-
1
-
-
0001947282
-
The FNR modulon and FNR-regulated gene expression
-
E.C.C. Lin A.S. Lynch Landes Company Austin, TX
-
J.R. Guest, J. Green, A.S. Irvine, and S. Spiro The FNR modulon and FNR-regulated gene expression E.C.C. Lin A.S. Lynch Regulation of Gene Expression in Escherichia coli 1996 Landes Company Austin, TX 317 342
-
(1996)
Regulation of Gene Expression in Escherichia Coli
, pp. 317-342
-
-
Guest, J.R.1
Green, J.2
Irvine, A.S.3
Spiro, S.4
-
2
-
-
0001877017
-
Mechanisms for sensing and responding to oxygen deprivation
-
G. Storz R. Hengge-Aronis ASM Press Washington, DC
-
T. Patschkowski, D.M. Bates, and P.J. Kiley Mechanisms for sensing and responding to oxygen deprivation G. Storz R. Hengge-Aronis Bacterial Stress Responses 2000 ASM Press Washington, DC 61 78
-
(2000)
Bacterial Stress Responses
, pp. 61-78
-
-
Patschkowski, T.1
Bates, D.M.2
Kiley, P.J.3
-
4
-
-
13244289800
-
Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function
-
Y. Kang, K.D. Weber, Y. Qiu, P.J. Kiley, and F.R. Blattner Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function J. Bacteriol. 187 2005 1135 1160
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1135-1160
-
-
Kang, Y.1
Weber, K.D.2
Qiu, Y.3
Kiley, P.J.4
Blattner, F.R.5
-
5
-
-
0043032584
-
Global gene expression profiling in Escherichia coli K12
-
K. Salmon, S.P. Hung, K. Mekjian, P. Baldi, G.W. Hatfield, and R.P. Gunsalus Global gene expression profiling in Escherichia coli K12 J. Biol. Chem. 278 2003 29837 29855
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 29837-29855
-
-
Salmon, K.1
Hung, S.P.2
Mekjian, K.3
Baldi, P.4
Hatfield, G.W.5
Gunsalus, R.P.6
-
7
-
-
0029797082
-
Reconstitution of the [4Fe-4S] cluster in FNR and demonstration of the aerobic-anaerobic transcription switch in vitro
-
J. Green, B. Bennett, P. Jordan, E.T. Ralph, A.J. Thomson, and J.R. Guest Reconstitution of the [4Fe-4S] cluster in FNR and demonstration of the aerobic-anaerobic transcription switch in vitro Biochem. J. 316 1996 887 892
-
(1996)
Biochem. J.
, vol.316
, pp. 887-892
-
-
Green, J.1
Bennett, B.2
Jordan, P.3
Ralph, E.T.4
Thomson, A.J.5
Guest, J.R.6
-
8
-
-
0030695304
-
FNR is a direct oxygen sensor having a biphasic response curve
-
P.A. Jordan, A.J. Thomson, E.T. Ralph, J.R. Guest, and J. Green FNR is a direct oxygen sensor having a biphasic response curve FEBS Letters 416 1997 349 352
-
(1997)
FEBS Letters
, vol.416
, pp. 349-352
-
-
Jordan, P.A.1
Thomson, A.J.2
Ralph, E.T.3
Guest, J.R.4
Green, J.5
-
9
-
-
0030029817
-
DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen
-
B.A. Lazazzera, H. Beinert, N. Khoroshilova, M.C. Kennedy, and P.J. Kiley DNA binding and dimerization of the Fe-S-containing FNR protein from Escherichia coli are regulated by oxygen J. Biol. Chem. 271 1996 2762 2768
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 2762-2768
-
-
Lazazzera, B.A.1
Beinert, H.2
Khoroshilova, N.3
Kennedy, M.C.4
Kiley, P.J.5
-
11
-
-
0033639260
-
FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3
-
K.E. Lamberg, and P.J. Kiley FNR-dependent activation of the class II dmsA and narG promoters of Escherichia coli requires FNR-activating regions 1 and 3 Mol. Microbiol. 38 2000 817 827
-
(2000)
Mol. Microbiol.
, vol.38
, pp. 817-827
-
-
Lamberg, K.E.1
Kiley, P.J.2
-
12
-
-
0036301095
-
Characterization of activating region 3 from Escherichia coli FNR
-
K.E. Lamberg, C. Luther, K.D. Weber, and P.J. Kiley Characterization of activating region 3 from Escherichia coli FNR J. Mol. Biol. 315 2002 275 283
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 275-283
-
-
Lamberg, K.E.1
Luther, C.2
Weber, K.D.3
Kiley, P.J.4
-
14
-
-
0033822626
-
Analysis of interactions between activating region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: Use of alanine scanning and suppression genetics
-
D.J. Lee, H.J. Wing, N.J. Savery, and S.J. Busby Analysis of interactions between activating region 1 of Escherichia coli FNR protein and the C-terminal domain of the RNA polymerase alpha subunit: use of alanine scanning and suppression genetics Mol. Microbiol. 37 2000 1032 1040
-
(2000)
Mol. Microbiol.
, vol.37
, pp. 1032-1040
-
-
Lee, D.J.1
Wing, H.J.2
Savery, N.J.3
Busby, S.J.4
-
15
-
-
0028300684
-
Location and orientation of an activating region in the Escherichia coli transcription factor, FNR
-
A. Bell, and S. Busby Location and orientation of an activating region in the Escherichia coli transcription factor, FNR Mol. Microbiol. 11 1994 383 390
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 383-390
-
-
Bell, A.1
Busby, S.2
-
16
-
-
14244253987
-
Additional determinants within Escherichia coli FNR activating region 1 and RNA polymerase α subunit required for transcription activation
-
K.D. Weber, O.D. Vincent, and P.J. Kiley Additional determinants within Escherichia coli FNR activating region 1 and RNA polymerase α subunit required for transcription activation J. Bacteriol. 187 2005 1724 1731
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1724-1731
-
-
Weber, K.D.1
Vincent, O.D.2
Kiley, P.J.3
-
17
-
-
0030761738
-
Transcription activation at class I FNR-dependent promoters: Identification of the activating surface of FNR and the corresponding contact site in the C-terminal domain of the RNA polymerase alpha subunit
-
S.M. Williams, N.J. Savery, S.J. Busby, and H.J. Wing Transcription activation at class I FNR-dependent promoters: identification of the activating surface of FNR and the corresponding contact site in the C-terminal domain of the RNA polymerase alpha subunit Nucl. Acids Res. 25 1997 4028 4034
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 4028-4034
-
-
Williams, S.M.1
Savery, N.J.2
Busby, S.J.3
Wing, H.J.4
-
18
-
-
0032078948
-
Transcription activation by Escherichia coli FNR protein: Similarities to, and differences from, the CRP paradigm
-
B. Li, H. Wing, D. Lee, H.C. Wu, and S. Busby Transcription activation by Escherichia coli FNR protein: similarities to, and differences from, the CRP paradigm Nucl. Acids Res. 26 1998 2075 2081
-
(1998)
Nucl. Acids Res.
, vol.26
, pp. 2075-2081
-
-
Li, B.1
Wing, H.2
Lee, D.3
Wu, H.C.4
Busby, S.5
-
19
-
-
0028853643
-
Spacing requirements for transcription activation by Escherichia coli FNR protein
-
H.J. Wing, S.M. Williams, and S.J. Busby Spacing requirements for transcription activation by Escherichia coli FNR protein J. Bacteriol. 177 1995 6704 6710
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6704-6710
-
-
Wing, H.J.1
Williams, S.M.2
Busby, S.J.3
-
20
-
-
0026317589
-
The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins
-
R. Williams, A. Bell, G. Sims, and S. Busby The role of two surface exposed loops in transcription activation by the Escherichia coli CRP and FNR proteins Nucl. Acids Res. 19 1991 6705 6712
-
(1991)
Nucl. Acids Res.
, vol.19
, pp. 6705-6712
-
-
Williams, R.1
Bell, A.2
Sims, G.3
Busby, S.4
-
21
-
-
0034666325
-
Role of activating region 1 of Escherichia coli FNR protein in transcription activation at class II promoters
-
H.J. Wing, J. Green, J.R. Guest, and S.J. Busby Role of activating region 1 of Escherichia coli FNR protein in transcription activation at class II promoters J. Biol. Chem. 275 2000 29061 29065
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 29061-29065
-
-
Wing, H.J.1
Green, J.2
Guest, J.R.3
Busby, S.J.4
-
22
-
-
0036837743
-
Transcription activation by FNR: Evidence for a functional activating region 2
-
T. Blake, A. Barnard, S.J. Busby, and J. Green Transcription activation by FNR: evidence for a functional activating region 2 J. Bacteriol. 184 2002 5855 5861
-
(2002)
J. Bacteriol.
, vol.184
, pp. 5855-5861
-
-
Blake, T.1
Barnard, A.2
Busby, S.J.3
Green, J.4
-
24
-
-
0032505869
-
Mössbauer spectroscopy as a tool for the study of activation/inactivation of the transcription regulator FNR in whole cells of Escherichia coli
-
C.V. Popescu, D.M. Bates, H. Beinert, E. Münck, and P.J. Kiley Mössbauer spectroscopy as a tool for the study of activation/inactivation of the transcription regulator FNR in whole cells of Escherichia coli Proc. Natl Acad. Sci. USA 95 1998 13431 13435
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13431-13435
-
-
Popescu, C.V.1
Bates, D.M.2
Beinert, H.3
Münck, E.4
Kiley, P.J.5
-
25
-
-
0023571178
-
Regulation and over-expression of the fnr gene of Escherichia coli
-
S. Spiro, and J.R. Guest Regulation and over-expression of the fnr gene of Escherichia coli J. Gen. Microbiol. 133 1987 3279 3288
-
(1987)
J. Gen. Microbiol.
, vol.133
, pp. 3279-3288
-
-
Spiro, S.1
Guest, J.R.2
-
26
-
-
0024117670
-
Inactivation of the FNR protein of Escherichia coli by targeted mutagenesis in the N-terminal region
-
S. Spiro, and J.R. Guest Inactivation of the FNR protein of Escherichia coli by targeted mutagenesis in the N-terminal region Mol. Microbiol. 2 1988 701 707
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 701-707
-
-
Spiro, S.1
Guest, J.R.2
-
27
-
-
0024003939
-
Aerobic expression of the nar operon of Escherichia coli in a fnr mutant
-
V. Bonnefoy, M. Fons, J. Ratouchniak, M.C. Pascal, and M. Chippaux Aerobic expression of the nar operon of Escherichia coli in a fnr mutant Mol. Microbiol. 2 1988 419 425
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 419-425
-
-
Bonnefoy, V.1
Fons, M.2
Ratouchniak, J.3
Pascal, M.C.4
Chippaux, M.5
-
28
-
-
0025175101
-
Mutations in fnr that alter anaerobic regulation of electron transport-associated genes in Escherichia coli
-
S.B. Melville, and R.P. Gunsalus Mutations in fnr that alter anaerobic regulation of electron transport-associated genes in Escherichia coli J. Biol. Chem. 265 1990 18733 18736
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18733-18736
-
-
Melville, S.B.1
Gunsalus, R.P.2
-
29
-
-
0037351068
-
Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals
-
J.M. Flynn, S.B. Neher, Y.I. Kim, R.T. Sauer, and T.A. Baker Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals Mol. Cell. 11 2003 671 683
-
(2003)
Mol. Cell.
, vol.11
, pp. 671-683
-
-
Flynn, J.M.1
Neher, S.B.2
Kim, Y.I.3
Sauer, R.T.4
Baker, T.A.5
-
31
-
-
0025959037
-
Fnr mutants that activate gene expression in the presence of oxygen
-
P.J. Kiley, and W.S. Reznikoff Fnr mutants that activate gene expression in the presence of oxygen J. Bacteriol. 173 1991 16 22
-
(1991)
J. Bacteriol.
, vol.173
, pp. 16-22
-
-
Kiley, P.J.1
Reznikoff, W.S.2
-
32
-
-
0025078440
-
In vivo and in vitro mutants of FNR the anaerobic transcriptional regulator of E. coli
-
A.D. Sharrocks, J. Green, and J.R. Guest In vivo and in vitro mutants of FNR the anaerobic transcriptional regulator of E. coli FEBS Letters 270 1990 119 122
-
(1990)
FEBS Letters
, vol.270
, pp. 119-122
-
-
Sharrocks, A.D.1
Green, J.2
Guest, J.R.3
-
33
-
-
0027451092
-
The activity of the Escherichia coli transcription factor FNR is regulated by a change in oligomeric state
-
B.A. Lazazzera, D.M. Bates, and P.J. Kiley The activity of the Escherichia coli transcription factor FNR is regulated by a change in oligomeric state Genes Dev. 7 1993 1993 2005
-
(1993)
Genes Dev.
, vol.7
, pp. 1993-2005
-
-
Lazazzera, B.A.1
Bates, D.M.2
Kiley, P.J.3
-
34
-
-
0032457906
-
Oxygen sensing by the global regulator, FNR: The role of the iron-sulfur cluster
-
P.J. Kiley, and H. Beinert Oxygen sensing by the global regulator, FNR: the role of the iron-sulfur cluster FEMS Microbiol. Rev. 22 1998 341 352
-
(1998)
FEMS Microbiol. Rev.
, vol.22
, pp. 341-352
-
-
Kiley, P.J.1
Beinert, H.2
-
35
-
-
0028990246
-
Characterization of FNR* mutant proteins indicates two distinct mechanisms for altering oxygen regulation of the Escherichia coli transcription factor FNR
-
D.M. Bates, B.A. Lazazzera, and P.J. Kiley Characterization of FNR* mutant proteins indicates two distinct mechanisms for altering oxygen regulation of the Escherichia coli transcription factor FNR J. Bacteriol. 177 1995 3972 3978
-
(1995)
J. Bacteriol.
, vol.177
, pp. 3972-3978
-
-
Bates, D.M.1
Lazazzera, B.A.2
Kiley, P.J.3
-
36
-
-
0035824571
-
Characterization of the dimerization domain in the FNR transcription factor
-
L.J. Moore, and P.J. Kiley Characterization of the dimerization domain in the FNR transcription factor J. Biol. Chem. 276 2001 45744 45750
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 45744-45750
-
-
Moore, L.J.1
Kiley, P.J.2
-
37
-
-
0033553474
-
Recognition, targeting, and hydrolysis of the λ O replication protein by the ClpP/ClpX protease
-
M. Gonciarz-Swiatek, A. Wawrzynow, S.J. Um, B.A. Learn, R. McMacken, and W.L. Kelley Recognition, targeting, and hydrolysis of the λ O replication protein by the ClpP/ClpX protease J. Biol. Chem. 274 1999 13999 14005
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 13999-14005
-
-
Gonciarz-Swiatek, M.1
Wawrzynow, A.2
Um, S.J.3
Learn, B.A.4
McMacken, R.5
Kelley, W.L.6
-
38
-
-
0023661228
-
Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution
-
I.T. Weber, and T.A. Steitz Structure of a complex of catabolite gene activator protein and cyclic AMP refined at 2.5 Å resolution J. Mol. Biol. 198 1987 311 326
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 311-326
-
-
Weber, I.T.1
Steitz, T.A.2
-
39
-
-
0021103983
-
Homology between CAP and Fnr, a regulator of anaerobic respiration in Escherichia coli
-
D.J. Shaw, D.W. Rice, and J.R. Guest Homology between CAP and Fnr, a regulator of anaerobic respiration in Escherichia coli J. Mol. Biol. 166 1983 241 247
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 241-247
-
-
Shaw, D.J.1
Rice, D.W.2
Guest, J.R.3
-
40
-
-
0033546303
-
Oligomerization state influences the degradation rate of 3-hydroxy-3-methylglutaryl-CoA reductase
-
H.H. Cheng, L. Up, H. Kumara, and R.D. Simony Oligomerization state influences the degradation rate of 3-hydroxy-3-methylglutaryl-CoA reductase J. Biol. Chem. 274 1999 17171 17178
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17171-17178
-
-
Cheng, H.H.1
Up, L.2
Kumara, H.3
Simony, R.D.4
-
41
-
-
0034625366
-
Ubiquitination of neuronal nitric-oxide synthase in vitro and in vivo
-
A.T. Bender, D.R. Demady, and Y. Osawa Ubiquitination of neuronal nitric-oxide synthase in vitro and in vivo J. Biol. Chem. 275 2000 17407 17411
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 17407-17411
-
-
Bender, A.T.1
Demady, D.R.2
Osawa, Y.3
-
42
-
-
0037740010
-
Latent ClpX-recognition signals ensure LexA destruction after DNA damage
-
S.B. Neher, J.M. Flynn, R.T. Sauer, and T.A. Baker Latent ClpX-recognition signals ensure LexA destruction after DNA damage Genes Dev. 17 2003 1084 1089
-
(2003)
Genes Dev.
, vol.17
, pp. 1084-1089
-
-
Neher, S.B.1
Flynn, J.M.2
Sauer, R.T.3
Baker, T.A.4
-
43
-
-
0034255455
-
The cysteine desulfurase, IscS, has a major role in in vivo Fe-S cluster formation in Escherichia coli
-
C.J. Schwartz, O. Djaman, J.A. Imlay, and P.J. Kiley The cysteine desulfurase, IscS, has a major role in in vivo Fe-S cluster formation in Escherichia coli Proc. Natl Acad. Sci. USA 97 2000 9009 9014
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 9009-9014
-
-
Schwartz, C.J.1
Djaman, O.2
Imlay, J.A.3
Kiley, P.J.4
-
45
-
-
0346750973
-
Techniques for studying the oxygen-sensitive transcription factor FNR from Escherichia coli
-
V.R. Sutton, and P.J. Kiley Techniques for studying the oxygen-sensitive transcription factor FNR from Escherichia coli Methods Enzymol. 370 2003 300 312
-
(2003)
Methods Enzymol.
, vol.370
, pp. 300-312
-
-
Sutton, V.R.1
Kiley, P.J.2
-
46
-
-
0028960504
-
Association of a polynuclear iron-sulfur center with a mutant FNR protein enhances DNA binding
-
N. Khoroshilova, H. Beinert, and P.J. Kiley Association of a polynuclear iron-sulfur center with a mutant FNR protein enhances DNA binding Proc. Natl Acad. Sci. USA 92 1995 2499 2503
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 2499-2503
-
-
Khoroshilova, N.1
Beinert, H.2
Kiley, P.J.3
-
47
-
-
0021686102
-
Evidence for the formation of a linear [3Fe-4S] cluster in partially unfolded aconitase
-
M.C. Kennedy, T.A. Kent, M. Emptage, H. Merkle, H. Beinert, and E. Münck Evidence for the formation of a linear [3Fe-4S] cluster in partially unfolded aconitase J. Biol. Chem. 259 1984 14463 14471
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 14463-14471
-
-
Kennedy, M.C.1
Kent, T.A.2
Emptage, M.3
Merkle, H.4
Beinert, H.5
Münck, E.6
-
48
-
-
0020776388
-
Semi-micro methods for analysis of labile sulfide and of labile sulfide plus sulfane sulfur in unusually stable iron-sulfur proteins
-
H. Beinert Semi-micro methods for analysis of labile sulfide and of labile sulfide plus sulfane sulfur in unusually stable iron-sulfur proteins Anal. Biochem. 131 1983 373 378
-
(1983)
Anal. Biochem.
, vol.131
, pp. 373-378
-
-
Beinert, H.1
-
49
-
-
0023272340
-
Interposon mutagenesis of soil and water bacteria: A family of DNA fragments designed for in vitro insertional mutagenesis of gram-negative bacteria
-
R. Fellay, J. Frey, and H. Krisch Interposon mutagenesis of soil and water bacteria: a family of DNA fragments designed for in vitro insertional mutagenesis of gram-negative bacteria Gene 52 1987 147 154
-
(1987)
Gene
, vol.52
, pp. 147-154
-
-
Fellay, R.1
Frey, J.2
Krisch, H.3
-
50
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
K.A. Datsenko, and B.L. Wanner One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products Proc. Natl Acad. Sci. USA 97 2000 6640 6645
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
51
-
-
0033638255
-
Dynamics of substrate denaturation and translocation by the ClpXP degradation machine
-
Y.I. Kim, R.E. Burton, B.M. Burton, R.T. Sauer, and T.A. Baker Dynamics of substrate denaturation and translocation by the ClpXP degradation machine Mol. Cell. 5 2000 639 648
-
(2000)
Mol. Cell.
, vol.5
, pp. 639-648
-
-
Kim, Y.I.1
Burton, R.E.2
Burton, B.M.3
Sauer, R.T.4
Baker, T.A.5
-
52
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
-
J.H. Miller Experiments in Molecular Genetics 1972 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
53
-
-
0026056114
-
Anaerobically expressed Escherichia coli genes identified by operon fusion techniques
-
M. Choe, and W.S. Reznikoff Anaerobically expressed Escherichia coli genes identified by operon fusion techniques J. Bacteriol. 173 1991 6139 6146
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6139-6146
-
-
Choe, M.1
Reznikoff, W.S.2
-
54
-
-
0017807890
-
Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
-
A.C. Chang, and S.N. Cohen Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid J. Bacteriol. 134 1978 1141 1156
-
(1978)
J. Bacteriol.
, vol.134
, pp. 1141-1156
-
-
Chang, A.C.1
Cohen, S.N.2
|