Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 1, 2008, Pages 68-72

  Jones, Amanda L ^a,b   Koerner, Roland J ^c   Natarajan, Sivakumar ^c   Perry, John D ^b   Goodfellow, Michael ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b FREEMAN HOSPITAL   (United Kingdom)

^c SUNDERLAND ROYAL HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACITRACIN; CEFALEXIN; CIPROFLOXACIN; CLINDAMYCIN; COLISTIN; COTRIMOXAZOLE; ERYTHROMYCIN; FUSIDIC ACID; NALIDIXIC ACID; NOVOBIOCIN; PENICILLIN G; RIBOSOME RNA; RNA 16S; TETRACYCLINE; BACTERIAL DNA;

ACTINOBACTERIA; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONFLUENT AND RETICULATED PAPILLOMATOSIS; CONTROLLED STUDY; DIETZIA CINNAMEA; DIETZIA PAPILLOMATOSIS; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; HUMAN; IMMUNOCOMPROMISED PATIENT; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SKIN; STRAIN DIFFERENCE; ACTINOMYCETALES; BACTERIAL INFECTION; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; IMMUNOCOMPETENCE; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PAPILLOMA; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

DIETZIA; DIETZIA CINNAMEA;

ACTINOMYCETALES; ACTINOMYCETALES INFECTIONS; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; GENES, RRNA; GENOTYPE; HUMANS; IMMUNOCOMPETENCE; MOLECULAR SEQUENCE DATA; PAPILLOMA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SKIN; SPECIES SPECIFICITY;

EID: 40449089872     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65178-0     Document Type: Article

References (44)

1. Bemer-Melchior, P., Haloun, A., Riezel, P. & Drugeon, H. (1999). Bacteremia due to Dietzia maris in an immunocompromised patient. Clin Infect Dis 29, 1338-1340.
2. Butler, W. R., Floyd, M. M., Brown, J., Toney, S. R., Daneshvar, M. L, Cooksey, R. C., Carr, J., Steigerwalt, A. G. & Charles, N. (2005). Novel mycolic acid-containing bacteria in the family Segniliparaceae gen. nov., including the genus Segniliparus gen. nov., with descriptions of Segniliparus rotundus sp. nov., and Segniliparus rugosus sp. nov. Int J Syst Evol Microbiol 55, 1615-1624.
3. Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265-309. Edited by M. Goodfellow & A. G. O'Donnell. Chichester, UK: John Wiley.
4. Colquhoun, J. A., Mexson, J., Goodfellow, M., Ward, A. C, Horikoshi, K. & Bull, A. T. (1998). Novel rhodococci and other mycolate actinomycetes from the deep sea. Antonie van Leeuwenhoek 74, 27-40.
5. Duckworth, A. W., Grant, S., Grant, W. D., Jones, B. E. & Meijer, D. (1998). Dietzia natronolimnaea sp. nov., a new member of the genus Dietzia isolated from an East African soda lake. Extremophiles 2, 359-366.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Felsenstein, J. (1993). PHYLIP (phylogeny inference package) version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
9. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
10. Goodfellow, M. (1971). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33-80.
11. Goodfellow, M. & Maldonado, L. A. (2006). The families Dietziaceae, Gordoniaceae, Nocardiaceae and Tsukamurellaceae. In The Prokaryotes, 3rd edn., Vol. 3, Archaea, Bacteria, Firmicutes, Actinomycetes, pp. 843-888. Edited by Dworkin, M,, Falkow, S., Rosenberg, E., Schleifer, K. H. & Stackebrandt, E. New York: Springer.
12. Gordon, R. E. (1967). The taxonomy of soil bacteria. In The Ecology of Soil Bacteria, pp. 293-321. Edited by T. R. G. Gray & D. Parkinson. Liverpool: Liverpool University Press.
13. Gordon, R. E. & Mihm, J. M. (1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628-636.
14. Gordon, R. E., Barnett D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
15. Hamid, M. E., Minnikin, D. E., Goodfellow, M. & Ridell, M. (1993). Thin-layer chromatographic analysis of glycolipids and mycolic acids from Mycobacterium farcinogenes, Mycobacterium senegalense and related taxa. Zentralbl Bakteriol 279, 354-367.
16. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 329, 1319-1322.
17. Isik, K., Chun, J., Hah, Y. C. & Goodfellow, M. (1999). Nocardia salmonicida nom. rev., a fish pathogen. Int J Syst Bacteriol 49, 833-837.
18. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogeneous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
19. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
20. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. (1998). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48, 59-68.
21. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
22. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
23. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
24. Mayilraj, S., Suresh, S., Kroppenstedt R. M. & Saini, H. S. (2006). Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas. Int J Syst Evol Microbiol 56, 1667-1671.
25. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
26. Natarajan, S., Milne, D., Jones, A. L., Goodfellow, M., Perry, J. & Koerner, R. J. (2005). The etiological agent of confluent and reticulated papillomatosis? Br J Dermatol 153, 825-827.
27. Nesterenko, O. A., Nogina, T. M., Kasumova, S. A., Kvasnikov, E. I. & Batrakov, S. G. (1982). Rhodococcus luteus nom. nov. and Rhodococcus maris nom. nov. Int J Syst Bacteriol 32, 1-14.
28. Pidoux, O., Argenson, J.-N., Jacomo, V. & Drancourt, M. (2001). Molecular identification of a Dietzia maris hip prosthesis infection isolate. J Clin Microbiol 39, 2634-2636.
29. Rainey, F. A., Klatte, S., Kroppenstedt, R. M. & Stackebrandt E. (1995). Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris. Int J Syst Bacteriol 45, 32-36.
30. Rustigan, R. & Stuart C. A. (1941). Decomposition of urea by Proteus. Proc Soc Exp Biol Med 47; 108-112.
31. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
32. Society for American Bacteriologists (1957). Manual for Microbiological Methods. New York: McGraw-Hill.
33. Soddell, J. A., Stainsby, F. M., Eales, K. L., Kroppenstedt, R. M., Seviour, R. J. & Goodfellow, M. (2006). Millisia brevis gen. nov., sp. nov., an actinomycete isolated from activated sludge foam. Int J Syst Evol Microbiol 56, 739-744.
34. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1 997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int I Syst Bacteriol 47, 479-491.
35. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to the identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
36. Stevenson, I. L (1967). Utilization of aromatic hydrocarbons by Arthrobacter spp. Can J Microbiol 13, 205-211.
37. Sutcliffe, I. C. (2000). Characterisation of a lipomannan lipoglycan from the mycolic acid containing actinomycete Dietzia maris. Antonie van Leeuwenhoek 78, 195-201.
38. Takami, H., Inoue, A., Fuji, F. & Horikoshi, K. (1997). Microbial flora in the deepest sea mud of the Mariana Trench. FEMS Microbiol Lett 152, 279-285.
39. Tsukamura, M. (1966). Adansonian classification of mycobacteria. J Gen Microbiol 45, 253-273.
40. Uchida, K, Kudo, T., Suzuki, K & Nakase, T. (1999). A new rapid method of glycolate test by diethyl ether extraction, which is applicable to a small amount of bacterial cells of less than one milligram. J Gen Appl Microbiol 45, 49-56.
41. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
42. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
43. Yassin, A. F., Hupfer, H. & Schaal, K. P. (2006). Dietzia cinnamea sp. nov., a novel species of the genus Dietzia isolated from a perianal swab of a patient with a bone marrow transplant. Int J Syst Evol Microbiol 56, 641-645.
44. Yumoto, I., Nakamura, A., lwata, H., Kojima, K, Kusumoto, K., Nodosaka, Y. & Matsuyama, H. (2002). Dietzia psychralcaliphila sp. nov., a novel facultatively psychrophilic alkaliphile that grows on hydrocarbons. Int J Syst Evol Microbiol 52, 85-90.