-
1
-
-
0014757386
-
A General Method Applicable to the Search for Similarities in the Amino Acid Sequences of Two Proteins
-
10.1016/0022-2836(70)90057-4, 5420325
-
Needleman SB, Wunsch CD. A General Method Applicable to the Search for Similarities in the Amino Acid Sequences of Two Proteins. Journal of Molecular Biology 1970, 48:443-453. 10.1016/0022-2836(70)90057-4, 5420325.
-
(1970)
Journal of Molecular Biology
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
2
-
-
0019887799
-
Identification of Common Molecular Subsequences
-
10.1016/0022-2836(81)90087-5, 7265238
-
Smith TF, Waterman MS. Identification of Common Molecular Subsequences. Journal of Molecular Biology 1981, 147:195-147. 10.1016/0022-2836(81)90087-5, 7265238.
-
(1981)
Journal of Molecular Biology
, vol.147
, pp. 195-1147
-
-
Smith, T.F.1
Waterman, M.S.2
-
4
-
-
0025183708
-
Basic Local Alignment Search Tool
-
Altschul SF, Gish W, Miller W, Myers E, Lipman D. Basic Local Alignment Search Tool. Journal of Molecular Biology 1990, 215:403-410.
-
(1990)
Journal of Molecular Biology
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
5
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
10.1126/science.7542800, 7542800
-
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM, McKenney K, Sutton G, FitzHugh W, Fields C, Gocayne JD, Scott J, Shirley R, Liu LI, Glodek A, Kelley JM, Weidman JF, Phillips CA, Spriggs T, Hedblom E, Cotton MD, Utterback TR, Hanna MC, Nguyen DT, Saudek DM, Brandon RC, Fine LD, Fritchman JL, Fuhrmann JL, Geoghagen NSM, Gnehm CL, McDonald LA, Small KV, Fraser CM, Smith HO, Venter JC. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995, 269(5223):496-512. 10.1126/science.7542800, 7542800., http://www.sciencemag.org/cgi/content/abstract/269/5223/496
-
(1995)
Science
, vol.269
, Issue.5223
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
FitzHugh, W.13
Fields, C.14
Gocayne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.M.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
6
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a New Generation of Protein Database Search Programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden T, Schaffer A, Zhang J, Zhang Z, Miller W, Lipman D. Gapped BLAST and PSI-BLAST: a New Generation of Protein Database Search Programs. Nucleic Acids Research 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694., http://nar.oxfordjournals.org/cgi/content/abstract/25/17/3389
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.2
Schaffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
7
-
-
0031732094
-
A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence
-
310774, 9750195
-
Florea L, Hartzell G, Zhang Z, Rubin GM, Miller W. A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence. Genome Research 1998, 8:967-974. 310774, 9750195.
-
(1998)
Genome Research
, vol.8
, pp. 967-974
-
-
Florea, L.1
Hartzell, G.2
Zhang, Z.3
Rubin, G.M.4
Miller, W.5
-
8
-
-
0034764307
-
SSAHA: A Fast Search Method for Large DNA Databases
-
10.1101/gr.194201, 311141, 11591649
-
Ning Z, Cox AJ, Mullikin JC. SSAHA: A Fast Search Method for Large DNA Databases. Genome Research 2001, 11(10):1725-1729. 10.1101/gr.194201, 311141, 11591649., http://www.genome.org/cgi/content/abstract/11/10/1725
-
(2001)
Genome Research
, vol.11
, Issue.10
, pp. 1725-1729
-
-
Ning, Z.1
Cox, A.J.2
Mullikin, J.C.3
-
9
-
-
0032945593
-
DIALIGN 2: Improvement of the Segment-to-segment Approach to Multiple Sequence Alignment
-
10.1093/bioinformatics/15.3.211, 10222408
-
Morgenstern B. DIALIGN 2: Improvement of the Segment-to-segment Approach to Multiple Sequence Alignment. Bioinformatics 1999, 15:211-218. 10.1093/bioinformatics/15.3.211, 10222408.
-
(1999)
Bioinformatics
, vol.15
, pp. 211-218
-
-
Morgenstern, B.1
-
10
-
-
0242470267
-
Efficient Multiple Genome Alignment
-
Höhl M, Kurtz S, Ohlebusch E. Efficient Multiple Genome Alignment. Bioinformatics 2002, 18(Suppl. 1):S312-S320., http://www.zbh.uni-hamburg.de/staff/kurtz/papers/HoehKurOhl2002.pdf
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Höhl, M.1
Kurtz, S.2
Ohlebusch, E.3
-
11
-
-
0036606576
-
Fast Algorithms for Large-scale Genome Alignment and Comparison
-
10.1093/nar/30.11.2478, 117189, 12034836
-
Delcher AL, Phillippy A, Carlton JM, Salzberg SL. Fast Algorithms for Large-scale Genome Alignment and Comparison. Nucleic Acids Research 2002, 30(11):2478-2483. 10.1093/nar/30.11.2478, 117189, 12034836., http://nar.oxfordjournals.org/cgi/content/abstract/30/11/2478
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.11
, pp. 2478-2483
-
-
Delcher, A.L.1
Phillippy, A.2
Carlton, J.M.3
Salzberg, S.L.4
-
12
-
-
2942538300
-
Versatile and Open Software for Comparing Large Genomes
-
10.1186/gb-2004-5-2-r12, 395750, 14759262
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg S. Versatile and Open Software for Comparing Large Genomes. Genome Biology 2004, 5(2). 10.1186/gb-2004-5-2-r12, 395750, 14759262., http://genomebiology.com/2004/5/2/R12
-
(2004)
Genome Biology
, vol.5
, Issue.2
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
Antonescu, C.6
Salzberg, S.7
-
13
-
-
0037267806
-
Human-Mouse Alignments with BLASTZ
-
10.1101/gr.809403, 430961, 12529312
-
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. Human-Mouse Alignments with BLASTZ. Genome Research 2003, 13:103-107. 10.1101/gr.809403, 430961, 12529312., http://www.genome.org/cgi/content/abstract/13/1/103
-
(2003)
Genome Research
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
Kent, W.J.2
Smit, A.3
Zhang, Z.4
Baertsch, R.5
Hardison, R.C.6
Haussler, D.7
Miller, W.8
-
14
-
-
2942603015
-
Fast and Sensitive Multiple Alignment of Large Genomic Sequences
-
10.1186/1471-2105-4-66, 521198, 14693042
-
Brudno M, Chapman M, Gottgens B, Batzoglou S, Morgenstern B. Fast and Sensitive Multiple Alignment of Large Genomic Sequences. BMC Bioinformatics 2003, 4:66. 10.1186/1471-2105-4-66, 521198, 14693042., http://www.biomedcentral.com/1471-2105/4/66
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 66
-
-
Brudno, M.1
Chapman, M.2
Gottgens, B.3
Batzoglou, S.4
Morgenstern, B.5
-
15
-
-
0037270315
-
AVID: A Global Alignment Program
-
10.1101/gr.789803, 430967, 12529311
-
Bray N, Dubchak I, Pachter L. AVID: A Global Alignment Program. Genome Research 2003, 13:97-102. 10.1101/gr.789803, 430967, 12529311.
-
(2003)
Genome Research
, vol.13
, pp. 97-102
-
-
Bray, N.1
Dubchak, I.2
Pachter, L.3
-
16
-
-
17244379179
-
The Many Faces of Sequence Alignment
-
10.1093/bib/6.1.6, 15826353
-
Batzoglou S. The Many Faces of Sequence Alignment. Brief Bioinform 2005, 6:6-22. 10.1093/bib/6.1.6, 15826353., http://bib.oxfordjournals.org/cgi/content/abstract/6/1/6
-
(2005)
Brief Bioinform
, vol.6
, pp. 6-22
-
-
Batzoglou, S.1
-
17
-
-
85031732548
-
Parametric Optimization of Sequence Alignment
-
Philadelphia, PA, USA: Society for Industrial and Applied Mathematics
-
Gusfield D, Balasubramanian K, Naor D. Parametric Optimization of Sequence Alignment. SODA '92: Proceedings of the third annual ACM-SIAM symposium on Discrete algorithms 1992, 432-439. Philadelphia, PA, USA: Society for Industrial and Applied Mathematics.
-
(1992)
SODA '92: Proceedings of the third annual ACM-SIAM symposium on Discrete algorithms
, pp. 432-439
-
-
Gusfield, D.1
Balasubramanian, K.2
Naor, D.3
-
18
-
-
0031694427
-
An Evaluation of Measures of Synonymous Codon Usage Bias
-
10.1007/PL00006384, 9732453
-
Comeron JM, Aguade M. An Evaluation of Measures of Synonymous Codon Usage Bias. Journal of Molecular Evolution 1998, 47(3):268-274. 10.1007/PL00006384, 9732453.
-
(1998)
Journal of Molecular Evolution
, vol.47
, Issue.3
, pp. 268-274
-
-
Comeron, J.M.1
Aguade, M.2
-
19
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton JC, Federhen S. Statistics of local complexity in amino acid sequences and sequence databases. Computers & Chemistry 1993, 17(2):149-163., http://www.sciencedirect.com/science/article/B6TFV-44PXMF3-45/2/5ecbb4a876d356f8572bde2b43015788
-
(1993)
Computers & Chemistry
, vol.17
, Issue.2
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
20
-
-
0007517571
-
Simple sequences of protein and DNA
-
Oxford University Press, Bishop MJ, Rawlings CJ
-
Wootton JC. Simple sequences of protein and DNA. DNA and Protein Sequence Analysis: A Practical Approach 1997, 169-183. Oxford University Press, Bishop MJ, Rawlings CJ.
-
(1997)
DNA and Protein Sequence Analysis: A Practical Approach
, pp. 169-183
-
-
Wootton, J.C.1
-
21
-
-
84856043672
-
A Mathematical Theory of Communication
-
Shannon CE. A Mathematical Theory of Communication. The Bell System Technical Journal 1948, 27:379-423., http://cm.bell-labs.com/cm/ms/what/shannonday/shannon1948.pdf
-
(1948)
The Bell System Technical Journal
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
22
-
-
0000107517
-
An Information Measure for Classification
-
Wallace CS, Boulton DM. An Information Measure for Classification. Computer Journal 1968, 11(2):185-194.
-
(1968)
Computer Journal
, vol.11
, Issue.2
, pp. 185-194
-
-
Wallace, C.S.1
Boulton, D.M.2
-
24
-
-
0025116731
-
Minimum Message Length Encoding and the Comparison of Macromolecules
-
Allison L, Yee CN. Minimum Message Length Encoding and the Comparison of Macromolecules. Bulletin of Mathematical Biology 1990, 52(3):431-452.
-
(1990)
Bulletin of Mathematical Biology
, vol.52
, Issue.3
, pp. 431-452
-
-
Allison, L.1
Yee, C.N.2
-
26
-
-
0026786131
-
Finite-state Models in the Alignment of Macromolecules
-
10.1007/BF00160262, 1518085
-
Allison L, Wallace CS, Yee CN. Finite-state Models in the Alignment of Macromolecules. Journal of Molecular Evolution 1992, 35:77-89. 10.1007/BF00160262, 1518085.
-
(1992)
Journal of Molecular Evolution
, vol.35
, pp. 77-89
-
-
Allison, L.1
Wallace, C.S.2
Yee, C.N.3
-
27
-
-
34547630480
-
A Simple Statistical Algorithm for Biological Sequence Compression
-
Cao MD, Dix TI, Allison L, Mears C. A Simple Statistical Algorithm for Biological Sequence Compression. Data Compression Conference 2007, 43-52., http://doi.ieeecomputersociety.org/10.1109/DCC.2007.7
-
(2007)
Data Compression Conference
, pp. 43-52
-
-
Cao, M.D.1
Dix, T.I.2
Allison, L.3
Mears, C.4
-
29
-
-
0014516784
-
The Information Content of a Multistate Distribution
-
10.1016/0022-5193(69)90041-1, 5821532
-
Boulton DM, Wallace CS. The Information Content of a Multistate Distribution. Journal of Theoretical Biology 1969, 23(2):269-278. 10.1016/0022-5193(69)90041-1, 5821532.
-
(1969)
Journal of Theoretical Biology
, vol.23
, Issue.2
, pp. 269-278
-
-
Boulton, D.M.1
Wallace, C.S.2
-
30
-
-
1642632854
-
On Spaced Seeds for Similarity Search
-
Keich U, Li M, Ma B, Tromp J. On Spaced Seeds for Similarity Search. Discrete Appl Math 2004, 138(3):253-263.
-
(2004)
Discrete Appl Math
, vol.138
, Issue.3
, pp. 253-263
-
-
Keich, U.1
Li, M.2
Ma, B.3
Tromp, J.4
-
31
-
-
67650686477
-
Computing Substitution Matrices for Genomic Comparative Analysis
-
Cao MD, Dix TI, Allison L. Computing Substitution Matrices for Genomic Comparative Analysis. PAKDD 2009, LNAI 5476 2009, 647-655.
-
(2009)
PAKDD 2009, LNAI 5476
, pp. 647-655
-
-
Cao, M.D.1
Dix, T.I.2
Allison, L.3
-
32
-
-
0025878149
-
Amino Acid Substitution Matrices from an Information Theoretic Perspective
-
10.1016/0022-2836(91)90193-A, 2051488
-
Altschul SF. Amino Acid Substitution Matrices from an Information Theoretic Perspective. Journal of Molecular Biology 1991, 219(3):555-565. 10.1016/0022-2836(91)90193-A, 2051488., http://www.sciencedirect.com/science/article/B6WK7-4FNGD09-4X/2/a0f9e00dbe41135c2072a3f7463c46d6
-
(1991)
Journal of Molecular Biology
, vol.219
, Issue.3
, pp. 555-565
-
-
Altschul, S.F.1
-
33
-
-
0036300594
-
Exon Discovery by Genomic Sequence Alignment
-
10.1093/bioinformatics/18.6.777, 12075013
-
Morgenstern B, Rinner O, Abdeddaim S, Haase D, Mayer K, Dress A, Mewes HW. Exon Discovery by Genomic Sequence Alignment. Bioinformatics 2002, 18:777-787. 10.1093/bioinformatics/18.6.777, 12075013.
-
(2002)
Bioinformatics
, vol.18
, pp. 777-787
-
-
Morgenstern, B.1
Rinner, O.2
Abdeddaim, S.3
Haase, D.4
Mayer, K.5
Dress, A.6
Mewes, H.W.7
-
34
-
-
0030585734
-
Evaluation of Gene Structure Prediction Programs
-
10.1006/geno.1996.0298, 8786136
-
Burset M, Guigó R. Evaluation of Gene Structure Prediction Programs. Genomics 1996, 34(3):353-367. 10.1006/geno.1996.0298, 8786136.
-
(1996)
Genomics
, vol.34
, Issue.3
, pp. 353-367
-
-
Burset, M.1
Guigó, R.2
-
35
-
-
2942516151
-
Benchmarking Tools for the Alignment of Functional Noncoding DNA
-
10.1186/1471-2105-5-6, 344529, 14736341
-
Pollard DA, Bergman CM, Stoye J, Celniker SE, Eisen MB. Benchmarking Tools for the Alignment of Functional Noncoding DNA. BMC Bioinformatics 2004, 5:6. 10.1186/1471-2105-5-6, 344529, 14736341., http://www.biomedcentral.com/1471-2105/5/6
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 6
-
-
Pollard, D.A.1
Bergman, C.M.2
Stoye, J.3
Celniker, S.E.4
Eisen, M.B.5
-
36
-
-
34250365369
-
Analyses of Deep Mammalian Sequence Alignments and Constraint Predictions for 1% of The Human Genome
-
10.1101/gr.6034307, 1891336, 17567995
-
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VVB, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler D, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton RE, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, LindbladToh K, Lander ES, Hinrichs A, Trumbower H, Clawson H, Zweig A, Kuhn RM, Barber G, Harte R, Karolchik D, Field MA, Moore RA, Matthewson CA, Schein JE, Marra MA, Antonarakis SE, Batzoglou S, Goldman N, Hardison R, Haussler D, Miller W, Pachter L, Green ED, Sidow A. Analyses of Deep Mammalian Sequence Alignments and Constraint Predictions for 1% of The Human Genome. Genome Research 2007, 17(6). 10.1101/gr.6034307, 1891336, 17567995., http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1891336
-
(2007)
Genome Research
, vol.17
, Issue.6
-
-
Margulies, E.H.1
Cooper, G.M.2
Asimenos, G.3
Thomas, D.J.4
Dewey, C.N.5
Siepel, A.6
Birney, E.7
Keefe, D.8
Schwartz, A.S.9
Hou, M.10
Taylor, J.11
Nikolaev, S.12
Montoya-Burgos, J.I.13
Löytynoja, A.14
Whelan, S.15
Pardi, F.16
Massingham, T.17
Brown, J.B.18
Bickel, P.19
Holmes, I.20
Mullikin, J.C.21
Ureta-Vidal, A.22
Paten, B.23
Stone, E.A.24
Rosenbloom, K.R.25
Kent, W.J.26
Bouffard, G.G.27
Guan, X.28
Hansen, N.F.29
Idol, J.R.30
Maduro, V.V.B.31
Maskeri, B.32
McDowell, J.C.33
Park, M.34
Thomas, P.J.35
Young, A.C.36
Blakesley, R.W.37
Muzny, D.M.38
Sodergren, E.39
Wheeler, D.40
Worley, K.C.41
Jiang, H.42
Weinstock, G.M.43
Gibbs, R.A.44
Graves, T.45
Fulton, R.E.46
Mardis, E.R.47
Wilson, R.K.48
Clamp, M.49
Cuff, J.50
Gnerre, S.51
Jaffe, D.B.52
Chang, J.L.53
LindbladToh, K.54
Lander, E.S.55
Hinrichs, A.56
Trumbower, H.57
Clawson, H.58
Zweig, A.59
Kuhn, R.M.60
Barber, G.61
Harte, R.62
Karolchik, D.63
Field, M.A.64
Moore, R.A.65
Matthewson, C.A.66
Schein, J.E.67
Marra, M.A.68
Antonarakis, S.E.69
Batzoglou, S.70
Goldman, N.71
Hardison, R.72
Haussler, D.73
Miller, W.74
Pachter, L.75
Green, E.D.76
Sidow, A.77
more..
-
37
-
-
24644457706
-
BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark
-
Thompson JD, Koehl P, Ripp R, Poch O. BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark. Proteins: Structure, Function, and Bioinformatics 2005, 61:127-136.
-
(2005)
Proteins: Structure, Function, and Bioinformatics
, vol.61
, pp. 127-136
-
-
Thompson, J.D.1
Koehl, P.2
Ripp, R.3
Poch, O.4
-
38
-
-
0032884653
-
Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs
-
10.1101/gr.9.9.815, 310816, 10508839
-
Jareborg N, Birney E, Durbin R. Comparative Analysis of Noncoding Regions of 77 Orthologous Mouse and Human Gene Pairs. Genome Research 1999, 9(9):815-824. 10.1101/gr.9.9.815, 310816, 10508839., http://genome.cshlp.org/content/9/9/815.abstract
-
(1999)
Genome Research
, vol.9
, Issue.9
, pp. 815-824
-
-
Jareborg, N.1
Birney, E.2
Durbin, R.3
-
39
-
-
76949098763
-
Towards realistic benchmarks for multiple alignments of non-coding sequences
-
10.1186/1471-2105-11-54, 2823711, 20102627
-
Kim J, Sinha S. Towards realistic benchmarks for multiple alignments of non-coding sequences. BMC Bioinformatics 2010, 11:54. 10.1186/1471-2105-11-54, 2823711, 20102627., http://www.biomedcentral.com/1471-2105/11/54
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 54
-
-
Kim, J.1
Sinha, S.2
-
40
-
-
84874759211
-
PlasmoDB: Plasmodium Genome Resource, Release 6.2
-
[Accessed Nov 2009], PlasmoDB
-
PlasmoDB PlasmoDB: Plasmodium Genome Resource, Release 6.2. 2009, [Accessed Nov 2009], PlasmoDB., http://www.plasmodb.org/common/downloads/release-6.2/
-
(2009)
-
-
-
41
-
-
69249217827
-
Plasmodium falciparum and Plasmodium vivax: so similar, yet very different
-
10.1007/s00436-009-1521-y, 19543915
-
Das A, Sharma M, Gupta B, Dash A. Plasmodium falciparum and Plasmodium vivax: so similar, yet very different. Parasitology Research 2009, 105(4):1169-1171. 10.1007/s00436-009-1521-y, 19543915.
-
(2009)
Parasitology Research
, vol.105
, Issue.4
, pp. 1169-1171
-
-
Das, A.1
Sharma, M.2
Gupta, B.3
Dash, A.4
-
42
-
-
45149113022
-
Comparative Analysis of Long DNA Sequences by Per Element Information Content Using Different Contexts
-
10.1186/1471-2105-8-S2-S10, 1892068, 17493248
-
Dix TI, Powell D, Allison L, Bernal J, Jaeger S, Stern L. Comparative Analysis of Long DNA Sequences by Per Element Information Content Using Different Contexts. BMC Bioinformatics 2007, 8(Suppl 2):S10. 10.1186/1471-2105-8-S2-S10, 1892068, 17493248., http://www.biomedcentral.com/1471-2105/8/S2/S10
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL 2
-
-
Dix, T.I.1
Powell, D.2
Allison, L.3
Bernal, J.4
Jaeger, S.5
Stern, L.6
-
43
-
-
78651513931
-
A Genome Alignment Algorithm Based on Compression
-
Tech. Rep. 2009/233, Faculty of Information Technology, Monash University, Victoria, Australia
-
Cao MD, Dix TI, Allison L. A Genome Alignment Algorithm Based on Compression. 2009, Tech. Rep. 2009/233, Faculty of Information Technology, Monash University, Victoria, Australia.
-
(2009)
-
-
Cao, M.D.1
Dix, T.I.2
Allison, L.3
-
45
-
-
0026458378
-
Amino Acid Substitution Matrices from Protein Blocks
-
Henikoff S, Henikoff JG. Amino Acid Substitution Matrices from Protein Blocks. Proceedings of the National Academy of Sciences 1992, 89(22):10915-10919., http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=50453
-
(1992)
Proceedings of the National Academy of Sciences
, vol.89
, Issue.22
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
46
-
-
57149085484
-
Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome
-
10.1093/nar/gkn635, 2588515, 18948281
-
Paila U, Kondam R, Ranjan A. Genome bias influences amino acid choices: analysis of amino acid substitution and re-compilation of substitution matrices exclusive to an AT-biased genome. Nucleic Acids Research 2008, 36(21):6664-6675. 10.1093/nar/gkn635, 2588515, 18948281., http://nar.oxfordjournals.org/content/36/21/6664.abstract
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.21
, pp. 6664-6675
-
-
Paila, U.1
Kondam, R.2
Ranjan, A.3
-
47
-
-
63149153318
-
Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty
-
10.1186/1471-2105-10-S3-S1, 2665049, 19344477
-
Agrawal A, Huang X. Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty. BMC Bioinformatics 2009, 10(Suppl 3):S1. 10.1186/1471-2105-10-S3-S1, 2665049, 19344477., http://www.biomedcentral.com/1471-2105/10/S3/S1
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL 3
-
-
Agrawal, A.1
Huang, X.2
-
48
-
-
16344388556
-
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
-
10.1093/bioinformatics/bti070, 15509610
-
Yu YK, Altschul SF. The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinformatics 2005, 21(7):902-911. 10.1093/bioinformatics/bti070, 15509610., http://bioinformatics.oxfordjournals.org/content/21/7/902.abstract
-
(2005)
Bioinformatics
, vol.21
, Issue.7
, pp. 902-911
-
-
Yu, Y.K.1
Altschul, S.F.2
-
49
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
55814, 11452024, 10.1093/nar/29.14.2994
-
Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Research 2001, 29(14):2994-3005. 55814, 11452024, 10.1093/nar/29.14.2994., http://nar.oxfordjournals.org/content/29/14/2994.abstract
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.14
, pp. 2994-3005
-
-
Schäffer, A.A.1
Aravind, L.2
Madden, T.L.3
Shavirin, S.4
Spouge, J.L.5
Wolf, Y.I.6
Koonin, E.V.7
Altschul, S.F.8
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