메뉴 건너뛰기




Volumn 21, Issue 3, 2004, Pages 555-562

Dramatic Diversity of Ciliate Histone H4 Genes Revealed by Comparisons of Patterns of Substitutions and Paralog Divergences among Eukaryotes

Author keywords

Chromosomal rearrangements; Ciliates; Fate of paralogs; Histone H4; Macronucleus; Protein evolution

Indexed keywords

HISTONE H4;

EID: 1542614590     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msh048     Document Type: Article
Times cited : (42)

References (42)
  • 1
    • 0031936015 scopus 로고    scopus 로고
    • Evolution of histone H4 and H3 genes in different ciliate lineages
    • Bernhard, D., and M. Schlegel. 1998. Evolution of histone H4 and H3 genes in different ciliate lineages. J. Mol. Evol. 46:344-354.
    • (1998) J. Mol. Evol. , vol.46 , pp. 344-354
    • Bernhard, D.1    Schlegel, M.2
  • 2
    • 84979168457 scopus 로고
    • Actin coding regions: Gene family evolution and use as a phylogenetic marker
    • Bhattacharya, D., and J. Ehlting. 1995. Actin coding regions: gene family evolution and use as a phylogenetic marker. Archiv. fur Protistenkunde 145:155-164.
    • (1995) Archiv. fur Protistenkunde , vol.145 , pp. 155-164
    • Bhattacharya, D.1    Ehlting, J.2
  • 4
    • 0031928773 scopus 로고    scopus 로고
    • New Insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences
    • Budin, A., and H. Philippe. 1998. New Insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequences. Mol. Biol. Evol. 15:943-956.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 943-956
    • Budin, A.1    Philippe, H.2
  • 5
    • 0036208071 scopus 로고    scopus 로고
    • The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa
    • Cavalier-Smith, T. 2002. The phagotrophic origin of eukaryotes and phylogenetic classification of protozoa. Int. J. Syst. Evol. Microbiol. 52:297-354.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 297-354
    • Cavalier-Smith, T.1
  • 7
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 8
    • 0022180868 scopus 로고
    • Amino-acid composition and the evolutionary rates of protein-coding genes
    • Graur, D. 1985. Amino-acid composition and the evolutionary rates of protein-coding genes. J. Mol. Evol. 22:53-62.
    • (1985) J. Mol. Evol. , vol.22 , pp. 53-62
    • Graur, D.1
  • 9
    • 0028342845 scopus 로고
    • The evolution of functionally novel proteins after gene duplication
    • Hughes, A. L. 1994. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B Biol. Sci. 256: 119-124.
    • (1994) Proc. R. Soc. Lond. B Biol. Sci. , vol.256 , pp. 119-124
    • Hughes, A.L.1
  • 11
    • 0035989021 scopus 로고    scopus 로고
    • Evolution of duplicated alpha-tubulin genes in ciliates
    • Israel, R. L., S. L. Kosakovsky Pond, S. V. Muse, and L. A. Katz. 2002. Evolution of duplicated alpha-tubulin genes in ciliates. Evolution 56:1110-1122.
    • (2002) Evolution , vol.56 , pp. 1110-1122
    • Israel, R.L.1    Kosakovsky Pond, S.L.2    Muse, S.V.3    Katz, L.A.4
  • 12
    • 0036405276 scopus 로고    scopus 로고
    • Genome remodeling in ciliated protozoa
    • Jahn, C. L., and L. A. Klobutcher. 2002. Genome remodeling in ciliated protozoa. Ann. Rev. Microbiol. 56:489-520.
    • (2002) Ann. Rev. Microbiol. , vol.56 , pp. 489-520
    • Jahn, C.L.1    Klobutcher, L.A.2
  • 13
    • 0034915592 scopus 로고    scopus 로고
    • Evolution of nuclear dualism in ciliates: A reanalysis in light of recent molecular data
    • Katz, L. A. 2001. Evolution of nuclear dualism in ciliates: a reanalysis in light of recent molecular data. Int. J. Syst. Evol. Microbiol. 51:1587-1592.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1587-1592
    • Katz, L.A.1
  • 14
    • 0026613365 scopus 로고
    • The early evolution of eukaryotes - A geological perspective
    • Knoll, A. H. 1992. The early evolution of eukaryotes - a geological perspective. Science 256:622-627.
    • (1992) Science , vol.256 , pp. 622-627
    • Knoll, A.H.1
  • 16
    • 0001531620 scopus 로고
    • Use of ranks in one-criterion analysis of variance
    • Kruskal, W. H., and W. A. Wallis. 1953. Use of ranks in one-criterion analysis of variance (errata). J. Am. Stat. Assoc. 48:907-911.
    • (1953) J. Am. Stat. Assoc. , vol.48 , pp. 907-911
    • Kruskal, W.H.1    Wallis, W.A.2
  • 17
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 angstrom resolution
    • Luger, K., A. W. Mader, R. K. Richmond, D. F. Sargent, and T. J. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8 angstrom resolution. Nature 389:251-260.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mader, A.W.2    Richmond, R.K.3    Sargent, D.F.4    Richmond, T.J.5
  • 18
    • 0033823050 scopus 로고    scopus 로고
    • Unexpectedly high variability of the histone H4 gene in Leishmania
    • Lukes, J., and D. A. Maslov. 2000. Unexpectedly high variability of the histone H4 gene in Leishmania. Parasitol. Res. 86: 259-261.
    • (2000) Parasitol. Res. , vol.86 , pp. 259-261
    • Lukes, J.1    Maslov, D.A.2
  • 19
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and J. S. Conery. 2000. The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 21
    • 0036148050 scopus 로고    scopus 로고
    • Evolution of eukaryotic translation elongation and termination factors: Variations of evolutionary rate and genetic code deviations
    • Moreira, D., S. Kervestin, O. Jean-Jean, and H. Philippe. 2002. Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations. Mol. Biol. Evol. 19:189-200.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 189-200
    • Moreira, D.1    Kervestin, S.2    Jean-Jean, O.3    Philippe, H.4
  • 22
    • 0033000133 scopus 로고    scopus 로고
    • Unusually high evolutionary rate of the elongation factor 1a genes from the ciliorphora and its impact on the phylogeny of eukaryotes
    • Moreira, D., H. Le Guyader, and H. Philippe. 1999. Unusually high evolutionary rate of the elongation factor 1a genes from the ciliorphora and its impact on the phylogeny of eukaryotes. Mol. Biol. Evol. 16:234-245.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 234-245
    • Moreira, D.1    Le Guyader, H.2    Philippe, H.3
  • 23
    • 0030054305 scopus 로고    scopus 로고
    • Estimating synonymous and nonsynonymous substitution rates
    • Muse, S. V. 1996. Estimating synonymous and nonsynonymous substitution rates. Mol. Biol. Evol. 13:105-114.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 105-114
    • Muse, S.V.1
  • 24
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome
    • Muse, S. V., and B. S. Gaut. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome. Mol. Biol. Evol. 11:715-724.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 26
    • 0036094816 scopus 로고    scopus 로고
    • Purifying selection and birth-and-death evolution in the histone H4 gene family
    • Piontkivska, H., A. P. Rooney, and M. Nei. 2002. Purifying selection and birth-and-death evolution in the histone H4 gene family. Mol. Biol. Evol. 19:689-697.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 689-697
    • Piontkivska, H.1    Rooney, A.P.2    Nei, M.3
  • 27
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D., and K. Crandall. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.2
  • 28
    • 0028231010 scopus 로고
    • The DNA of ciliated protozoa
    • Prescott, D. M. 1994. The DNA of ciliated protozoa. Microbiol. Rev. 58:233-267.
    • (1994) Microbiol. Rev. , vol.58 , pp. 233-267
    • Prescott, D.M.1
  • 30
    • 0034916154 scopus 로고    scopus 로고
    • Widespread distribution of extensive genome fragmentation in ciliates
    • Riley, J. L., and L. A. Katz. 2001. Widespread distribution of extensive genome fragmentation in ciliates. Mol. Biol. Evol. 18:1372-1377.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1372-1377
    • Riley, J.L.1    Katz, L.A.2
  • 31
    • 0026513925 scopus 로고
    • Phylogenetic relationships and unusual diversity in histone H4 proteins within the Tetrahymena pyriformis complex
    • Sadler, L. A., and C. F. Brunk. 1992. Phylogenetic relationships and unusual diversity in histone H4 proteins within the Tetrahymena pyriformis complex. Mol. Biol. Evol. 9:70-84.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 70-84
    • Sadler, L.A.1    Brunk, C.F.2
  • 32
    • 0030981831 scopus 로고    scopus 로고
    • H4 Histone in the macronucleus of Blepharisma japonicum (Protozoa, Ciolophora, Heterotrichida)
    • Salvini, M., Bini, E., Santucci, A., and R. Batistoni. 1997. H4 Histone in the macronucleus of Blepharisma japonicum (Protozoa, Ciolophora, Heterotrichida). FEMS Microbiol. Lett. 149:93-98.
    • (1997) FEMS Microbiol. Lett. , vol.149 , pp. 93-98
    • Salvini, M.1    Bini, E.2    Santucci, A.3    Batistoni, R.4
  • 33
    • 0029138866 scopus 로고
    • Characterization of low and high molecular weight DNA in the macronucleus of the ciliate Chilodonella steini
    • Steinbrück, G., S. Raszikowski, M. Golembiewska-Skoczylas, and B. Sapetto-Rebow. 1995. Characterization of low and high molecular weight DNA in the macronucleus of the ciliate Chilodonella steini. Acta Protozool. 34:125-134.
    • (1995) Acta Protozool. , vol.34 , pp. 125-134
    • Steinbrück, G.1    Raszikowski, S.2    Golembiewska-Skoczylas, M.3    Sapetto-Rebow, B.4
  • 34
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum likelihood method for reconnecting tree topologies
    • Strimmer, K., and A. von Haeseler. 1996. Quartet puzzling: A quartet maximum likelihood method for reconnecting tree topologies. Mol. Biol. Evol. 13:964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 36
    • 0027968068 scopus 로고
    • Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 0024550346 scopus 로고
    • A comprehensive compilation and alignment of histones and histone genes
    • Wells, D., and C. McBride. 1989. A comprehensive compilation and alignment of histones and histone genes. Nucleic Acids Res. 17:R311-R346.
    • (1989) Nucleic Acids Res. , vol.17
    • Wells, D.1    McBride, C.2
  • 38
    • 0033080794 scopus 로고    scopus 로고
    • Chromatin disruption and modification
    • Wolffe, A. P., and J. J. Hayes. 1999. Chromatin disruption and modification. Nucleic Acids Res. 27:711-720.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 711-720
    • Wolffe, A.P.1    Hayes, J.J.2
  • 39
    • 0031407579 scopus 로고    scopus 로고
    • Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: Crown eukaryotes date back to the paleoprotoerozoic
    • Wright, A.-D. G., and D. H. Lynn. 1997. Maximum ages of ciliate lineages estimated using a small subunit rRNA molecular clock: crown eukaryotes date back to the paleoprotoerozoic. Arch. Protistenkd. 148:329-341.
    • (1997) Arch. Protistenkd. , vol.148 , pp. 329-341
    • Wright, A.-D.G.1    Lynn, D.H.2
  • 41
    • 85158020247 scopus 로고    scopus 로고
    • Genome-wide rearrangements of DNA in ciliates
    • N. L. Craig, R. Craigie, M. Gellert, and A. Lambowitz, eds. ASM Press, Washington D.C.
    • Yao, M. C., S. Duharcourt, and D. L. Chalker. 2002. Genome-wide rearrangements of DNA in ciliates. Pp. 730-758 in N. L. Craig, R. Craigie, M. Gellert, and A. Lambowitz, eds. Mobile DNA II. ASM Press, Washington D.C.
    • (2002) Mobile DNA II , pp. 730-758
    • Yao, M.C.1    Duharcourt, S.2    Chalker, D.L.3
  • 42
    • 0033921902 scopus 로고    scopus 로고
    • Rates of conservative and radical nonsynonymous nucleotide subsitutions in mammalian nuclear genes
    • Zhang, J. 2000. Rates of conservative and radical nonsynonymous nucleotide subsitutions in mammalian nuclear genes. J. Mol. Evol. 50:56-68.
    • (2000) J. Mol. Evol. , vol.50 , pp. 56-68
    • Zhang, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.