메뉴 건너뛰기




Volumn 79, Issue 1, 2011, Pages 149-165

Phenotypic repertoire of the FNR regulatory network in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; PROTEIN FNR; UNCLASSIFIED DRUG;

EID: 78650248379     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2010.07437.x     Document Type: Article
Times cited : (25)

References (31)
  • 1
    • 0029664739 scopus 로고    scopus 로고
    • 2 as the regulatory signal for FNR-dependent gene regulation in Escherichia coli
    • 2 as the regulatory signal for FNR-dependent gene regulation in Escherichia coli. J Bacteriol 178: 4515-4521.
    • (1996) J Bacteriol , vol.178 , pp. 4515-4521
    • Becker, S.1    Holighaus, G.2    Gabrielczyk, T.3    Unden, G.4
  • 2
    • 63549119474 scopus 로고    scopus 로고
    • Quantifying global tolerance of biochemical systems: design implications for moiety-transfer cycles
    • Coelho, P.M., Salvador, A., and Savageau, M.A. (2009) Quantifying global tolerance of biochemical systems: design implications for moiety-transfer cycles. PLoS Comput Biol 5: e1000319.
    • (2009) PLoS Comput Biol , vol.5
    • Coelho, P.M.1    Salvador, A.2    Savageau, M.A.3
  • 5
    • 33846659467 scopus 로고    scopus 로고
    • Transcription factor distribution in Escherichia coli: studies with FNR protein
    • Grainger, D.C., Aiba, H., Hurd, D., Browning, D.F., and Busby, S.J. (2007) Transcription factor distribution in Escherichia coli: studies with FNR protein. Nucleic Acids Res 35: 269-278.
    • (2007) Nucleic Acids Res , vol.35 , pp. 269-278
    • Grainger, D.C.1    Aiba, H.2    Hurd, D.3    Browning, D.F.4    Busby, S.J.5
  • 7
    • 13244289800 scopus 로고    scopus 로고
    • Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function
    • Kang, Y., Weber, K.D., Qiu, Y., Kiley, P.J., and Blattner, F.R. (2005) Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. J Bacteriol 187: 1135-1160.
    • (2005) J Bacteriol , vol.187 , pp. 1135-1160
    • Kang, Y.1    Weber, K.D.2    Qiu, Y.3    Kiley, P.J.4    Blattner, F.R.5
  • 9
    • 0017041998 scopus 로고
    • Mutants of Escherichia coli K12 unable to use fumarate as an anaerobic electron acceptor
    • Lambden, P.R., and Guest, J.R. (1976) Mutants of Escherichia coli K12 unable to use fumarate as an anaerobic electron acceptor. J Gen Microbiol 97: 145-160.
    • (1976) J Gen Microbiol , vol.97 , pp. 145-160
    • Lambden, P.R.1    Guest, J.R.2
  • 10
    • 0030029817 scopus 로고    scopus 로고
    • DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen
    • Lazazzera, B.A., Beinert, H., Khoroshilova, N., Kennedy, M.C., and Kiley, P.J. (1996) DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen. J Biol Chem 271: 2762-2768.
    • (1996) J Biol Chem , vol.271 , pp. 2762-2768
    • Lazazzera, B.A.1    Beinert, H.2    Khoroshilova, N.3    Kennedy, M.C.4    Kiley, P.J.5
  • 12
    • 34247857563 scopus 로고    scopus 로고
    • Contributions of [4Fe-4S]-FNR and integration host factor to fnr transcriptional regulation
    • Mettert, E.L., and Kiley, P.J. (2007) Contributions of [4Fe-4S]-FNR and integration host factor to fnr transcriptional regulation. J Bacteriol 189: 3036-3043.
    • (2007) J Bacteriol , vol.189 , pp. 3036-3043
    • Mettert, E.L.1    Kiley, P.J.2
  • 14
    • 0035824571 scopus 로고    scopus 로고
    • Characterization of the dimerization domain in the FNR transcription factor
    • Moore, L.J., and Kiley, P.J. (2001) Characterization of the dimerization domain in the FNR transcription factor. J Biol Chem 276: 45744-45750.
    • (2001) J Biol Chem , vol.276 , pp. 45744-45750
    • Moore, L.J.1    Kiley, P.J.2
  • 15
    • 33845927943 scopus 로고    scopus 로고
    • Regulation of FNR dimerization by subunit charge repulsion
    • Moore, L.J., Mettert, E.L., and Kiley, P.J. (2006) Regulation of FNR dimerization by subunit charge repulsion. J Biol Chem 281: 33268-33275.
    • (2006) J Biol Chem , vol.281 , pp. 33268-33275
    • Moore, L.J.1    Mettert, E.L.2    Kiley, P.J.3
  • 16
    • 34249110125 scopus 로고    scopus 로고
    • The Escherichia coli yhjA gene, encoding a predicted cytochrome c peroxidase, is regulated by FNR and OxyR
    • Partridge, J.D., Poole, R.K., and Green, J. (2007) The Escherichia coli yhjA gene, encoding a predicted cytochrome c peroxidase, is regulated by FNR and OxyR. Microbiology 153: 1499-1507.
    • (2007) Microbiology , vol.153 , pp. 1499-1507
    • Partridge, J.D.1    Poole, R.K.2    Green, J.3
  • 17
    • 0043032584 scopus 로고    scopus 로고
    • Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR
    • Salmon, K., Hung, S.P., Mekjian, K., Baldi, P., Hatfield, G.W., and Gunsalus, R.P. (2003) Global gene expression profiling in Escherichia coli K12. The effects of oxygen availability and FNR. J Biol Chem 278: 29837-29855.
    • (2003) J Biol Chem , vol.278 , pp. 29837-29855
    • Salmon, K.1    Hung, S.P.2    Mekjian, K.3    Baldi, P.4    Hatfield, G.W.5    Gunsalus, R.P.6
  • 18
    • 65549151303 scopus 로고    scopus 로고
    • Switching regulatory models of cellular stress response
    • Sanguinetti, G., Ruttor, A., Opper, M., and Archambeau, C. (2009) Switching regulatory models of cellular stress response. Bioinformatics 25: 1280-1286.
    • (2009) Bioinformatics , vol.25 , pp. 1280-1286
    • Sanguinetti, G.1    Ruttor, A.2    Opper, M.3    Archambeau, C.4
  • 19
    • 0015103748 scopus 로고
    • Concepts relating the behavior of biochemical systems to their underlying molecular properties
    • Savageau, M.A. (1971a) Concepts relating the behavior of biochemical systems to their underlying molecular properties. Arch Biochem Biophys 145: 612-621.
    • (1971) Arch Biochem Biophys , vol.145 , pp. 612-621
    • Savageau, M.A.1
  • 20
    • 0015231849 scopus 로고
    • Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems
    • Savageau, M.A. (1971b) Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems. Nature 229: 542-544.
    • (1971) Nature , vol.229 , pp. 542-544
    • Savageau, M.A.1
  • 21
    • 0031853923 scopus 로고    scopus 로고
    • Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways
    • Savageau, M.A. (1998) Development of fractal kinetic theory for enzyme-catalysed reactions and implications for the design of biochemical pathways. Biosystems 47: 9-36.
    • (1998) Biosystems , vol.47 , pp. 9-36
    • Savageau, M.A.1
  • 22
    • 0035578429 scopus 로고    scopus 로고
    • Design principles for elementary gene circuits: elements, methods, and examples
    • Savageau, M.A. (2001) Design principles for elementary gene circuits: elements, methods, and examples. Chaos 11: 142-159.
    • (2001) Chaos , vol.11 , pp. 142-159
    • Savageau, M.A.1
  • 23
    • 78650246762 scopus 로고    scopus 로고
    • Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology 40th Anniversary Issue, A reprinting of the original edition published by Addison-Wesley, Reading, MA, 1976].
    • Savageau, M.A. (2009) Biochemical Systems Analysis: A Study of Function and Design in Molecular Biology 40th Anniversary Issue, [A reprinting of the original edition published by Addison-Wesley, Reading, MA, 1976].
    • (2009)
    • Savageau, M.A.1
  • 24
    • 71149094663 scopus 로고    scopus 로고
    • Qualitatively distinct phenotypes in the design space of biochemical systems
    • Savageau, M.A., and Fasani, R.A. (2009) Qualitatively distinct phenotypes in the design space of biochemical systems. FEBS Lett 583: 3914-3922.
    • (2009) FEBS Lett , vol.583 , pp. 3914-3922
    • Savageau, M.A.1    Fasani, R.A.2
  • 26
    • 0035909963 scopus 로고    scopus 로고
    • IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins
    • Schwartz, C.J., Giel, J.L., Patschkowski, T., Luther, C., Ruzicka, F.J., Beinert, H., and Kiley, P.J. (2001) IscR, an Fe-S cluster-containing transcription factor, represses expression of Escherichia coli genes encoding Fe-S cluster assembly proteins. Proc Natl Acad Sci USA 98: 14895-14900.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 14895-14900
    • Schwartz, C.J.1    Giel, J.L.2    Patschkowski, T.3    Luther, C.4    Ruzicka, F.J.5    Beinert, H.6    Kiley, P.J.7
  • 29
    • 77950021681 scopus 로고    scopus 로고
    • Regulation of aerobic-to-anaerobic transitions by the FNR cycle in Escherichia coli
    • Tolla, D.A., and Savageau, M.A. (2010) Regulation of aerobic-to-anaerobic transitions by the FNR cycle in Escherichia coli. J Mol Biol 397: 893-905.
    • (2010) J Mol Biol , vol.397 , pp. 893-905
    • Tolla, D.A.1    Savageau, M.A.2
  • 30
    • 0030067649 scopus 로고    scopus 로고
    • Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli
    • Tseng, C.P., Albrecht, J., and Gunsalus, R.P. (1996) Effect of microaerophilic cell growth conditions on expression of the aerobic (cyoABCDE and cydAB) and anaerobic (narGHJI, frdABCD, and dmsABC) respiratory pathway genes in Escherichia coli. J Bacteriol 178: 1094-1098.
    • (1996) J Bacteriol , vol.178 , pp. 1094-1098
    • Tseng, C.P.1    Albrecht, J.2    Gunsalus, R.P.3
  • 31
    • 0023103380 scopus 로고
    • On the role of cyclic AMP and the Fnr protein in Escherichia coli growing anaerobically
    • Unden, G., and Duchene, A. (1987) On the role of cyclic AMP and the Fnr protein in Escherichia coli growing anaerobically. Arch Microbiol 147: 195-200.
    • (1987) Arch Microbiol , vol.147 , pp. 195-200
    • Unden, G.1    Duchene, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.