Genetic manipulation tools for Dietzia spp.

Journal of Applied Microbiology

Volumn 109, Issue 5, 2010, Pages 1845-1852

  Szvetnik, A ^a   Bihari, Z ^a   Szabo Z ^a   Kelemen, O ^a   Kiss, I ^a  

^a BAY ZOLTÁN NONPROFIT LTD FOR APPLIED RESEARCH   (Hungary)

Author keywords

Dietzia; Electroporation; PNV18; PNV18Sm; Transformation

Indexed keywords

BIOTECHNOLOGY;

DIETZIA; E. COLI; ELECTROPORATION; GENETIC MANIPULATIONS; MANIPULATION TOOLS; NOCARDIA; SHUTTLE VECTOR; TRANSFORMATION; TRANSFORMATION METHODS; VECTOR SYSTEMS;

ESCHERICHIA COLI;

BACTERIAL DNA; BACTERIAL VECTOR;

FUNGUS; GENETIC ANALYSIS; GENETIC ENGINEERING;

ACTINOMYCETALES; ARTICLE; BACTERIAL STRAIN; DIETZIA; DIETZIA CINNAMEA; DIETZIA MARIS; DIETZIA NATRONOLIMNAEA; DIETZIA PSYCHRALCALIPHILA; ELECTROPORATION; ELECTROTRANSFORMATION; ESCHERICHIA COLI; GENETIC MANIPULATION; NOCARDIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; SHUTTLE VECTOR;

DIETZIA; DIETZIA CINNAMEA; DIETZIA MARIS; DIETZIA NATRONOLIMNAEA; NOCARDIA;

EID: 78650494546     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2010.04818.x     Document Type: Article

References (42)

1. Al-Awadhi, H., Sulaiman, R.H., Mahmoud, H.M. and Radwan, S.S. (2007) Alkaliphilic and halophilic hydrocarbon-utilizing bacteria from Kuwaiti coasts of the Arabian Gulf. Appl Microbiol Biotechnol 77, 183-186.
2. Aune, T.E. and Aachmann, F.L. (2009) Methodologies to increase the transformation efficiencies and the range of bacteria that can be transformed. Appl Microbiol Biotechnol. doi: .
3. Azanza, M.P., Azanza, R.V., Vargas, V.M. and Hedreyda, C.T. (2006) Bacterial endosymbionts of Pyrodinium bahamense var. compressum. Microb Ecol 52, 756-764.
4. Bemer-Melchior, P., Haloun, A., Riegel, P. and Drugeon, H.B. (1999) Bacteremia due to Dietzia maris in an immunocompromised patient. Clin Infect Dis. 5, 1338-1340.
5. Bødtker, G., Hvidsten, I.V., Barth, T. and Torsvik, T. (2009) Hydrocarbon degradation by Dietzia sp. A14101 isolated from an oil reservoir model column. Antonie Van Leeuwenhoek 96, 459-469.
6. Borsodi, A.K., Micsinai, A., Rusznyák, A., Vladár, P., Kovács, G., Tóth, E.M. and Márialigeti, K. (2005) Diversity of alkaliphilic and alkalitolerant bacteria cultivated from decomposing reed rhizomes in a Hungarian soda lake. Microb Ecol 50, 9-18.
7. Brito, E.M., Guyoneaud, R., Goñi-Urriza, M., Ranchou-Peyruse, A., Verbaere, A., Crapez, M.A., Wasserman, J.C. and Duran, R. (2006) Characterization of hydrocarbon-oclastic bacterial communities from mangrove sediments in Guanabara Bay, Brazil. Res Microbiol 157, 752-762.
8. Chaillan, F., Le Flèche, A., Bury, E., Phantavong, Y.H., Grimont, P., Saliot, A. and Oudot, J. (2004) Identification and biodegradation potential of tropical aerobic hydrocarbon-degrading microorganisms. Res Microbiol 155, 587-595.
9. Chiba, K., Hoshino, Y., Ishino, K., Kogure, T., Mikami, Y., Uehara, Y. and Ishikawa, J. (2007) Construction of a pair of practical Nocardia-Escherichia coli shuttle vectors. Jpn J Infect Dis 60, 45-47.
10. Colquhoun, J.A., Mexson, J., Goodfellow, M., Ward, A.C., Horikoshi, K. and Bull, A.T. (1998) Novel rhodococci and other mycolate actinomycetes from the deep sea. Antonie Van Leeuwenhoek 74, 27-40.
11. Dekio, I., Sakamoto, M., Hayashi, H., Amagai, M., Suematsu, M. and Benno, Y. (2007) Characterization of skin microbiota in patients with atopic dermatitis and in normal subjects using 16S rRNA gene-based comprehensive analysis. J Med Microbiol 56, 1675-1683.
12. Dennis, J.J. and Zylstra, G.J. (1998) Plasposons: modular self-cloning minitransposon derivatives for rapid genetic analysis of gram-negative bacterial genomes. Appl Environ Microbiol 64, 2710-2715.
13. Duckworth, A.W., Grant, S., Grant, W.D., Jones, B.E. and Meijer, D. (1998) Dietzia natronolimnaios sp. nov., a new member of the genus Dietzia isolated from an east African soda lake. Extremophiles 2, 359-366.
14. Dunny, G.M., Lee, L.N. and LeBlanc, D.J. (1991) Improved electroporation and cloning vector system for gram-positive bacteria. Appl Environ Microbiol 57, 1194-1201.
15. Hammes, W., Schleifer, K.H. and Kandler, O. (1973) Mode of action of glycine on the biosynthesis of peptidoglycan. J Bacteriol 116, 1029-1053.
16. Holo, H. and Nes, I.F. (1989) High-frequency transformation, by electroporation, of Lactococcus lactis subsp. cremoris grown with glycine in osmotically stabilized media. Appl Environ Microbiol 55, 3119-3123.
17. Ishikawa, J., Chiba, K., Kurita, H. and Satoh, H. (2006) Contribution of rpoB2 RNA polymerase beta subunit gene to rifampin resistance in Nocardia species. Antimicrob Agents Chemother 50, 1342-1346.
18. Iwaki, H., Nakai, E., Nakamura, S. and Hasegawa, Y. (2008) Isolation and characterization of new cyclohexylacetic acid-degrading bacteria. Curr Microbiol 57, 107-110.
19. Jones, A.L., Koerner, R.J., Natarajan, S., Perry, J.D. and Goodfellow, M. (2008) Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis. Int J Syst Evol Microbiol 58, 68-72.
20. Khodaiyan, F., Razavi, S.H., Emam-Djomeh, Z., Mousavi, S.M. and Hejazi, M.A. (2007) Effect of culture conditions on canthaxanthin production by Dietzia natronolimnaea HS-1. J Microbiol Biotechnol 17, 195-201.
21. Kleinsteuber, S., Riis, V., Fetzer, I., Harms, H. and Müller, S. (2006) Population dynamics within a microbial consortium during growth on diesel fuel in saline environments. Appl Environ Microbiol 72, 3531-3542.
22. Knoppová, M., Phensaijai, M., Vesely, M., Zemanova, M., Nesvera, J. and Pátek, M. (2007) Plasmid vectors for testing in vivo promoter activities in Corynebacterium glutamicum and Rhodococcus erythropolis. Curr Microbiol 55, 234-239.
23. Koerner, R.J., Goodfellow, M. and Jones, A.L. (2009) The genus Dietzia: a new home for some known and emerging opportunist pathogens. FEMS Immunol Med Microbiol 55, 296-305.
24. Li, J., Chen, C., Zhao, G.Z., Klenk, H.P., Pukall, R., Zhang, Y.Q., Tang, S.K. and Li, W.J. (2009) Description of Dietzia lutea sp. nov., isolated from a desert soil in Egypt. Syst Appl Microbiol 32, 118-123.
25. Maeda, M., Roberts, M.S., Ohta, Y., Fuji, F., Travisano, M. and Kudo, T. (1998) Isolation and characterization of a new aromatic compound-degrading alkalitrophic bacteria. J Gen Appl Microbiol 44, 101-106.
26. Maldonado, L.A., Fragoso-Yáñez, D., Pérez-García, A., Rosellón-Druker, J. and Quintana, E.T. (2009) Actinobacterial diversity from marine sediments collected in Mexico. Antonie Van Leeuwenhoek 95, 111-120.
27. Mayilraj, S., Suresh, K., Kroppenstedt, R.M. and Saini, H.S. (2006) Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. Int J Syst Evol Microbiol 56, 1667-1671.
28. Nazina, T.N., Sokolova, D.S., Grigoryan, A.A., Xue, Y.-F., Belyaev, S.S. and Ivanov, M.V. (2003) Production of oil-releasing compounds by microorganisms from the Daqing oil field, China. Microbiology 72, 173-178.
29. Pátek, M., Eikmanns, B.J., Pátek, J. and Sahm, H. (1996) Promoters from Corynebacterium glutamicum: Cloning, molecular analysis and search for a consensus motif. Microbiology 142, 1297-1309.
30. Pidoux, O., Argenson, J.N., Jacomo, V. and Drancourt, M. (2001) Molecular identification of a Dietzia maris hip prosthesis infection isolate. J Clin Microbiol. 39, 2634-2636.
31. Pleshakova, E.V., Dubrovskaya, E.V. and Turkovskaya, O.V. (2008) Efficiencies of introduction of an oil-oxidizing Dietzia maris strain and stimulation of natural microbial communities in remediation of polluted soil. Appl Biochem Microbiol 45, 389-395.
32. Rashidi, H., Akhtar, M.T., Van Der Kooy, F., Verpoorte, R. and Duetz, W.A. (2009) Hydroxylation and further oxidation of delta9-tetrahydrocannabinol by alkane-degrading bacteria. Appl Environ Microbiol 75, 7135-7141.
33. Reyes, G., Navarro, J.L., Gamallo, C. and Delas Cuevas, M.C. (2006) Type A aortic dissection associated with Dietzia maris. Interact Cardiovasc Thorac Surg 5, 666-668.
34. Saunders, J.R. and Saunders, V.A. (1999) Introduction of DNA into Bacteria. In Methods in Microbiology 29 ed. Smith, M.C.M. and Sockett, E. pp. 3-51. New York: Academic Press.
35. Sekizaki, T., Tanoue, T., Osaki, M., Shimoji, Y., Tsubaki, S. and Takai, S. (1998) Improved electroporation of Rhodococcus equi. J Vet Med Sci 60, 277-279.
36. Sette, L.D., Simioni, K.C., Vasconcellos, S.P., Dussan, L.J., Neto, E.V. and Oliveira, V.M. (2007) Analysis of the composition of bacterial communities in oil reservoirs from a southern offshore Brazilian basin. Antonie Van Leeuwenhoek 91, 253-266.
37. Takami, H., Inoue, A., Fuji, F. and Horikoshi, K. (1997) Microbial flora in the deepest sea mud of the Mariana Trench. FEMS Microbiol Lett 152, 279-285.
38. Tao, L., Yao, H. and Cheng, Q. (2007) Genes from a Dietzia sp. for synthesis of C40 and C50 beta-cyclic carotenoids. Gene 386, 90-97.
39. Tóth, E.M., Hell, E., Kovács, G., Borsodi, A.K. and Márialigeti, K. (2006) Bacteria isolated from the different developmental stages and larval organs of the obligate parasitic fly, Wohlfahrtia magnifica (Diptera: Sarcophagidae). Microb Ecol 51, 13-21.
40. Von Der Weid, I., Marques, J.M., Cunha, C.D., Lippi, R.K., Dos Santos, S.C., Rosado, A.S., Lins, U. and Seldin, L. (2007) Identification and biodegradation potential of a novel strain of Dietzia cinnamea isolated from a petroleum-contaminated tropical soil. Syst Appl Microbiol 30, 331-339.
41. Yassin, A.F., Hupfer, H. and Schaal, K.P. (2006) Dietzia cinnamea sp. nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant. Int J Syst Evol Microbiol 56, 641-645.
42. Yumoto, I., Nakamura, A., Iwata, H., Kojima, K., Kusumoto, K., Nodasaka, Y. and Matsuyama, H. (2002) Dietzia psychralcaliphila sp. nov., a novel, facultatively psychrophilic alkaliphile that grows on hydrocarbons. Int J Syst Evol Microbiol 52, 85-90.