neill F.H., Guyader F.F.L., Estes M.K., and Atmar R.L. Development of a reverse transcription-PCR-DNA enzyme immunoassay for detection of Norwalk-like viruses and hepatitis A virus in stool and shellfish. Appl. Environ. Microbiol. 67 (2001) 742-749
35. Shieh Y.C., Calci K.R., and Baric R.S. A method to detect low levels of enteric viruses in contaminated oysters. Appl. Environ. Microbiol. 65 (1999) 4709-4714
36. Sobsey M.D., Wallis C., and Melnick J.L. Development of a simple method for concentrating enteroviruses from oysters. Appl. Microbiol. 29 (1975) 21-26
37. Vinje, J., 2008. Unpublished.