Molecular systematics of the New Zealand Pachycladon (Brassicaceae) complex: Generic circumscription and relationships to Arabidopsis sens. lat. and Arabis sens. lat.

New Zealand Journal of Botany

Volumn 40, Issue 4, 2002, Pages 543-562

  Heenan, P B ^a   Mitchell, A D ^b,c   Koch, M ^d  

^a LANDCARE RESEARCH   (New Zealand)

^b AGRESEARCH LTD   (New Zealand)

^c Museum of Natural History   (United States)

^d UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

Author keywords

Arabidopsis; Arabis; Brassicaceae; Cheesemania; Ischnocarpus; New Zealand flora; Pachycladon; Phylogeny

Indexed keywords

PHYLOGENETICS; PHYLOGENY; TAXONOMY;

NEW ZEALAND;

ARABIDOPSIS; ARABIS; BOECHERA; BRASSICACEAE; CHEESEMANIA; CRUCIHIMALAYA; EMBRYOPHYTA; ISCHNOCARPUS; ISCHNOCARPUS NOVAE-ZELANDIAE; OLIMARABIDOPSIS; PACHYCLADON; PSEUDOARABIDOPSIS; TURRITIS;

EID: 0036935573     PISSN: 0028825X     EISSN: 11758643     Source Type: Journal    
DOI: 10.1080/0028825X.2002.9512815     Document Type: Article

References (61)

1. Allan, H. H., 1961. Flora of New Zealand, Vol. I., Wellington:Government Printer.
2. Al-Shehbaz, I. A., 1988. The genera of Arabideae (Cruciferae; Brassicaceae) in the southeastern United States. Journal of the Arnold Arboretum, 69:85–106.
3. Al-Shehbaz, I. A., and O'Kane, S., 1995. Placement of Arabidopsis parvula in Thellungiella (Brassicaceae). Novon, 5:309–310.
4. Al-Shehbaz, I. A., and O'Kane, S., 1997. Arabidopsis gamosepala and A. tuemurnica belong to Neotorularia (Brassicaceae). Novon, 7:93–94.
5. Al-Shehbaz, I. A., O'Kane, S. L., and Price, R. A., 1999. Generic placement of species excluded from Arabidopsis. Novon, 9:296–307.
6. Bailey, C. D., and Doyle, J. J., 1999. Potential phylogenetic utility of the low-copy nuclear gene pistillata in dicotyledonous plants:Comparison to nrDNA ITS and trnL intron in Sphaerocardamum and other Brassicaceae. Molecular Phylogenetics and Evolution, 13:20–30.
7. Bailey, C. D., Price, R. A., and Doyle, J. J., 2002. Systematics of the halimolobine Brassicaceae:evidence from three loci and morphology. Systematic Botany, 27:318–332.
8. Batt, G. E., Braun, J., Kohn, B. P., and McDougall, I., 2000. Thermochronological analysis of the dynamics of the Southern Alps, New Zealand. Geological Society Association Bulletin, 112:250–266.
9. Bowman, J., 1993. Arabidopsis an atlas of morphology and development, New York:Springer-Verlag.
10. Bricker, J. S., Brown, G. K., and Lewis, T. L. P., 2000. Status of Descurainia torulosa (Brassicaceae). Western North American Naturalist, 60:426–432.
11. Buckler, E. S., Ippolito, A., and Holtsford, T. P., 1997. The evolution of ribosomal DNA:divergent paralogues and phylogenetic implications. Genetics, 145:821–832.
12. Chamberlain, C. P., and Poage, M. A., 2000. Reconstructing the paleotopography of mountain belts from the isotopic composition of authigenic minerals. Geology, 28:115–118.
13. Cheeseman, T. F., 1883. On some recent additions to the flora of New Zealand. Transactions and Proceedings of the New Zealand Institute, 15:298–301.
14. Cheeseman, T. F., 1925. Manual of the New Zealand flora, 2nd ed., Wellington:Government Printer.
15. Crespo, M. B., Lledo, M. D., Fay, M. F., and Chase, M. W., 2000. Subtribe Vellinae (Brassiceae, Brassicaceae):a combined analysis of ITS nrDNA sequences and morphological data. Annals of Botany, 86:53–62.
16. Felsenstein, J., 1985. Confidence limits on phylogenies:An approach using the bootstrap. Evolution, 39:783–791.
17. Francisco-Ortega, J., Fuertes-Aguilar, J., Gomez-Campo, C., Santos-Guerra, A., and Jansen, R. K., 1999. ITS sequence phylogeny of Crambe L. (Brassicaceae):molecular data reveal two Old World disjunctions. Molecular Phylogenetics and Evolution, 11:361–380.
18. Franzke, A., Pollmann, K., Bleeker, W., Kohrt, R., and Hurka, H., 1998. Molecular systematics of Cardamine and allied genera (Brassicaceae):ITS and non-coding chloroplast DNA. Folia Geobotanica, 33:225–240.
19. Garnock-Jones, P. J., 1987. Orthographic changes In:Connor, H. E.; Edgar, E. Name changes in the indigenous New Zealand flora, 1960–1986 and Nomina Nova IV, 1983–1986. New Zealand Journal of Botany, 25:115–170.
20. Garnock-Jones, P. J., 1991. Seed morphology and anatomy of the New Zealand genera Cheesemania, Ischnocarpus, Iti, Notothlaspi, and Pachycladon (Brassicaceae). New Zealand Journal of Botany, 29:71–82.
21. Heenan, P. B., 1999. Artificial intergeneric hybrids between the New Zealand endemic Ischnocarpus and Pachycladon (Brassicaceae). New Zealand Journal of Botany, 37:595–601.
22. Heenan, P. B., and Garnock-Jones, P. J., 1999. A new species combination in Cheesemania (Brassicaceae). New Zealand Journal of Botany, 37:235–241.
23. Hooker, J. D., 1855. The botany of the Antarctic voyage. II. Flora Novae-Zelandiae. Part II. Flowerless plants, London:Reeve.
24. Hooker, J. D., 1864. Handbook of the New Zealand flora, Part 1, London:Reeve.
25. Jacobson, D. J., Lefebvre, S. H., Ojerio, R. S., Berwald, N., and Heikkinen, E., 1998. Persistent, systemic, asymptomatic infections of Albugo candida, an oomycete parasite, detected in three wild crucifer species. Canadian Journal of Botany-Revue Canadienne de Botanique, 76:739–750.
26. Kirk, T., 1899. The students’ flora of New Zealand and outlying islands, Wellington:Government Printer.
27. Koch, M., and Al-Shehbaz, I. A., 2000. Molecular systematics of the Chinese Yinshania (Brassicaceae):evidence from plastid and nuclear ITS DNA sequence data. Annals of the Missouri Botanical Gardens, 87:246–272.
28. Koch, M., and Al-Shehbaz, I. A., 2001. Molecular data indicate complex intra- and intercontinental differentiation of American Draba (Brassicaceae). Annals of the Missouri Botanical Garden, 89:88–109.
29. Koch, M., and Mummenhoff, K., 2001. Thlaspi s.str. (Brassicaceae) versus Thlaspi s.l.:morphological and anatomical characters in the light of ITS nrDNA sequence data. Plant Systematics Evolution, 227:209–225.
30. Koch, M., Huthmann, M., and Hurka, H., 1998. Isozymes, speciation and evolution in the polyploid complex Cochlearia L. (Brassicaceae). Botanica Acta, 111:411–425.
31. Koch, M., Mummenhoff, K., and Hurka, H., 1999a. Molecular phylogenetics of Cochlearia L. and allied genera based on nuclear ribosomal ITS DNA sequence analysis contradict traditional concepts of their evolutionary relationships. Plant Systematics and Evolution, 216:207–230.
32. Koch, M., Bishop, J., and Mitchell-Olds, T., 1999b. Molecular systematics and evolution of Arabidopsis and Arabis. Plant Biology, 1:529–437.
33. Koch, M., Haubold, B., and Mitchell-Olds, T., 2000. Comparative evolutionary analysis of the chalcone synthase and alcohol dehydrogenase loci among different lineages of Arabidopsis, Arabis and related genera (Brassicaceae). Molecular Biology Evolution, 17:1483–1498.
34. Koch, M., Haubold, B., and Mitchell-Olds, T., 2001. Molecular systematics of the Brassicaceae:evidence from coding plastidic matK and nuclear chs sequences. American Journal of Botany, 88:534–544.
35. Löve, A., and Löve, D., 1976. Nomenclatural notes on Arctic plants. Botaniska Notiser, 128:497–523.
36. Maddison, W. P., and Maddison, D. R., 1992. MacClade vers. 3.1:Analysis of phylogeny and character evolution, Sunderland, Massachussetts:Sinauer.
37. Mayer, M. S., and Soltis, P. S., 1999. Intraspecific phylogeny analysis using ITS sequences:Insights from studies of the Streptanthus glandulosus complex (Cruciferae). Systematic Botany, 24:47–61.
38. Meyerowitz, E. M., and Somerville, C. R., 1994. Arabidopsis, New York:Cold Spring Harbor Laboratory Press.
39. Mitchell, A. D., and Heenan, P. B., 2000. Systematic relationships of New Zealand endemic Brassicaceae inferred from nrDNA ITS sequence data. Systematic Botany, 25:98–105.
40. Mitchell, A. D., and Heenan, P. B., 2002. Genetic variation within the Pachycladon (Brassicaceae) complex based on fluorescent AFLP data. Journal of the Royal Society of New Zealand, 32:427–443.
41. Molloy, B. J. P., Edgar, E., Heenan, P. B., and de Lange, P. J., 1999. New species of Poa (Poaceae) and Ischnocarpus (Brassicaceae) from limestone, North Otago, South Island, New Zealand. New Zealand Journal of Botany, 37:41–50.
42. Mummenhoff, K., Franzke, A., and Koch, M., 1997a. Molecular data reveal convergence in fruit characters used in the classification of Thlaspi s.l. (Brassicaceae). Botanical Journal of the Linnean Society, 125:183–199.
43. Mummenhoff, K., Franzke, A., and Koch, M., 1997b. Molecular phylogenetics of Thlaspi s.l. (Brassicaceae) based on chloroplast DNA restriction site variation and sequences of the internal transcribed spacers of nuclear ribosomal DNA. Canadian Journal of Botany, 75:469–482.
44. Mummenhoff, K., Brüggemann, H., and Coja, U., 2001. Pachyphragma and Gagria (Brassicaceae) revisited:molecular data indicate close relationship to Thlaspi s.str. Folia Geobotanica, 36:293–302.
45. O'Kane, S. L., and Al-Shehbaz, I. A., 1997. A synopsis of Arabidopsis (Brassicaceae). Novon, 7:323–327.
46. O'Kane, S., and Al-Shehbaz, I. A., 2002. Phylogenetic position and generic limits of Arabidopsis (Brassicaceae) based on sequences of nuclear ribosomal DNA. Systematic Botany
47. O'Kane, S., Schaal, B., and Al-Shehbaz, I. A., 1996. The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Systematic Botany, 21:559–566.
48. Page, R. D. M., 1996. TREEVIEW:An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12:357–358.
49. Philipson, W. R., 1957. A new species of Pachycladon. Transactions and Proceedings of the Royal Society of New Zealand, 84:497–498.
50. Posada, D., and Crandall, K. A., 1998. MODELTEST:testing the model of DNA substitution. Bioinformatics, 14:817–818.
51. Price, R. A., Palmer, J. D., and Al-Shehbaz, I. A., 1994. “Systematic relationships of Arabidopsis:a molecular and morphological perspective”. In Arabidopsis, Edited by:Meyerowitz, E. M., and Somerville, C. R., 7–19. New York:Cold Spring Harbor Laboratory Press.
52. Price, R. A., Al-Shehbaz, I. A., and O'Kane, S. L., 2001. Beringia (Brassicaceae), a new genus of Arabidopsoid affinities from Russia and North America. Novon, 11:332–336.
53. Roy, B., 2001. Patterns of association between crucifers and their flower mimic pathogens:host jumps are more common than coevolution or cospeciation. Evolution, 55:41–53.
54. Schulz, O. E., 1924. Cruciferae-Sisymbrieae. Das Pflanzenreich IV 105 (Heft 86),:1–388.
55. Schulz, O. E., 1936. “Cruciferen.”. In Die natürlichen Pflanzenfamilien 17b., 2nd ed., Edited by:Engler, A., and Harms, H., 227–658. Leipzig:Engelmann.
56. Sokal, R. R., and Rohlf, F. J., 1981. Taxonomic congruence in the Leptopodomorpha re-examined. Systematic Zoology, 30:309–325.
57. Swofford, D. L., 2000. PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Version 4, Sunderland, Massachusetts, USA:Sinauer.
58. Thompson, J. D., Higgins, D. G., and Gibson, T. J., 1994. CLUSTAL W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673–4680.
59. Widmer, A., and Baltisberger, M., 1999. Molecular evidence for allopolyploid speciation and a single origin of the narrow endemic Draba ladina (Brassicaceae). American Journal of Botany, 86:1282–1289.
60. Yang, W.-W., Lai, K.-N., Tai, P.-Y., Ma, D.-P., and Li, W.-H., 1999. Molecular phylogenetic studies of Brassica, Rorippa, Arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA. Molecular Phylogenetics and Evolution, 13:455–462.
61. Zunk, K., Mummenhoff, K., Koch, M., and Hurka, H., 1996. Phylogenetic relationships of Thlaspi s. l. (subtribe Thlaspidinae, Lepidieae) and allied genera based on chloroplast DNA restriction-site variation. Theoretical Applied Genetics, 92:375–381.