Shotgun proteomic profiling of five species of New Zealand Pachycladon

Proteomics

Volumn 11, Issue 1, 2011, Pages 166-171

  Mirzaei, Mehdi ^a   Pascovici, Dana ^a   Keighley, Tim ^a   George, Iniga ^a   Voelckel, Claudia ^b   Heenan, Peter B ^c   Haynes, Paul A ^a  

^a MACQUARIE UNIVERSITY   (Australia)

^b MASSEY UNIVERSITY   (New Zealand)

^c LANDCARE RESEARCH   (New Zealand)

Author keywords

Glucosinolate; Pachycladon; Plant proteomics; Quantitative shotgun proteomics; Spectral counting

Indexed keywords

GLUCOSINOLATE; NITRILE; THIOGLUCOSIDASE; VEGETABLE PROTEIN;

ARTICLE; GENE EXPRESSION PROFILING; NEW ZEALAND; NONHUMAN; PACHYCLADON; PLANT; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEOMICS; QUANTITATIVE ANALYSIS; SPECIES DIVERSITY;

BRASSICACEAE; NEW ZEALAND; PLANT PROTEINS; PROTEOMICS;

ARABIDOPSIS THALIANA; PACHYCLADON; PACHYCLADON CHEESEMANII; PACHYCLADON NOVAE-ZELANDIAE;

EID: 78650393973     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200900816     Document Type: Article

References (24)

1. Haynes, P. A., Roberts, T. H., Subcellular shotgun proteomics in plants: looking beyond the usual suspects. Proteomics 2007, 7, 2963-2975.
2. Zybailov, B., Mosley, A. L., Sardiu, M. E., Coleman, M. K. et al., Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J. Proteome Res. 2006, 5, 2339-2347.
3. Heenan, P. B., Mitchell, A. D., Koch, M., Molecular systematics of the New Zealand Pachycladon (Brassicaceae) complex: generic circumscription and relationships to Arabidopsis sens. lat. and Arabis sens. lat. NZ J. Bot. 2002, 40, 543-562.
4. Heenan, P. B., Mitchell, A. D., Phylogeny, biogeography and adaptive radiation of Pachycladon (Brassicaceae) in the mountains of South Island, New Zealand. J. Biogeogr. 2003, 30, 1737-1749.
5. Voelckel, C., Heenan, P. B., Janssen, B., Reichelt, M. et al., Transcriptional and biochemical signatures of divergence in natural populations of two species of New Zealand alpine Pachycladon. Mol. Ecol. 2008, 17, 4740-4753.
6. Voelckel, C., Mirzaei, M., Reichelt, M., Luo, L. et al., Transcript and protein profiling identify candidate gene sets of adaptive divergence in New Zealand Pachycladon. BMC Evol. Biol. 2009, 10, 151-159.
7. Lee, A., Kolarich, D., Haynes, P. A., Jensen, P. H. et al., Rat liver membrane glycoproteome: enrichment by phase partitioning and glycoprotein capture. J. Proteome Res. 2009, 8, 770-781.
8. Breci, L., Hattrup, E., Keeler, M., Letarte, J. et al., Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing. Proteomics 2005, 5, 2018-2028.
9. Miller, I., Haynes, P., Eberini, I., Gemeiner, M. et al., Proteins of rat serum: III. Gender-related differences in protein concentration under baseline conditions and upon experimental inflammation as evaluated by two-dimensional electrophoresis. Electrophoresis 1999, 20, 836-845.
10. Zhang, Y., Wen, Z., Washburn, M. P., Florens, L., Effect of dynamic exclusion duration on spectral count based quantitative proteomics. Anal. Chem. 2009, 81, 6317-6326.
11. Craig, R., Cortens, J. P., Beavis, R. C., Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 2004, 3, 1234-1242.
12. Chick, J. M., Haynes, P. A., Molloy, M. P., Bjellqvist, B. et al., Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing. J. Proteome Res. 2008, 7, 1036-1045.
13. Benjamini, Y., Hochberg, Y., Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Stat. Soc. 1995, 57, 289-300.
14. Chick, J. M., Haynes, P. A., Bjellqvist, B., Baker, M. S., A combination of immobilised pH gradients improves membrane proteomics. J. Proteome Res. 2008, 7, 4974-4981.
15. Kliebenstein, D. J., in: Osbourn, A. E., Lanzotti, V. (Eds.), Plant-Derived Natural Products, Springer, New York 2009, pp. 83-95.
16. Lambrix, V., Reichelt, M., Mitchell-Olds, T., Kliebenstein, D. J., Gershenzon, J., The Arabidopsis epithiospecifier protein promotes the hydrolysis of glucosinolates to nitriles and influences Trichoplusia in herbivory. Plant Cell 2001, 13, 2793-2807.
17. Zhang, Z., Ober, J. A., Kliebenstein, D. J., The gene controlling the quantitative trait locus Epithiospecifier Modifier 1 alters glucosinolate hydrolysis and insect resistance in Arabidopsis. Plant Cell 2006, 18, 1524-1536.
18. Yan, X., Chen, S., Regulation of plant glucosinolate metabolism. Planta 2007, 226, 1343-1352.
19. Textor, S., Gershenzon, J., Herbivore induction of the glucosinolate-myrosinase defense system: major trends, biochemical bases and ecological significance. Phytochem. Rev. 2009, 8, 149-170.
20. Aksouh, N., Jacobs, B., Stoddard, F., Mailer, R., Response of canola to different heat stresses. Aust. J. Agric. Res. 2001, 52, 817-824.
21. Eduardo, A. S. R., Paula, M. F. R., The effect of light and temperature on glucosinolate concentration in the leaves and roots of cabbage seedlings. J. Sci. Food Agric. 1998, 78, 208-212.
22. Riston, H., Lexi, S., Joy, W., Paul, B. et al., Evolution of drought tolerance and defense: dependence of tradeoffs on mechanism, environment and defense switching. Oikos 2008, 117, 231-244.
23. Schonhof, I., Kläring, H. P., Krumbein, A., Schreiner, M., Interaction between atmospheric CO2 and glucosinolates in Broccoli. J. Chem. Ecol. 2007, 33, 105-114.
24. Sun, X., Zhang, J., Zhang, H., Zhang, Q. et al., Glucosinolate profiles of Arabidopsis thaliana in response to cadmium exposure. Water Air Soil Pollut. 2009, 200, 109-117.