Genetic diversity of avian infectious bronchitis virus isolated from domestic chicken flocks and coronaviruses from feral pigeons in Brazil between 2003 and 2009

Avian Diseases

Volumn 54, Issue 4, 2010, Pages 1191-1196

  Felippe, P A N ^a   Da Silva, L H A ^a   Santos, M M A B ^a   Spilki, F R ^b   Arns, C W ^a  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b UNIVERSIDADE FEEVALE   (Brazil)

Author keywords

chicken; coronavirus; genetic diversity; nested PCR; phylogeny; pigeon

Indexed keywords

AVES; AVIAN INFECTIOUS BRONCHITIS VIRUS; COLUMBA; COLUMBA LIVIA; CORONAVIRUS; GALLUS GALLUS;

EID: 78650469686     PISSN: 00052086     EISSN: None     Source Type: Journal    
DOI: 10.1637/9371-041510-Reg.1     Document Type: Article

References (46)

1. Abreu, J. T., J. S. Resende, R. B. Flatschart, A. V. Folgueras- Flatschart, A. C. Mendes, N. R. Martins, C. B. Silva, B. M. Ferreira, and M. Resende. Molecular analysis of Brazilian infectious bronchitis field isolates by reverse transcription-polymerase chain reaction, restriction fragment length polymorphism, and partial sequencing of the N gene. Avian Dis. 50:494-501. 2006.
2. Bochkov, Y. A., G. Tosi, P. Massi, and V. V. Drygin. Phylogenetic analysis of partial S1 and N gene sequences of infectious bronchitis virus isolates from Italy revealed genetic diversity and recombination. Virus Genes 35:65-71. 2007.
3. Boursnell, M. E., T. D. Brown, I. J. Foulds, P. F. Green, F. M. Tomley, and M. M. Binns. Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus. J. Gen. Virol. 68:57-77. 1987.
4. Brian, D. A., and R. S. Baric. Coronavirus genome structure and replication. Curr. Top. Microbiol. Immunol. 287:1-30. 2005.
5. Capua, I., Z. Minta, E. Karpinska, K. Mawditt, P. Britton, D. Cavanagh, and R. E. Gough. Co-circulation of four types of infectious bronchitis virus (793/B, 624/I, B1648 and Massachusetts). Avian Pathol. 28:587-592. 1999.
6. Cavanagh, D. Coronavirus avian infectious bronchitis virus. Vet. Res. 38:281-297. 2007.
7. Cavanagh, D. Coronaviruses in poultry and other birds. Avian Pathol. 34:439-448. 2005.
8. Cavanagh, D., and P. J. Davis. Coronavirus IBV: removal of spike glycopolypeptide S1 by urea abolishes infectivity and hemagglutination but not attachment to cells. J. Gen. Virol. 67:1443-1448. 1986.
9. Cavanagh, D., M. M. Elus, and J. K. Cook. Relationship between sequence variation in the S1 spike protein of infectious bronchitis virus and the extent of cross-protection in vivo. Avian Pathol. 26:63-74. 1997.
10. Di Fabio, J., L. I. Rossini, S. J. Orbell, G. Paul, M. B. Huggins, A. Malo, B. G. Silva, and J. K. Cook. Characterization of infectious bronchitis viruses isolated from outbreak of disease in commercial flocks in Brazil. Avian Dis. 44:582-589. 2000.
11. Dolz, R., J. Pujols, G. Ordóñez, R. Porta, and N. Majó. Molecular epidemiology of avian infectious bronchitis virus in Spain over fourteen-year period. Virology 374:50-59. 2008.
12. Domingo, E., and J. J. Holland. RNA virus mutations and fitness for survival. Ann. Rev. Microbiol. 51:151-178. 1997.
13. Dong, B. Q., W. Liu, X. H. Fan, D. Vijaykrishna, X. C. Tang, F. Gao, L. Li, G. J. Li, J. X. Zhang, L. Q. Yang, L. L. M. Poon, S. Y. Zhang, J. S. M. Peiris, G. J. D. Smith, H. Chen, and Y. Guan. Detection of a novel and highly divergent coronavirus from Asian leopard cats and Chinese ferret badgers in southern China. J. Virol. 81:6920-6926. 2007.
14. Fabricant, J. The early history of infectious bronchitis. Avian Dis. 42:648-650. 1998.
15. Farsang, A., C. Ros, L. H. M. Renströn, C. Baule, T. Soós, and S. Belák. Molecular epizootiology of infectious bronchitis virus in Sweden indicating the involvement of a vaccine strain. Avian Pathol. 31:229-236. 2002.
16. Hall, T. A. BioEdit a user-friendly biological sequence alignment editor and analysis. Available from: http://www.mbio.ncsu.edu/BioEdit/bioedit.html. 1999.
17. Hughes, L. A., C. Savage, C. Naylor, M. Bennett, J. Chantrey, and R. Jones. Genetically diverse coronaviruses in wild bird populations of northern England. Emerg. Infect. Dis. 15:1091-1094. 2009.
18. Hussain, S. J., Y. Pan, Y. Chen, J. Yang, Y. Xu, Y. Peng, Z. Wu, Y. Li, P. Zhu, D. Tien, and D. Guo. Identification of novel subgenomic RNAs and noncanonical transcription initiation signals of severe acute respiratory syndrome coronavirus. J. Virol. 79:5288-5295. 2005.
19. Ignjatovic, J., G. Gould, and S. Sapats. Isolation of a variant infectious virus in Australia that further illustrates diversity among emerging strains. Arch. Virol. 151:1567-1585. 2006.
20. Ignjatovic, J., and S. Sapats. Identification of previously unknown antigenic epitopes on the S and N proteins of avian infectious bronchitis virus. Arch. Virol. 150:1813-1831. 2005.
21. Jang, J., H. Sung, C. Song, and H. Kwon. Sequence analysis of the S1 glycoprotein gene of infectious bronchitis viruses: identification of a novel phylogenetic group in Korea. J. Vet. Sci. 8(4):401-407. 2007.
22. Jonassen, C. M., T. Kofstad, I. Larsen, A. Lovland, K. Handeland, A. Follestad, and A. Lillehaug. Molecular identification and characterization of novel coronaviruses infecting graylag geese (Anser anser), feral pigeons (Columba livia) and mallards (Anas platyrhynchos). J. Gen. Virol. 86:1597-1607. 2005.
23. Lai, M. M. C., and D. Cavanagh. The molecular biology of coronaviruses. Adv. Virus Res. 48:1-100. 1997.
24. Lee, C. Evolution of avian infectious bronchitis virus: genetic drift and recombination. Korean J. Vet. Serv. 25:97-103. 2002.
25. Lee, C. W., and M. W. Jackwood. Origin and evolution of Georgia 98 (GA98), a new serotype of avian infectious bronchitis virus. Virus Res. 80(1-2):33-39. 2001.
26. Liu, S., Q. Zhang, J. Chen, Z. Han, Y. Shao, X. Kong, and G. Tong. Identification of the avian infectious bronchitis coronaviruses with mutations in gene 3. Gene 412:12-25. 2008.
27. MacFarlane, R., and R. Verma. Sequence analysis of the gene coding for the S1 glycoprotein of infectious bronchitis virus (IBV) strains from New Zealand. Virus Genes 37:251-357. 2008.
28. MacKinley, E. T., D. A. Hilt, and M. W. Jackwood. Avian coronavirus infectious bronchitis attenuated live vaccines undergo selection of subpopulations and mutations following vaccination. Vaccine 26:1274-1284. 2008.
29. Mardani, K., A. H. Noormohammadi, J. I. Hooper, and G. F. Browning. Infectious bronchitis viruses with a novel genomic organization. J. Virol. 83:2013-2024. 2008.
30. Meulemmans, G., M. Boschmanns, M. Decaesstecker, T. P. Van der Berg, P. Denis, and D. Cavanagh. Epidemiology of infectious bronchitis virus in Belgian broilers: a retrospective study, 1986 to 1995. Avian Pathol. 30:411-421. 2001.
31. Muradrasoli, S., N. Mohamed, A. Hornyák, J. Fohlman, B. Olsen, S. Belák, and J. Blomberg. Broadly targeted multiprobe QPCR for detection of coronaviruses: Coronavirus is common among mallard ducks (Anas platyrhynchos). J. Virol. Methods 159:277-287. 2009.
32. Naqi, S., K. Gay, P. Patalla, S. Mondal, and R. Liu. Establishment of persistent avian infectious bronchitis virus infection in antibody-free and antibody-positive chickens. Avian Dis. 47:594-601. 2003.
33. Park, J. Y., S. I. Pak, H. W. Sung, J. H. Kim, C. S. Song, C. W. Lee, and H. M. Know. Variations in the nucleocapsid protein gene of infectious bronchitis viruses isolated in Korea. Virus Genes 31:153-162. 2005.
34. Poon, L. L. M., D. K. W. Chu, K. H. Chan, O. K. Wong, T. M. Ellis, Y. H. C. Leung, S. K. P. Lau, P. C. Y. Woo, K. Y. Suen, K. Y. Yuen, Y. Guan, and J. S. M. Peiris. Identification of a novel coronavirus in bats. J. Virol. 79:2001-2009. 2005.
35. Qian, D. H., G. J. Zhu, L. Z. Wu, and G. X. Hua. Isolation and characterization of a coronavirus from pigeons with pancreatitis. Am. J. Vet. Res. 67:1575-1579. 2006.
36. Rest, J. S., and D. P. Mindell. SARS associated coronavirus has a recombinant polymerase and coronaviruses have a history of host-shifting. Infect. Gen. Evol. 3:219-225. 2003.
37. Stavrinides, J., and D. S. Guttman. Mosaic evolution of the severe acute respiratory syndrome coronavirus. J. Virol. 78:76-82. 2004.
38. Sun, L., G. Zhang, J. Jing-wei, J. Jiang, J. Fub, T. Renb, W. C. Caob, M. Liao, and W. A. Liu. Massachusetts prototype like coronavirus isolated from wild peafowls is pathogenic to chickens. Virus Res. 130:121-128. 2007.
39. Tamura, K., J. Dudley, M. Nei, and S. Kumar. Mega4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-99. 2007.
40. Tang, X. C., J. X. Zhang, S. Y. Zhang, P. Wang, X. H. Fan, L. F. Li, G. Li, B. Q. Dong, W. Liu, C. L. Cheung, K. M. Xu, W. J. Song, D. Vijaykrishna, L. L. M. Poon, J. S. M. Peiris, G. J. D. Smith, H. Chen, and Y. Guan. Prevalence and genetic diversity of coronaviruses in bats from China. J. Virol. 80:7481-7490. 2006.
41. Thompson, J. D., D. G. Higgins, and T. J. Gibson. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 11:4673-4680. 1994.
42. Vijaykrishna, D., G. J. Smith, J. X. Zhang, J. S. Peiris, H. Chen, and Y. Guan. Evolutionary insights into the ecology of coronaviruses. J. Virol. 81:4012-4020. 2007.
43. Vijgen, L., E. Keyaerts, P. Lemey, P. Maes, K. V. Reeth, H. Nauwynck, M. Pensaert, and M. V. Ranst. Evolutionary history of the closely related group 2 coronaviruses: porcine hemagglutinating encephalo-myelitis virus, bovine coronavirus, and human coronavirus OC43. J. Virol. 80:7270-74. 2006.
44. Villarreal, L. Y. B., P. E. Brandão, J. L. Chacón, M. S. Assayag, P. C. Maiorka, P. Raffi, A. B. Saidenberg, R. C. Jones, and A. J. P. Ferreira. Orchitis in roosters with reduced fertility associated with avian infectious bronchitis virus and avian metapneumovirus infections. Avian Dis. 51:900-904. 2007.
45. Villarreal, L. Y. B., P. E. Brandão, J. L. Chacón, A. B. S. Saidenberg, M. S. Assayag, R. C. Jones, and A. J. P. Ferreira. Molecular characterization of infectious bronchitis virus strains isolated from the enteric contents of Brazilian laying hens and broilers. Avian Dis. 51:974-978. 2007.
46. Woo, P. C. Y., S. K. P. Lau, C. S. F. Lam, K. K. Y. Lai, Y. Huang, P. Lee, G. S. M. Luk, K. C. Dyrting, K. Chan, and K. Yuen. Comparative analysis of complete genome sequences of three avian coronaviruses reveals a novel group 3c coronavirus. J. Virol. 83:908-917. 2009.