메뉴 건너뛰기




Volumn 38, Issue 22, 2010, Pages 8149-8163

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: Prevalence and possible functional roles

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE QUADRUPLEX; POTASSIUM;

EID: 78650442734     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq804     Document Type: Article
Times cited : (81)

References (101)
  • 2
    • 67049134254 scopus 로고    scopus 로고
    • 0-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells
    • 0-UTR of the MT3 matrix metalloproteinase mRNA represses translation in eukaryotic cells. Biochemistry, 48, 5313-5319.
    • (2009) Biochemistry , vol.48 , pp. 5313-5319
    • Morris, M.J.1    Basu, S.2
  • 4
    • 0024787884 scopus 로고
    • Monovalent cation-induced structure of telomeric DNA: The G-quartet model
    • Williamson, J.R., Raghuraman, M.K. and Cech, T.R. (1989) Monovalent cation-induced structure of telomeric DNA: the G-quartet model. Cell, 59, 871-880.
    • (1989) Cell , vol.59 , pp. 871-880
    • Williamson, J.R.1    Raghuraman, M.K.2    Cech, T.R.3
  • 7
    • 35448983988 scopus 로고    scopus 로고
    • Circular dichroism of quadruplex DNAs: Applications to structure, cation effects and ligand binding
    • Paramasivan, S., Rujan, I. and Bolton, P.H. (2007) Circular dichroism of quadruplex DNAs: applications to structure, cation effects and ligand binding. Methods, 43, 324-331.
    • (2007) Methods , vol.43 , pp. 324-331
    • Paramasivan, S.1    Rujan, I.2    Bolton, P.H.3
  • 8
    • 69949186768 scopus 로고    scopus 로고
    • A comparison of DNA and RNA quadruplex structures and stabilities
    • Joachimi, A., Benz, A. and Hartig, J.S. (2009) A comparison of DNA and RNA quadruplex structures and stabilities. Bioorg. Med. Chem., 17, 6811-6815.
    • (2009) Bioorg. Med. Chem. , vol.17 , pp. 6811-6815
    • Joachimi, A.1    Benz, A.2    Hartig, J.S.3
  • 10
    • 14344275144 scopus 로고    scopus 로고
    • Biological aspects of DNA/ RNA quadruplexes
    • Shafer, R.H. and Smirnov, I. (2000) Biological aspects of DNA/ RNA quadruplexes. Biopolymers, 56, 209-227.
    • (2000) Biopolymers , vol.56 , pp. 209-227
    • Shafer, R.H.1    Smirnov, I.2
  • 11
    • 33646580058 scopus 로고    scopus 로고
    • Engineering the quadruplex fold: Nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes
    • Tang, C.F. and Shafer, R.H. (2006) Engineering the quadruplex fold: nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes. J. Am. Chem. Soc., 128, 5966-5973.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 5966-5973
    • Tang, C.F.1    Shafer, R.H.2
  • 12
    • 0029908928 scopus 로고    scopus 로고
    • The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: A thermodynamic analysis by 1H NMR
    • Hud, N.V., Smith, F.W., Anet, F.A. and Feigon, J. (1996) The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: a thermodynamic analysis by 1H NMR. Biochemistry, 35, 15383-15390.
    • (1996) Biochemistry , vol.35 , pp. 15383-15390
    • Hud, N.V.1    Smith, F.W.2    Anet, F.A.3    Feigon, J.4
  • 13
    • 33646359481 scopus 로고    scopus 로고
    • Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures
    • Hazel, P., Parkinson, G.N. and Neidle, S. (2006) Predictive modelling of topology and loop variations in dimeric DNA quadruplex structures. Nucleic Acids Res., 34, 2117-2127.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 2117-2127
    • Hazel, P.1    Parkinson, G.N.2    Neidle, S.3
  • 14
    • 0037126694 scopus 로고    scopus 로고
    • Molecular crowding regulates the structural switch of the DNA G-quadruplex
    • Miyoshi, D., Nakao, A. and Sugimoto, N. (2002) Molecular crowding regulates the structural switch of the DNA G-quadruplex. Biochemistry, 41, 15017-15024.
    • (2002) Biochemistry , vol.41 , pp. 15017-15024
    • Miyoshi, D.1    Nakao, A.2    Sugimoto, N.3
  • 15
    • 0345868518 scopus 로고    scopus 로고
    • Duplex dissociation of telomere DNAs induced by molecular crowding
    • Miyoshi, D., Matsumura, S., Nakano, S. and Sugimoto, N. (2004) Duplex dissociation of telomere DNAs induced by molecular crowding. J. Am. Chem. Soc., 126, 165-169.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 165-169
    • Miyoshi, D.1    Matsumura, S.2    Nakano, S.3    Sugimoto, N.4
  • 16
    • 29244487065 scopus 로고    scopus 로고
    • The effect of osmolytes and small molecule on quadruplex-WC duplex equilibrium: A fluorescence resonance energy transfer study
    • Kumar, N. and Maiti, S. (2005) The effect of osmolytes and small molecule on quadruplex-WC duplex equilibrium: a fluorescence resonance energy transfer study. Nucleic Acids Res., 33, 6723-6732.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 6723-6732
    • Kumar, N.1    Maiti, S.2
  • 17
    • 33745374520 scopus 로고    scopus 로고
    • Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions
    • Miyoshi, D., Karimata, H. and Sugimoto, N. (2006) Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions. J. Am. Chem. Soc., 128, 7957-7963.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 7957-7963
    • Miyoshi, D.1    Karimata, H.2    Sugimoto, N.3
  • 18
    • 78649434508 scopus 로고    scopus 로고
    • Role of molecular crowding in perturbing quadruplex-Watson Crick duplex equilibrium
    • Kumar, N. and Maiti, S. (2008) Role of molecular crowding in perturbing quadruplex-Watson Crick duplex equilibrium. Nucleic Acids Symp. Ser., 157-158.
    • (2008) Nucleic Acids Symp. Ser. , pp. 157-158
    • Kumar, N.1    Maiti, S.2
  • 19
    • 29144475324 scopus 로고    scopus 로고
    • Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis
    • Gollnick, P., Babitzke, P., Antson, A. and Yanofsky, C. (2005) Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annu. Rev. Genet., 39, 47-68.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 47-68
    • Gollnick, P.1    Babitzke, P.2    Antson, A.3    Yanofsky, C.4
  • 20
    • 20444478991 scopus 로고    scopus 로고
    • Riboswitches as versatile gene control elements
    • Tucker, B.J. and Breaker, R.R. (2005) Riboswitches as versatile gene control elements. Curr. Opin. Struct. Biol., 15, 342-348.
    • (2005) Curr. Opin. Struct. Biol. , vol.15 , pp. 342-348
    • Tucker, B.J.1    Breaker, R.R.2
  • 21
    • 20144364292 scopus 로고    scopus 로고
    • Prevalence of quadruplexes in the human genome
    • Huppert, J.L. and Balasubramanian, S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2908-2916
    • Huppert, J.L.1    Balasubramanian, S.2
  • 22
    • 20144369806 scopus 로고    scopus 로고
    • Highly prevalent putative quadruplex sequence motifs in human DNA
    • DOI 10.1093/nar/gki553
    • Todd, A.K., Johnston, M. and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33, 2901-2907. (Pubitemid 41511229)
    • (2005) Nucleic Acids Research , vol.33 , Issue.9 , pp. 2901-2907
    • Todd, A.K.1    Johnston, M.2    Neidle, S.3
  • 23
    • 37349043972 scopus 로고    scopus 로고
    • Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends
    • Azzalin, C.M., Reichenbach, P., Khoriauli, L., Giulotto, E. and Lingner, J. (2007) Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends. Science, 318, 798-801.
    • (2007) Science , vol.318 , pp. 798-801
    • Azzalin, C.M.1    Reichenbach, P.2    Khoriauli, L.3    Giulotto, E.4    Lingner, J.5
  • 24
    • 33846928449 scopus 로고    scopus 로고
    • G-quadruplexes in promoters throughout the human genome
    • Huppert, J.L. and Balasubramanian, S. (2007) G-quadruplexes in promoters throughout the human genome. Nucleic Acids Res., 35, 406-413.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 26
    • 38549092075 scopus 로고    scopus 로고
    • QuadBase: Genome-wide database of G4 DNA-occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes
    • Yadav, V.K., Abraham, J.K., Mani, P., Kulshrestha, R. and Chowdhury, S. (2008) QuadBase: genome-wide database of G4 DNA-occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. Nucleic Acids Res., 36, D381-D385.
    • (2008) Nucleic Acids Res. , vol.36
    • Yadav, V.K.1    Abraham, J.K.2    Mani, P.3    Kulshrestha, R.4    Chowdhury, S.5
  • 28
    • 58549096734 scopus 로고    scopus 로고
    • Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression
    • Thakur, R.K., Kumar, P., Halder, K., Verma, A., Kar, A., Parent, J.L., Basundra, R., Kumar, A. and Chowdhury, S. (2009) Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression. Nucleic Acids Res., 37, 172-183.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 172-183
    • Thakur, R.K.1    Kumar, P.2    Halder, K.3    Verma, A.4    Kar, A.5    Parent, J.L.6    Basundra, R.7    Kumar, A.8    Chowdhury, S.9
  • 29
    • 77954925925 scopus 로고    scopus 로고
    • Cellular nucleic-acid-binding protein, a transcriptional enhancer of c-Myc, promotes the formation of parallel G-quadruplexes
    • Borgognone, M., Armas, P. and Calcaterra, N.B. (2010) Cellular nucleic-acid-binding protein, a transcriptional enhancer of c-Myc, promotes the formation of parallel G-quadruplexes. Biochem. J., 428, 491-498.
    • (2010) Biochem. J. , vol.428 , pp. 491-498
    • Borgognone, M.1    Armas, P.2    Calcaterra, N.B.3
  • 30
    • 77954615589 scopus 로고    scopus 로고
    • The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element
    • Cogoi, S., Paramasivam, M., Membrino, A., Yokoyama, K.K. and Xodo, L.E. (2010) The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element. J. Biol. Chem., 285, 22003-22016.
    • (2010) J. Biol. Chem. , vol.285 , pp. 22003-22016
    • Cogoi, S.1    Paramasivam, M.2    Membrino, A.3    Yokoyama, K.K.4    Xodo, L.E.5
  • 31
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • Siddiqui-Jain, A., Grand, C.L., Bearss, D.J. and Hurley, L.H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription. Proc. Natl Acad. Sci. USA, 99, 11593-11598.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 32
    • 38049017592 scopus 로고    scopus 로고
    • Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4
    • Qin, Y., Rezler, E.M., Gokhale, V., Sun, D. and Hurley, L.H. (2007) Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4. Nucleic Acids Res., 35, 7698-7713.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 7698-7713
    • Qin, Y.1    Rezler, E.M.2    Gokhale, V.3    Sun, D.4    Hurley, L.H.5
  • 33
    • 60549101098 scopus 로고    scopus 로고
    • Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells
    • Cogoi, S., Paramasivam, M., Filichev, V., Geci, I., Pedersen, E.B. and Xodo, L.E. (2009) Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells. J. Med. Chem., 52, 564-568.
    • (2009) J. Med. Chem. , vol.52 , pp. 564-568
    • Cogoi, S.1    Paramasivam, M.2    Filichev, V.3    Geci, I.4    Pedersen, E.B.5    Xodo, L.E.6
  • 34
    • 69949144600 scopus 로고    scopus 로고
    • Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein
    • Gonzalez, V., Guo, K., Hurley, L. and Sun, D. (2009) Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein. J. Biol. Chem., 284, 23622-23635.
    • (2009) J. Biol. Chem. , vol.284 , pp. 23622-23635
    • Gonzalez, V.1    Guo, K.2    Hurley, L.3    Sun, D.4
  • 35
    • 66249142691 scopus 로고    scopus 로고
    • Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: Implications for transcription
    • Paramasivam, M., Membrino, A., Cogoi, S., Fukuda, H., Nakagama, H. and Xodo, L.E. (2009) Protein hnRNP A1 and its derivative Up1 unfold quadruplex DNA in the human KRAS promoter: implications for transcription. Nucleic Acids Res., 37, 2841-2853.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 2841-2853
    • Paramasivam, M.1    Membrino, A.2    Cogoi, S.3    Fukuda, H.4    Nakagama, H.5    Xodo, L.E.6
  • 36
    • 75149116665 scopus 로고    scopus 로고
    • Cellular uptake and binding of guanidine-modified phthalocyanines to KRAS/HRAS G-quadruplexes
    • Membrino, A., Paramasivam, M., Cogoi, S., Alzeer, J., Luedtke, N.W. and Xodo, L.E. (2010) Cellular uptake and binding of guanidine-modified phthalocyanines to KRAS/HRAS G-quadruplexes. Chem. Commun., 46, 625-627.
    • (2010) Chem. Commun. , vol.46 , pp. 625-627
    • Membrino, A.1    Paramasivam, M.2    Cogoi, S.3    Alzeer, J.4    Luedtke, N.W.5    Xodo, L.E.6
  • 37
    • 73349127073 scopus 로고    scopus 로고
    • Genome-wide colonization of gene regulatory elements by G4 DNA motifs
    • Du, Z., Zhao, Y. and Li, N. (2009) Genome-wide colonization of gene regulatory elements by G4 DNA motifs. Nucleic Acids Res., 37, 6784-6798.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 6784-6798
    • Du, Z.1    Zhao, Y.2    Li, N.3
  • 38
    • 67249138595 scopus 로고    scopus 로고
    • Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells
    • Verma, A., Yadav, V.K., Basundra, R., Kumar, A. and Chowdhury, S. (2009) Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells. Nucleic Acids Res., 37, 4194-4204.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 4194-4204
    • Verma, A.1    Yadav, V.K.2    Basundra, R.3    Kumar, A.4    Chowdhury, S.5
  • 39
    • 73149103952 scopus 로고    scopus 로고
    • Repression of translation of human estrogen receptor alpha by G-quadruplex formation
    • Balkwill, G.D., Derecka, K., Garner, T.P., Hodgman, C., Flint, A.P.F. and Searle, M.S. (2009) Repression of translation of human estrogen receptor alpha by G-quadruplex formation. Biochemistry, 48, 11487-11495.
    • (2009) Biochemistry , vol.48 , pp. 11487-11495
    • Balkwill, G.D.1    Derecka, K.2    Garner, T.P.3    Hodgman, C.4    Flint, A.P.F.5    Searle, M.S.6
  • 42
    • 45749139174 scopus 로고    scopus 로고
    • Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
    • Arora, A., Dutkiewicz, M., Scaria, V., Hariharan, M., Maiti, S. and Kurreck, J. (2008) Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif. RNA, 14, 1290-1296.
    • (2008) RNA , vol.14 , pp. 1290-1296
    • Arora, A.1    Dutkiewicz, M.2    Scaria, V.3    Hariharan, M.4    Maiti, S.5    Kurreck, J.6
  • 43
    • 0028556501 scopus 로고
    • A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA
    • Christiansen, J., Kofod, M. and Nielsen, F.C. (1994) A guanosine quadruplex and two stable hairpins flank a major cleavage site in insulin-like growth factor II mRNA. Nucleic Acids Res., 22, 5709-5716.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5709-5716
    • Christiansen, J.1    Kofod, M.2    Nielsen, F.C.3
  • 44
    • 0026575221 scopus 로고
    • Selection of single-stranded DNA molecules that bind and inhibit human thrombin
    • Bock, L.C., Griffin, L.C., Latham, J.A., Vermaas, E.H. and Toole, J.J. (1992) Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature, 355, 564-566.
    • (1992) Nature , vol.355 , pp. 564-566
    • Bock, L.C.1    Griffin, L.C.2    Latham, J.A.3    Vermaas, E.H.4    Toole, J.J.5
  • 45
    • 0027467617 scopus 로고
    • Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution
    • Macaya, R.F., Schultze, P., Smith, F.W., Roe, J.A. and Feigon, J. (1993) Thrombin-binding DNA aptamer forms a unimolecular quadruplex structure in solution. Proc. Natl Acad. Sci. USA, 90, 3745-3749.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3745-3749
    • MacAya, R.F.1    Schultze, P.2    Smith, F.W.3    Roe, J.A.4    Feigon, J.5
  • 46
    • 0027537022 scopus 로고
    • A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA
    • Wang, K.Y., McCurdy, S., Shea, R.G., Swaminathan, S. and Bolton, P.H. (1993) A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. Biochemistry, 32, 1899-1904. (Pubitemid 23086037)
    • (1993) Biochemistry , vol.32 , Issue.8 , pp. 1899-1904
    • Ke Yu Wang1    McCurdy, S.2    Shea, R.G.3    Swaminathan, S.4    Bolton, P.H.5
  • 47
    • 0035900649 scopus 로고    scopus 로고
    • Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
    • Darnell, J.C., Jensen, K.B., Jin, P., Brown, V., Warren, S.T. and Darnell, R.B. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell, 107, 489-499.
    • (2001) Cell , vol.107 , pp. 489-499
    • Darnell, J.C.1    Jensen, K.B.2    Jin, P.3    Brown, V.4    Warren, S.T.5    Darnell, R.B.6
  • 48
    • 0035801393 scopus 로고    scopus 로고
    • The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif
    • Schaeffer, C., Bardoni, B., Mandel, J.L., Ehresmann, B., Ehresmann, C. and Moine, H. (2001) The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J., 20, 4803-4813.
    • (2001) EMBO J. , vol.20 , pp. 4803-4813
    • Schaeffer, C.1    Bardoni, B.2    Mandel, J.L.3    Ehresmann, B.4    Ehresmann, C.5    Moine, H.6
  • 49
    • 34948898592 scopus 로고    scopus 로고
    • The tetraplex (CGG)n destabilizing proteins hnRNP A2 and CBF-A enhance the in vivo translation of fragile X premutation mRNA
    • Khateb, S., Weisman-Shomer, P., Hershco-Shani, I., Ludwig, A.L. and Fry, M. (2007) The tetraplex (CGG)n destabilizing proteins hnRNP A2 and CBF-A enhance the in vivo translation of fragile X premutation mRNA. Nucleic Acids Res., 35, 5775-5788.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 5775-5788
    • Khateb, S.1    Weisman-Shomer, P.2    Hershco-Shani, I.3    Ludwig, A.L.4    Fry, M.5
  • 50
    • 0027533742 scopus 로고
    • Evidence for interstrand quadruplex formation in the dimerization of human immunodeficiency virus 1 genomic RNA
    • Sundquist, W.I. and Heaphy, S. (1993) Evidence for interstrand quadruplex formation in the dimerization of human immunodeficiency virus 1 genomic RNA. Proc. Natl Acad. Sci. USA, 90, 3393-3397.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 3393-3397
    • Sundquist, W.I.1    Heaphy, S.2
  • 51
    • 71749095786 scopus 로고    scopus 로고
    • A recombination hot spot in HIV-1 contains guanosine runs that can form G-quartet structure and promote strand transfer in vitro
    • Shen, W., Gao, L., Balakrishnan, M. and Bambara, R.A. (2009) A recombination hot spot in HIV-1 contains guanosine runs that can form G-quartet structure and promote strand transfer in vitro. J. Biol. Chem., 284, 33883-33893.
    • (2009) J. Biol. Chem. , vol.284 , pp. 33883-33893
    • Shen, W.1    Gao, L.2    Balakrishnan, M.3    Bambara, R.A.4
  • 52
    • 41949093057 scopus 로고    scopus 로고
    • Exploring the differential recognition of DNA G-quadruplex targets by small molecules using dynamic combinatorial chemistry
    • Bugaut, A., Jantos, K., Wietor, J.L., Rodriguez, R., Sanders, J.K. and Balasubramanian, S. (2008) Exploring the differential recognition of DNA G-quadruplex targets by small molecules using dynamic combinatorial chemistry. Angew. Chem., Int. Ed., 47, 2677-2680.
    • (2008) Angew. Chem. Int. Ed. , vol.47 , pp. 2677-2680
    • Bugaut, A.1    Jantos, K.2    Wietor, J.L.3    Rodriguez, R.4    Sanders, J.K.5    Balasubramanian, S.6
  • 53
    • 39049147645 scopus 로고    scopus 로고
    • A hitchhiker's guide to G-quadruplex ligands
    • Monchaud, D. and Teulade-Fichou, M.P. (2008) A hitchhiker's guide to G-quadruplex ligands. Org. Biomol. Chem., 6, 627-636.
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 627-636
    • Monchaud, D.1    Teulade-Fichou, M.P.2
  • 54
    • 38549087401 scopus 로고    scopus 로고
    • GRSDB2 and GRS-UTRdb: Databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs
    • Kikin, O., Zappala, Z., D'Antonio, L. and Bagga, P.S. (2008) GRSDB2 and GRS-UTRdb: databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs. Nucleic Acids Res., 36, D141-D148.
    • (2008) Nucleic Acids Res. , vol.36
    • Kikin, O.1    Zappala, Z.2    D'Antonio, L.3    Bagga, P.S.4
  • 55
    • 0001123955 scopus 로고
    • Mechanisms of salt tolerance in nonhalophytes
    • Greenway, H. and Munns, R. (1980) Mechanisms of salt tolerance in nonhalophytes. Annu. Rev. Plant Physiol., 31, 149-190.
    • (1980) Annu. Rev. Plant Physiol. , vol.31 , pp. 149-190
    • Greenway, H.1    Munns, R.2
  • 56
    • 0034899261 scopus 로고    scopus 로고
    • Transgenic salt-tolerant tomato plants accumulate salt in foliage but not in fruit
    • Zhang, H.X. and Blumwald, E. (2001) Transgenic salt-tolerant tomato plants accumulate salt in foliage but not in fruit. Nat. Biotechnol., 19, 765-768.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 765-768
    • Zhang, H.X.1    Blumwald, E.2
  • 65
    • 79960788858 scopus 로고    scopus 로고
    • Sequencing and analysis of the Nicotiana tabacum genome
    • Opperman, C., Burke, M. and Lommel, S.A. (2007) Sequencing and analysis of the Nicotiana tabacum genome. Recent Adv. Tob. Sci., 33, 5-14.
    • (2007) Recent Adv. Tob. Sci. , vol.33 , pp. 5-14
    • Opperman, C.1    Burke, M.2    Lommel, S.A.3
  • 67
    • 9144231248 scopus 로고    scopus 로고
    • BGI-RIS: An integrated information resource and comparative analysis workbench for rice genomics
    • Zhao, W., Wang, J., He, X., Huang, X., Jiao, Y., Dai, M., Wei, S., Fu, J., Chen, Y., Ren, X. et al. (2004) BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res., 32, D377-D382.
    • (2004) Nucleic Acids Res. , vol.32
    • Zhao, W.1    Wang, J.2    He, X.3    Huang, X.4    Jiao, Y.5    Dai, M.6    Wei, S.7    Fu, J.8    Chen, Y.9    Ren, X.10
  • 75
    • 76349107608 scopus 로고    scopus 로고
    • Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH
    • Rajendran, A., Nakano, S. and Sugimoto, N. (2010) Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH. Chem. Commun., 46, 1299-1301.
    • (2010) Chem. Commun. , vol.46 , pp. 1299-1301
    • Rajendran, A.1    Nakano, S.2    Sugimoto, N.3
  • 76
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • Maere, S., Heymans, K. and Kuiper, M. (2005) BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics, 21, 3448-3449.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 80
    • 43049175080 scopus 로고    scopus 로고
    • Characterization of tertiary folding of RNA by circular dichroism and urea
    • Sosnick, T.R. (2001) Characterization of tertiary folding of RNA by circular dichroism and urea. Curr. Protoc. Nucleic Acid Chem., 4, 11.5.1-11.5.10.
    • (2001) Curr. Protoc. Nucleic Acid Chem. , vol.4 , pp. 1151-11510
    • Sosnick, T.R.1
  • 81
    • 0032508468 scopus 로고    scopus 로고
    • Following G-quartet formation by UV-spectroscopy
    • Mergny, J.L., Phan, A.T. and Lacroix, L. (1998) Following G-quartet formation by UV-spectroscopy. FEBS letters, 435, 74-78.
    • (1998) FEBS Letters , vol.435 , pp. 74-78
    • Mergny, J.L.1    Phan, A.T.2    Lacroix, L.3
  • 82
    • 34447541999 scopus 로고    scopus 로고
    • RNA quadruplex-based modulation of gene expression
    • Wieland, M. and Hartig, J.S. (2007) RNA quadruplex-based modulation of gene expression. Chem. Biol., 14, 757-763.
    • (2007) Chem. Biol. , vol.14 , pp. 757-763
    • Wieland, M.1    Hartig, J.S.2
  • 83
    • 0024296996 scopus 로고
    • Characterization of highly repetitive sequences of Arabidopsis thaliana
    • Simoens, C.R., Gielen, J., Van Montagu, M. and Inze, D. (1988) Characterization of highly repetitive sequences of Arabidopsis thaliana. Nucleic Acids Res., 16, 6753-6766.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 6753-6766
    • Simoens, C.R.1    Gielen, J.2    Van Montagu, M.3    Inze, D.4
  • 84
    • 0025818312 scopus 로고
    • The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences
    • Richards, E.J., Goodman, H.M. and Ausubel, F.M. (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere-similar sequences. Nucleic Acids Res., 19, 3351-3357.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3351-3357
    • Richards, E.J.1    Goodman, H.M.2    Ausubel, F.M.3
  • 85
    • 0027212589 scopus 로고
    • Interstitial localization of telomeric DNA sequences in the Indian muntjac chromosomes: Further evidence for tandem chromosome fusions in the karyotypic evolution of the Asian muntjacs
    • Lee, C., Sasi, R. and Lin, C.C. (1993) Interstitial localization of telomeric DNA sequences in the Indian muntjac chromosomes: further evidence for tandem chromosome fusions in the karyotypic evolution of the Asian muntjacs. Cytogenet. Cell Genet., 63, 156-159.
    • (1993) Cytogenet. Cell Genet. , vol.63 , pp. 156-159
    • Lee, C.1    Sasi, R.2    Lin, C.C.3
  • 89
    • 77952997562 scopus 로고    scopus 로고
    • Prevalence of alternative splicing choices in Arabidopsis thaliana
    • English, A.C., Patel, K.S. and Loraine, A.E. (2010) Prevalence of alternative splicing choices in Arabidopsis thaliana. BMC Plant Biol., 10, 102.
    • (2010) BMC Plant Biol. , vol.10 , pp. 102
    • English, A.C.1    Patel, K.S.2    Loraine, A.E.3
  • 90
    • 0034099030 scopus 로고    scopus 로고
    • The Arabidopsis splicing factor SR1 is regulated by alternative splicing
    • Lazar, G. and Goodman, H.M. (2000) The Arabidopsis splicing factor SR1 is regulated by alternative splicing. Plant Mol. Biol., 42, 571-581.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 571-581
    • Lazar, G.1    Goodman, H.M.2
  • 91
    • 33847343883 scopus 로고    scopus 로고
    • Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: Regulation by hormones and stresses
    • Palusa, S.G., Ali, G.S. and Reddy, A.S. (2007) Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses. Plant J. 49, 1091-1107.
    • (2007) Plant J. , vol.49 , pp. 1091-1107
    • Palusa, S.G.1    Ali, G.S.2    Reddy, A.S.3
  • 92
    • 0036550093 scopus 로고    scopus 로고
    • Alternative splicing and the control of flowering time
    • Eckardt, N.A. (2002) Alternative splicing and the control of flowering time. Plant Cell, 14, 743-747.
    • (2002) Plant Cell , vol.14 , pp. 743-747
    • Eckardt, N.A.1
  • 93
    • 34250813107 scopus 로고    scopus 로고
    • Alternative splicing of pre-messenger RNAs in plants in the genomic era
    • Reddy, A.S. (2007) Alternative splicing of pre-messenger RNAs in plants in the genomic era. Annu. Rev. Plant Biol., 58, 267-294.
    • (2007) Annu. Rev. Plant Biol. , vol.58 , pp. 267-294
    • Reddy, A.S.1
  • 95
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 96
    • 0029074362 scopus 로고
    • Duplex to quadruplex equilibrium of the self-complementary oligonucleotide d(GGGGCCCC)
    • Deng, H. and Braunlin, W.H. (1995) Duplex to quadruplex equilibrium of the self-complementary oligonucleotide d(GGGGCCCC). Biopolymers, 35, 677-681.
    • (1995) Biopolymers , vol.35 , pp. 677-681
    • Deng, H.1    Braunlin, W.H.2
  • 97
    • 21244484548 scopus 로고    scopus 로고
    • The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
    • Pal, M., Ponticelli, A.S. and Luse, D.S. (2005) The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell, 19, 101-110.
    • (2005) Mol. Cell , vol.19 , pp. 101-110
    • Pal, M.1    Ponticelli, A.S.2    Luse, D.S.3
  • 98
    • 0033039863 scopus 로고    scopus 로고
    • Specific transcriptional pausing activates polyadenylation in a coupled in vitro system
    • Yonaha, M. and Proudfoot, N.J. (1999) Specific transcriptional pausing activates polyadenylation in a coupled in vitro system. Mol. Cell, 3, 593-600.
    • (1999) Mol. Cell , vol.3 , pp. 593-600
    • Yonaha, M.1    Proudfoot, N.J.2
  • 100
    • 84982056073 scopus 로고
    • A hypothesis relating critical potassium concentrations for growth to the distribution and functions of this ion in the plant cell
    • Leigh, R.A. and Wyn Jones, R.G. (1984) A hypothesis relating critical potassium concentrations for growth to the distribution and functions of this ion in the plant cell. New Phytol., 97, 1-13.
    • (1984) New Phytol. , vol.97 , pp. 1-13
    • Leigh, R.A.1    Wyn Jones, R.G.2
  • 101
    • 0000254931 scopus 로고    scopus 로고
    • Potassium homeostasis and membrane transport
    • Leigh, R.A. (2001) Potassium homeostasis and membrane transport. J. Plant Nutr. Soil Sci., 164, 193-198.
    • (2001) J. Plant Nutr. Soil Sci. , vol.164 , pp. 193-198
    • Leigh, R.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.