Microbiota of Atlantic cod (Gadus morhua L.) rearing systems at pre- and posthatch stages and the effect of different treatments

Journal of Applied Microbiology

Volumn 109, Issue 5, 2010, Pages 1775-1789

  Lauzon, H L ^a,b   Gudmundsdottir, S ^c   Petursdottir, S K ^a   Reynisson, E ^a   Steinarsson, A ^d   Oddgeirsson, M ^d   Bjornsdottir, R ^a   Gudmundsdottir, B K ^b,c  

^a Matis ohf Iceland   (Iceland)

^b UNIVERSITY OF ICELAND   (Iceland)

^c UNIVERSITY OF ICELAND   (Iceland)

^d MARINE RESEARCH INSTITUTE   (Iceland)

Author keywords

Cod hatchery; Haemolysin; Microbiota; Probiotic; Quorum sensing; Siderophore

Indexed keywords

ANTIBIOTICS; BLOOD; DISINFECTION; RNA;

ANTIBIOTIC TREATMENT; COD HATCHERY; DISINFECTION TREATMENTS; HAEMOLYSINS; LARVAL SURVIVAL; MICROBIOTAS; OPERATIONAL TAXONOMIC UNITS; PROBIOTICS; QUORUM-SENSING; SIDEROPHORES;

MULTIVARIANT ANALYSIS;

ANTIBIOTIC AGENT; DISINFECTANT AGENT; HEMOLYSIN; PROBIOTIC AGENT; RIBOSOME RNA; SIDEROPHORE;

BACTERIUM; CULTIVATION; GADOID; MULTIVARIATE ANALYSIS; REARING; SAMPLING; SPAWNING; SURVIVAL; VIRULENCE;

ARTICLE; ATLANTIC COD; BACTERIAL VIRULENCE; BACTERIUM CULTURE; BACTERIUM ISOLATE; CONTROLLED STUDY; DISINFECTION; GAMMAPROTEOBACTERIA; GENETIC ANALYSIS; GENETIC HETEROGENEITY; GENOTYPE; HATCHERY; LARVA; MICROBIAL DIVERSITY; MICROFLORA; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; PHENOTYPE; QUORUM SENSING; ROTIFERA; SPAWNING; SURVIVAL;

BACTERIA (MICROORGANISMS); GADUS MORHUA; GAMMAPROTEOBACTERIA; OTUS; ROTIFERA;

EID: 78650454174     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2010.04806.x     Document Type: Article

References (52)

1. Austin, B., Austin, D., Sutherland, R., Thompson, F. and Swings, J. (2005) Pathogenicity of vibrios to rainbow trout (Oncorhynchus mykiss, Walbaum) and Artemia nauplii. Environ Microbiol 7, 1488-1495.
2. Bertani, G. (1951) Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J Bacteriol 62, 293-300.
3. Bjornsdottir, R., Johannsdottir, J., Coe, J., Smaradottir, H., Agustsson, T., Sigurgisladottir, S. and Gudmundsdottir, B.K. (2009) Survival and quality of halibut larvae (Hippoglossus hippoglossus L.) in intensive farming: possible impact of the intestinal bacterial community. Aquaculture 286, 53-63.
4. Blanch, A.R., Alsina, M., Simon, M. and Jofre, J. (1997) Determination of bacteria associated with reared turbot (Scophthalmus maximus) larvae. J Appl Microbiol 82, 729-734.
5. Bowman, J.P. and Nichols, D.S. (2005) Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp nov., Subsaximicrobium saxinquililnus sp nov., Subsaxibacter broadyi gen. nov., sp nov., Lacinutrix copepodicola gen. nov., sp nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia. Int J Syst Evol Microbiol 55, 1471-1486.
6. Bruhn, J.B., Dalsgaard, I., Nielsen, K.F., Buchholtz, C., Larsen, J.L. and Gram, L. (2005) Quorum sensing signal molecules (acylated homoserine lactones) in Gram-negative fish pathogenic bacteria. Dis Aquat Organ 65, 43-52.
7. Brunvold, L., Sandaa, R.A., Mikkelsen, H., Welde, E., Bleie, H. and Bergh, O. (2007) Characterisation of bacterial communities associated with early stages of intensively reared cod (Gadus morhua) using Denaturing Gradient Gel Electrophoresis (DGGE). Aquaculture 272, 319-327.
8. Cha, C., Gao, P., Chen, Y.C., Shaw, P.D. and Farrand, S.K. (1998) Production of acyl-homoserine lactone quorum-sensing signals by gram-negative plant-associated bacteria. Mol Plant Microbe Interact 11, 1119-1129.
9. Czajkowski, R. and Jafra, S. (2009) Quenching of acyl-homoserine lactone-dependent quorum sensing by enzymatic disruption of signal molecules. Acta Biochim Pol 56, 1-16.
10. Davidson, C.M. and Cronin, F. (1973) Medium for selective enumeration of lactic acid bacteria from foods. Appl Microbiol 26, 439-440.
11. Defoirdt, T., Boon, N., Bossier, P. and Verstraete, W. (2004) Disruption of bacterial quorum sensing: an unexplored strategy to fight infections in aquaculture. Aquaculture 240, 69-88.
12. Dong, Y.H., Wang, L.H. and Zhang, L.H. (2007) Quorum-quenching microbial infections: mechanisms and implications. Philos Trans R Soc Lond B Biol Sci 362, 1201-1211.
13. Fjellheim, A.J., Playfoot, K.J., Skjermo, J. and Vadstein, O. (2007) Vibrionaceae dominates the microflora antagonistic towards Listonella anguillarum in the intestine of cultured Atlantic cod (Gadus morhua L.) larvae. Aquaculture 269, 98-106.
14. Fouz, B., Toranzo, A.E., Biosca, E.G., Mazoy, R. and Amaro, C. (1994) Role of iron in the pathogenicity of Vibrio damsela for fish and mammals. FEMS Microbiol Lett 121, 181-188.
15. Gatesoupe, F.J. (2002) Probiotic and formaldehyde treatments of Artemia nauplii as food for larval pollack, Pollachius pollachius. Aquaculture 212, 347-360.
16. Gatesoupe, F.J. (2007) Live yeasts in the gut: natural occurrence, dietary introduction, and their effects on fish health and development. Aquaculture 267, 20-30.
17. Grisez, L., Reyniers, J., Verdonck, L., Swings, J. and Ollevier, F. (1997) Dominant intestinal microflora of sea bream and sea bass larvae, from two hatcheries, during larval development. Aquaculture 155, 387-399.
18. Guan, L.L., Onuki, H. and Kamino, K. (2000) Bacterial growth stimulation with exogenous siderophore and synthetic N-acyl homoserine lactone autoinducers under iron-limited and low-nutrient conditions. Appl Environ Microbiol 66, 2797-2803.
19. Hansen, G.H. and Olafsen, J.A. (1989) Bacterial colonization of cod (Gadus morhua L.) and halibut (Hippoglossus hippoglossus) eggs in marine aquaculture. Appl Environ Microbiol 55, 1435-1446.
20. Hansen, G.H. and Olafsen, J.A. (1999) Bacterial interactions in early life stages of marine cold water fish. Microb Ecol 38, 1-26.
21. Isnansetyo, A., Istiqomah, I., Muhtadi, Sinansari, S., Hernawan, R.K., Triyanto and Widada, J. (2009) A potential bacterial biocontrol agent, strain S2V2 against pathogenic marine Vibrio in aquaculture. World J Microbiol Biotechnol 25, 1103-1113.
22. Ivanova, E.P., Flavier, S. and Christen, R. (2004) Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Montellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54, 1773-1788.
23. Jensen, S., Ovreas, L., Bergh, O. and Torsvik, V. (2004) Phylogenetic analysis of bacterial communities associated with larvae of the Atlantic halibut propose succession from a uniform normal flora. Syst Appl Microbiol 27, 728-736.
24. Korsnes, K., Nicolaisen, O., Skar, C.K., Nerland, A.H. and Bergh, O. (2006) Bacteria in the gut of juvenile cod Gadus morhua fed live feed enriched with four different commercial diets. ICES J Mar Sci 63, 296-301.
25. Lauzon, H.L., Gudmundsdottir, S., Pedersen, M.H., Budde, B.B. and Gudmundsdottir, B.K. (2008) Isolation of putative probionts from cod rearing environment. Vet Microbiol 132, 328-339.
26. Lauzon, H.L., Gudmundsdottir, S., Steinarsson, A., Oddgeirsson, M., Petursdottir, S.K., Reynisson, E., Bjornsdottir, R. and Gudmundsdottir, B.K. (2010a) Effects of bacterial treatment at early stages of Atlantic cod (Gadus morhua L.) on larval survival and development. J Appl Microbiol 108, 624-632.
27. Lauzon, H.L., Magnadottir, B., Gudmundsdottir, B.K., Steinarsson, A., Arnason, I.O. and Gudmundsdottir, S. (2010b) Application of prospective probionts at early stages of Atlantic cod (Gadus morhua L.) rearing. Aquacult Res, in press, doi: .
28. Lee, S.O., Kato, J., Nakashima, K., Kuroda, A., Ikeda, T., Takiguchi, N. and Ohtake, H. (2002) Cloning and characterization of extracellular metal protease gene of the algicidal marine bacterium Pseudoalteromonas sp. strain A28. Biosci Biotechnol Biochem 66, 1366-1369.
29. Longeon, A., Peduzzi, J., Barthelemy, M., Corre, S., Nicolas, J.L. and Guyot, M. (2004) Purification and partial identification of novel antimicrobial protein from marine bacterium Pseudoalteromonas species strain x 4 53. Mar Biotechnol 6, 633-641.
30. Magarinos, B., Romalde, J.L., Lemos, M.L., Barja, J.L. and Toranzo, A.E. (1994) Iron uptake by Pasteurella piscicida and its role in pathogenicity for fish. Appl Environ Microbiol 60, 2990-2998.
31. McClean, K.H., Winson, M.K., Fish, L., Taylor, A., Chhabra, S.R., Camara, M., Daykin, M., Lamb, J.H. et al. (1997) Quorum sensing and Chromobacterium violaceum: exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology-Sgm 143, 3703-3711.
32. McIntosh, D., Ji, B., Forward, B.S., Puvanendran, V., Boyce, D. and Ritchie, R. (2008) Culture-independent characterization of the bacterial populations associated with cod (Gadus morhua L.) and live feed at an experimental hatchery facility using denaturing gradient gel electrophoresis. Aquaculture 275, 42-50.
33. Miyamoto, K., Tsujibo, H., Nukui, E., Itoh, H., Kaidzu, Y. and Inamori, Y. (2002) Isolation and characterization of the genes encoding two metalloproteases (MprI and MprII) from a marine bacterium, Alteromonas sp strain O-7. Biosci Biotechnol Biochem 66, 416-421.
34. Nealson, K.H., Wimpee, B. and Wimpee, C. (1993) Identification of Vibrio splendidus as a member of the planktonic luminous bacteria from the Persian Gulf and Kuwait region with LuxA probes. Appl Environ Microbiol 59, 2684-2689.
35. Orozco-Medina, C., Maeda-Martinez, A.M. and Lopez-Cortes, A. (2002) Effect of aerobic Gram-positive heterotrophic bacteria associated with Artemia franciscana cysts on the survival and development of its larvae. Aquaculture 213, 15-29.
36. Pilet, M.F., Dousset, X., Barre, R., Novel, G., Desmazeaud, M. and Piard, J.C. (1995) Evidence for 2 bacteriocins produced by Carnobacterium piscicola and Carnobacterium divergens isolated from fish and active against Listeria monocytogenes. J Food Prot 58, 256-262.
37. Plante, S., Pernet, F., Hache, R., Ritchie, R., Ji, B.J. and McIntosh, D. (2007) Ontogenetic variations in lipid class and fatty acid composition of haddock larvae Melanogrammus aeglefinus in relation to changes in diet and microbial environment. Aquaculture 263, 107-121.
38. Pujalte, M.J., Sitja-Bobadilla, A., Macian, M.C., Alvarez-Pellitero, P. and Garay, E. (2007) Occurrence and virulence of Pseudoalteromonas spp. in cultured gilthead sea bream (Sparus aurata L.) and European sea bass (Dicentrarchus labrax L.). Molecular and phenotypic characterisation of P. undina strain U58. Aquaculture 271, 47-53.
39. Quan, Z.X., Xiao, Y.P., Roh, S.W., Nam, Y.D., Chang, H.W., Shin, K.S., Rhee, S.K., Park, Y.H. et al. (2008) Joostella marina gen. nov., sp nov., a novel member of the family Flavobacteriaceae isolated from the East Sea. Int J Syst Evol Microbiol 58, 1388-1392.
40. Reid, H.I., Treasurer, J.W., Adam, B. and Birkbeck, T.H. (2009) Analysis of bacterial populations in the gut of developing cod larvae and identification of Vibrio logei, Vibrio anguillarum and Vibrio splendidus as pathogens of cod larvae. Aquaculture 288, 36-43.
41. Ringo, E., Sperstad, S., Myklebust, R., Mayhew, T.M., Mjelde, A., Melle, W. and Olsen, R.E. (2006) The effect of dietary krill supplementation on epithelium-associated bacteria in the hindgut of Atlantic salmon (Salmo salar L.): a microbial and electron microscopical study. Aquacult Res 37, 1644-1653.
42. Skjermo, J., Salvesen, I., Oie, G., Olsen, Y. and Vadstein, O. (1997) Microbially matured water: a technique for selection of a non-opportunistic bacterial flora in water that may improve performance of marine larvae. Aquacult Int 5, 13-28.
43. Stanbridge, L.H. and Board, R.G. (1994) A modification of the Pseudomonas selective medium, CFC, that allows differentiation between meat pseudomonads and Enterobacteriaceae. Lett Appl Microbiol 18, 327-328.
44. Stintzi, A., Evans, K., Meyer, J.M. and Poole, K. (1998) Quorum-sensing and siderophore biosynthesis in Pseudomonas aeruginosa: lasR/lasI mutants exhibit reduced pyoverdine biosynthesis. FEMS Microbiol Lett 166, 341-345.
45. Strom, E. and Ringo, E. (1993) Changes in bacterial flora in developing cod, Gadus morhua L., larvae after inoculation of Lactobacillus plantarum in the water. In Physiological and Biochemical Aspects of Fish Larval Development ed. Walther, H.F. pp. 226-228. University of Bergen: Bergen, Norway.
46. Tait, K., Williamson, H., Atkinson, S., Williams, P., Camara, M. and Joint, I. (2009) Turnover of quorum sensing signal molecules modulates cross-kingdom signalling. Environ Microbiol 11, 1792-1802.
47. Thomson, R., Macpherson, H.L., Riaza, A. and Birkbeck, T.H. (2005) Vibrio splendidus biotype 1 as a cause of mortalities in hatchery-reared larval turbot, Scophthalmus maximus (L.). J Appl Microbiol 99, 243-250.
48. Tinh, N.T.N., Yen, V.H.N., Dierckens, K., Sorgeloos, P. and Bossier, P. (2008) An acyl homoserine lactone-degrading microbial community improves the survival of first-feeding turbot larvae (Scophthalmus maximus L.). Aquaculture 285, 56-62.
49. Waters, C.M. and Bassler, B.L. (2005) Quorum sensing: cell-to-cell communication in bacteria. Annu Rev Cell Dev Biol 21, 319-346.
50. Winkelmann, G., Schmid, D.G., Nicholson, G., Jung, G. and Colquhoun, D.J. (2002) Bisucaberin - A dihydroxamate siderophore isolated from Vibrio salmonicida, an important pathogen of farmed Atlantic salmon (Salmo salar). Biometals 15, 153-160.
51. Wolf, M.K. and Crosa, J.H. (1986) Evidence for the role of a siderophore in promoting Vibrio anguillarum infections. J Gen Microbiol 132, 2949-2952.
52. Yoon, J.H., Lee, C.H., Kang, S.J. and Oh, T.K. (2005) Psychrobacter celer sp nov., isolated from sea water of the South Sea in Korea. Int J Syst Evol Microbiol 55, 1885-1890.