메뉴 건너뛰기




Volumn 405, Issue 1, 2011, Pages 33-42

Fab′-induced folding of antigenic N-terminal peptides from intrinsically disordered HIV-1 Tat revealed by X-ray crystallography

Author keywords

crystal structure; Fab ; HIV 1 Tat; induced folding; intrinsically disordered protein

Indexed keywords

IMMUNOGLOBULIN F(AB) FRAGMENT; MONOCLONAL ANTIBODY; PHENYLALANINE; TRANSACTIVATOR PROTEIN; TRYPTOPHAN; EPITOPE; HUMAN IMMUNODEFICIENCY VIRUS ANTIBODY; VIRUS ANTIGEN;

EID: 78650414170     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2010.10.033     Document Type: Article
Times cited : (14)

References (49)
  • 1
    • 73149083473 scopus 로고    scopus 로고
    • Functions of Tat: The versatile protein of human immunodeficiency virus type 1
    • Romani B., Engelbrecht S., and Glashoff R.H. Functions of Tat: the versatile protein of human immunodeficiency virus type 1 J. Gen. Virol. 91 2010 1 12
    • (2010) J. Gen. Virol. , vol.91 , pp. 1-12
    • Romani, B.1    Engelbrecht, S.2    Glashoff, R.H.3
  • 2
    • 0242300120 scopus 로고    scopus 로고
    • The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA
    • Zhou M., Deng L., Kashanchi F., Brady J.N., Shatkin A.J., and Kumar A. The Tat/TAR-dependent phosphorylation of RNA polymerase II C-terminal domain stimulates cotranscriptional capping of HIV-1 mRNA Proc. Natl Acad. Sci. USA 100 2003 12666 12671
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 12666-12671
    • Zhou, M.1    Deng, L.2    Kashanchi, F.3    Brady, J.N.4    Shatkin, A.J.5    Kumar, A.6
  • 3
    • 0030862924 scopus 로고    scopus 로고
    • HIV-1 Tat protein exits from cells via a leaderless secretory pathway and binds to extracellular matrix-associated heparan sulfate proteoglycans through its basic region
    • Chang H.C., Samaniego F., Nair B.C., Buonaguro L., and Ensoli B. HIV-1 Tat protein exits from cells via a leaderless secretory pathway and binds to extracellular matrix-associated heparan sulfate proteoglycans through its basic region AIDS 11 1997 1421 1431
    • (1997) AIDS , vol.11 , pp. 1421-1431
    • Chang, H.C.1    Samaniego, F.2    Nair, B.C.3    Buonaguro, L.4    Ensoli, B.5
  • 4
    • 18144371652 scopus 로고    scopus 로고
    • HIV-1 Tat, apoptosis and the mitochondria: A tubulin link?
    • Giacca M. HIV-1 Tat, apoptosis and the mitochondria: a tubulin link? Retrovirology 2 2005 7
    • (2005) Retrovirology , vol.2 , pp. 7
    • Giacca, M.1
  • 5
    • 40449085163 scopus 로고    scopus 로고
    • HIV-1 Tat suppresses gp120-specific T cell response in IL-10-dependent manner
    • Gupta S., Boppana R., Mishra G.C., Saha B., and Mitra D. HIV-1 Tat suppresses gp120-specific T cell response in IL-10-dependent manner J. Immunol. 180 2008 79 88
    • (2008) J. Immunol. , vol.180 , pp. 79-88
    • Gupta, S.1    Boppana, R.2    Mishra, G.C.3    Saha, B.4    Mitra, D.5
  • 6
    • 3242808216 scopus 로고    scopus 로고
    • HIV-1 Tat enhances Kaposi sarcoma-associated herpesvirus (KSHV) infectivity
    • Aoki Y., and Tosato G. HIV-1 Tat enhances Kaposi sarcoma-associated herpesvirus (KSHV) infectivity Blood 104 2004 810 814
    • (2004) Blood , vol.104 , pp. 810-814
    • Aoki, Y.1    Tosato, G.2
  • 7
    • 73949092256 scopus 로고    scopus 로고
    • A universal anti-HIV-1 Tat epitope vaccine that is fully synthetic and self-adjuvanting
    • Goldstein G., and Chicca J.J. II A universal anti-HIV-1 Tat epitope vaccine that is fully synthetic and self-adjuvanting Vaccine 28 2010 1008 1014
    • (2010) Vaccine , vol.28 , pp. 1008-1014
    • Goldstein, G.1    Chicca, J.J.I.I.2
  • 8
    • 0024591269 scopus 로고
    • Multiple functional domains of Tat, the trans-activator of HIV-1, defined by mutational analysis
    • Kuppuswamy M., Subramanian T., Srinivasan A., and Chinnadurai G. Multiple functional domains of Tat, the trans-activator of HIV-1, defined by mutational analysis Nucleic Acids Res. 17 1989 3551 3561
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3551-3561
    • Kuppuswamy, M.1    Subramanian, T.2    Srinivasan, A.3    Chinnadurai, G.4
  • 9
    • 0038531163 scopus 로고    scopus 로고
    • Different modes of dipeptidyl peptidase IV (CD26) inhibition by oligopeptides derived from the N-terminus of HIV-1 Tat indicate at least two inhibitor binding sites
    • Lorey S., Stockel-Maschek A., Faust J., Brandt W., Stiebitz B., and Gorrell M.D. Different modes of dipeptidyl peptidase IV (CD26) inhibition by oligopeptides derived from the N-terminus of HIV-1 Tat indicate at least two inhibitor binding sites Eur. J. Biochem. 270 2003 2147 2156
    • (2003) Eur. J. Biochem. , vol.270 , pp. 2147-2156
    • Lorey, S.1    Stockel-Maschek, A.2    Faust, J.3    Brandt, W.4    Stiebitz, B.5    Gorrell, M.D.6
  • 10
    • 0028223435 scopus 로고
    • Human immunodeficiency virus 1 Tat binds to dipeptidyl aminopeptidase IV (CD26): A possible mechanism for Tat's immunosuppressive activity
    • Gutheil W.G., Subramanyam M., Flentke G.R., Sanford D.G., Munoz E., Huber B.T., and Bachovchin W.W. Human immunodeficiency virus 1 Tat binds to dipeptidyl aminopeptidase IV (CD26): a possible mechanism for Tat's immunosuppressive activity Proc. Natl Acad. Sci. USA 91 1994 6594 6598
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6594-6598
    • Gutheil, W.G.1    Subramanyam, M.2    Flentke, G.R.3    Sanford, D.G.4    Munoz, E.5    Huber, B.T.6    Bachovchin, W.W.7
  • 12
    • 0032450548 scopus 로고    scopus 로고
    • HIV-1 Tat interacts with cyclin T1 to direct the p-TEFb CTD kinase complex to TAR RNA
    • Garber M.E., Wei P., and Jones K.A. HIV-1 Tat interacts with cyclin T1 to direct the p-TEFb CTD kinase complex to TAR RNA Cold Spring Harb. Symp. Quant. Biol. 63 1998 371 380
    • (1998) Cold Spring Harb. Symp. Quant. Biol. , vol.63 , pp. 371-380
    • Garber, M.E.1    Wei, P.2    Jones, K.A.3
  • 13
    • 0025168740 scopus 로고
    • Fragments of the HIV-1 Tat protein specifically bind TAR RNA
    • Weeks K.M., Ampe C., Schultz S.C., Steitz T.A., and Crothers D.M. Fragments of the HIV-1 Tat protein specifically bind TAR RNA Science 249 1990 1281 1285
    • (1990) Science , vol.249 , pp. 1281-1285
    • Weeks, K.M.1    Ampe, C.2    Schultz, S.C.3    Steitz, T.A.4    Crothers, D.M.5
  • 14
    • 57149121459 scopus 로고    scopus 로고
    • Structural insights into the cyclin T1-Tat-TAR RNA transcription activation complex from EIAV
    • Anand K., Schulte A., Vogel-Bachmayr K., Scheffzek K., and Geyer M. Structural insights into the cyclin T1-Tat-TAR RNA transcription activation complex from EIAV Nat. Struct. Mol. Biol. 15 2008 1287 1292
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1287-1292
    • Anand, K.1    Schulte, A.2    Vogel-Bachmayr, K.3    Scheffzek, K.4    Geyer, M.5
  • 15
    • 0024494215 scopus 로고
    • Structural and functional characterization of human immunodeficiency virus tat protein
    • Ruben S., Perkins A., Purcell R., Joung K., Sia R., and Burghoff R. Structural and functional characterization of human immunodeficiency virus tat protein J. Virol. 63 1989 1 8
    • (1989) J. Virol. , vol.63 , pp. 1-8
    • Ruben, S.1    Perkins, A.2    Purcell, R.3    Joung, K.4    Sia, R.5    Burghoff, R.6
  • 16
    • 0030904245 scopus 로고    scopus 로고
    • A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus
    • Vives E., Brodin P., and Lebleu B. A truncated HIV-1 Tat protein basic domain rapidly translocates through the plasma membrane and accumulates in the cell nucleus J. Biol. Chem. 272 1997 16010 16017
    • (1997) J. Biol. Chem. , vol.272 , pp. 16010-16017
    • Vives, E.1    Brodin, P.2    Lebleu, B.3
  • 17
    • 0027220944 scopus 로고
    • The Tat protein of human immunodeficiency virus type 1, a growth factor for AIDS Kaposi sarcoma and cytokine-activated vascular cells, induces adhesion of the same cell types by using integrin receptors recognizing the RGD amino acid sequence
    • Barillari G., Gendelman R., Gallo R.C., and Ensoli B. The Tat protein of human immunodeficiency virus type 1, a growth factor for AIDS Kaposi sarcoma and cytokine-activated vascular cells, induces adhesion of the same cell types by using integrin receptors recognizing the RGD amino acid sequence Proc. Natl Acad. Sci. USA 90 1993 7941 7945
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 7941-7945
    • Barillari, G.1    Gendelman, R.2    Gallo, R.C.3    Ensoli, B.4
  • 18
    • 77953715510 scopus 로고    scopus 로고
    • Modifications in host cell cytoskeleton structure and function mediated by intracellular HIV-1 Tat protein are greatly dependent on the second coding exon
    • Lopez-Huertas M.R., Callejas S., Abia D., Mateos E., Dopazo A., Alcami J., and Coiras M. Modifications in host cell cytoskeleton structure and function mediated by intracellular HIV-1 Tat protein are greatly dependent on the second coding exon Nucleic Acids Res. 38 2010 3287 3307
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3287-3307
    • Lopez-Huertas, M.R.1    Callejas, S.2    Abia, D.3    Mateos, E.4    Dopazo, A.5    Alcami, J.6    Coiras, M.7
  • 21
    • 0034765711 scopus 로고    scopus 로고
    • Homonuclear (1)H-NMR assignment and structural characterization of human immunodeficiency virus type 1 Tat Mal protein
    • Gregoire C., Peloponese J.M. Jr., Esquieu D., Opi S., Campbell G., and Solomiac M. Homonuclear (1)H-NMR assignment and structural characterization of human immunodeficiency virus type 1 Tat Mal protein Biopolymers 62 2001 324 335
    • (2001) Biopolymers , vol.62 , pp. 324-335
    • Gregoire, C.1    Peloponese Jr., J.M.2    Esquieu, D.3    Opi, S.4    Campbell, G.5    Solomiac, M.6
  • 23
    • 77951221951 scopus 로고    scopus 로고
    • UV and X-ray structural studies of a 101-residue long Tat protein from a HIV-1 primary isolate and of its mutated, detoxified, vaccine candidate
    • Foucault M., Mayol K., Receveur-Brechot V., Bussat M.C., Klinguer-Hamour C., and Verrier B. UV and X-ray structural studies of a 101-residue long Tat protein from a HIV-1 primary isolate and of its mutated, detoxified, vaccine candidate Proteins 78 2010 1441 1456
    • (2010) Proteins , vol.78 , pp. 1441-1456
    • Foucault, M.1    Mayol, K.2    Receveur-Brechot, V.3    Bussat, M.C.4    Klinguer-Hamour, C.5    Verrier, B.6
  • 24
    • 33646835410 scopus 로고    scopus 로고
    • HIV-1 Tat is a natively unfolded protein: The solution conformation and dynamics of reduced HIV-1 Tat-(1-72) by NMR spectroscopy
    • Shojania S., and O'Neil J.D. HIV-1 Tat is a natively unfolded protein: the solution conformation and dynamics of reduced HIV-1 Tat-(1-72) by NMR spectroscopy J. Biol. Chem. 281 2006 8347 8356
    • (2006) J. Biol. Chem. , vol.281 , pp. 8347-8356
    • Shojania, S.1    O'Neil, J.D.2
  • 25
    • 0026640859 scopus 로고
    • Phenotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: Evidence for in vivo recombination and determinants of cytotropism outside the V3 domain
    • Groenink M., Andeweg A.C., Fouchier R.A., Broersen S., van der Jagt R.C., and Schuitemaker H. Phenotype-associated env gene variation among eight related human immunodeficiency virus type 1 clones: evidence for in vivo recombination and determinants of cytotropism outside the V3 domain J. Virol. 66 1992 6175 6180
    • (1992) J. Virol. , vol.66 , pp. 6175-6180
    • Groenink, M.1    Andeweg, A.C.2    Fouchier, R.A.3    Broersen, S.4    Van Der Jagt, R.C.5    Schuitemaker, H.6
  • 26
    • 0043123208 scopus 로고    scopus 로고
    • ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins
    • Gouet P., Robert X., and Courcelle E. ESPript/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins Nucleic Acids Res. 31 2003 3320 3323
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3320-3323
    • Gouet, P.1    Robert, X.2    Courcelle, E.3
  • 27
    • 0021964141 scopus 로고
    • Measurements of the true affinity constant in solution of antigen-antibody complexes by enzyme-linked immunosorbent assay
    • Friguet B., Chaffotte A.F., Djavadi-Ohaniance L., and Goldberg M.E. Measurements of the true affinity constant in solution of antigen-antibody complexes by enzyme-linked immunosorbent assay J. Immunol. Methods 77 1985 305 319
    • (1985) J. Immunol. Methods , vol.77 , pp. 305-319
    • Friguet, B.1    Chaffotte, A.F.2    Djavadi-Ohaniance, L.3    Goldberg, M.E.4
  • 28
    • 0014828908 scopus 로고
    • An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity
    • Wu T.T., and Kabat E.A. An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity J. Exp. Med. 132 1970 211 250
    • (1970) J. Exp. Med. , vol.132 , pp. 211-250
    • Wu, T.T.1    Kabat, E.A.2
  • 29
    • 48049124972 scopus 로고    scopus 로고
    • Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains
    • Abhinandan K.R., and Martin A.C. Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains Mol. Immunol. 45 2008 3832 3839
    • (2008) Mol. Immunol. , vol.45 , pp. 3832-3839
    • Abhinandan, K.R.1    Martin, A.C.2
  • 30
    • 0027971497 scopus 로고
    • Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1
    • Braden B.C., Souchon H., Eisele J.L., Bentley G.A., Bhat T.N., Navaza J., and Poljak R.J. Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1 J. Mol. Biol. 243 1994 767 781
    • (1994) J. Mol. Biol. , vol.243 , pp. 767-781
    • Braden, B.C.1    Souchon, H.2    Eisele, J.L.3    Bentley, G.A.4    Bhat, T.N.5    Navaza, J.6    Poljak, R.J.7
  • 32
    • 0026319199 scopus 로고
    • Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls A., Sharp K.A., and Honig B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons Proteins 11 1991 281 296
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 33
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants J. Appl. Crystallogr. 26 1993 795 800
    • (1993) J. Appl. Crystallogr. , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 34
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza J. AMoRe: an automated package for molecular replacement Acta Crystallogr. Sect. A. 50 1994 157 163
    • (1994) Acta Crystallogr. Sect. A. , vol.50 , pp. 157-163
    • Navaza, J.1
  • 35
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley P., and Cowtan K. Coot: model-building tools for molecular graphics Acta Crystallogr. Sect. D 60 2004 2126 2132
    • (2004) Acta Crystallogr. Sect. D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 36
    • 0028103275 scopus 로고
    • The CCP4 suite: Programs for protein crystallography
    • Project C.C.C. The CCP4 suite: programs for protein crystallography Acta Crystallogr. Sect. D 50 1994 760 763
    • (1994) Acta Crystallogr. Sect. D , vol.50 , pp. 760-763
    • Project, C.C.C.1
  • 37
    • 0030039296 scopus 로고    scopus 로고
    • PROMOTIF - A program to identify and analyze structural motifs in proteins
    • Hutchinson E.G., and Thornton J.M. PROMOTIF-a program to identify and analyze structural motifs in proteins Protein Sci. 5 1996 212 220
    • (1996) Protein Sci. , vol.5 , pp. 212-220
    • Hutchinson, E.G.1    Thornton, J.M.2
  • 38
    • 0024095588 scopus 로고
    • Functional domains required for tat-induced transcriptional activation of the HIV-1 long terminal repeat
    • Garcia J.A., Harrich D., Pearson L., Mitsuyasu R., and Gaynor R.B. Functional domains required for tat-induced transcriptional activation of the HIV-1 long terminal repeat EMBO J. 7 1988 3143 3147
    • (1988) EMBO J. , vol.7 , pp. 3143-3147
    • Garcia, J.A.1    Harrich, D.2    Pearson, L.3    Mitsuyasu, R.4    Gaynor, R.B.5
  • 39
    • 0025223467 scopus 로고
    • Structural analysis of wild-type and mutant human immunodeficiency virus type 1 Tat proteins
    • Rice A.P., and Carlotti F. Structural analysis of wild-type and mutant human immunodeficiency virus type 1 Tat proteins J. Virol. 64 1990 6018 6026
    • (1990) J. Virol. , vol.64 , pp. 6018-6026
    • Rice, A.P.1    Carlotti, F.2
  • 40
    • 0024753237 scopus 로고
    • The acidic amino-terminal region of the HIV-1 Tat protein constitutes an essential activating domain
    • Rappaport J., Lee S.J., Khalili K., and Wong-Staal F. The acidic amino-terminal region of the HIV-1 Tat protein constitutes an essential activating domain New Biol. 1 1989 101 110
    • (1989) New Biol. , vol.1 , pp. 101-110
    • Rappaport, J.1    Lee, S.J.2    Khalili, K.3    Wong-Staal, F.4
  • 41
    • 0026723116 scopus 로고
    • Functional analysis of the N-terminal domain of Tat protein of the human immunodeficiency virus type 1
    • Reddy M.V., Desai M., Jeyapaul J., Prasad D.D., Seshamma T., Palmeri D., and Khan S.A. Functional analysis of the N-terminal domain of Tat protein of the human immunodeficiency virus type 1 Oncogene 7 1992 1743 1748
    • (1992) Oncogene , vol.7 , pp. 1743-1748
    • Reddy, M.V.1    Desai, M.2    Jeyapaul, J.3    Prasad, D.D.4    Seshamma, T.5    Palmeri, D.6    Khan, S.A.7
  • 44
    • 70350309664 scopus 로고    scopus 로고
    • Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: Vaccine design implications
    • Bryson S., Julien J.P., Hynes R.C., and Pai E.F. Crystallographic definition of the epitope promiscuity of the broadly neutralizing anti-human immunodeficiency virus type 1 antibody 2F5: vaccine design implications J. Virol. 83 2009 11862 11875
    • (2009) J. Virol. , vol.83 , pp. 11862-11875
    • Bryson, S.1    Julien, J.P.2    Hynes, R.C.3    Pai, E.F.4
  • 45
    • 0242331318 scopus 로고    scopus 로고
    • Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop
    • Stanfield R.L., Ghiara J.B., Ollmann Saphire E., Profy A.T., and Wilson I.A. Recurring conformation of the human immunodeficiency virus type 1 gp120 V3 loop Virology 315 2003 159 173
    • (2003) Virology , vol.315 , pp. 159-173
    • Stanfield, R.L.1    Ghiara, J.B.2    Ollmann Saphire, E.3    Profy, A.T.4    Wilson, I.A.5
  • 46
    • 34547943482 scopus 로고    scopus 로고
    • Molecular principles of the interactions of disordered proteins
    • Meszaros B., Tompa P., Simon I., and Dosztanyi Z. Molecular principles of the interactions of disordered proteins J. Mol. Biol. 372 2007 549 561
    • (2007) J. Mol. Biol. , vol.372 , pp. 549-561
    • Meszaros, B.1    Tompa, P.2    Simon, I.3    Dosztanyi, Z.4
  • 48
    • 8644281176 scopus 로고    scopus 로고
    • Sequence variation within the dominant amino terminus epitope affects antibody binding and neutralization of human immunodeficiency virus type 1 Tat protein
    • Ruckwardt T.J., Tikhonov I., Berg S., Hatfield G.S., Chandra A., and Chandra P. Sequence variation within the dominant amino terminus epitope affects antibody binding and neutralization of human immunodeficiency virus type 1 Tat protein J. Virol. 78 2004 13190 13196
    • (2004) J. Virol. , vol.78 , pp. 13190-13196
    • Ruckwardt, T.J.1    Tikhonov, I.2    Berg, S.3    Hatfield, G.S.4    Chandra, A.5    Chandra, P.6
  • 49
    • 73349086222 scopus 로고    scopus 로고
    • HIV-1 Tat-based vaccines: An overview and perspectives in the field of HIV/AIDS vaccine development
    • Caputo A., Gavioli R., Bellino S., Longo O., Tripiciano A., and Francavilla V. HIV-1 Tat-based vaccines: an overview and perspectives in the field of HIV/AIDS vaccine development Int. Rev. Immunol. 28 2009 285 334
    • (2009) Int. Rev. Immunol. , vol.28 , pp. 285-334
    • Caputo, A.1    Gavioli, R.2    Bellino, S.3    Longo, O.4    Tripiciano, A.5    Francavilla, V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.