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Volumn 8, Issue SUPPL. 2, 2008, Pages

Comparative analysis of long DNA sequences by per element information content using different contexts

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; DNA; LINEAR TRANSFORMATIONS; MATHEMATICAL TRANSFORMATIONS;

EID: 45149113022     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S2-S10     Document Type: Article
Times cited : (33)

References (20)
  • 3
    • 0035665965 scopus 로고    scopus 로고
    • Discovering patterns in Plasmodium falciparum genomic DNA
    • 10.1016/S0166-6851(01)00388-7 11738708
    • Stern L Allison L Coppel RL Dix TI Discovering patterns in Plasmodium falciparum genomic DNA Mol Biochem Parasitol 2001, 118(2):175-186 10.1016/S0166-6851(01)00388-7 11738708
    • (2001) Mol Biochem Parasitol , vol.118 , Issue.2 , pp. 175-186
    • Stern, L.1    Allison, L.2    Coppel, R.L.3    Dix, T.I.4
  • 4
    • 11144354393 scopus 로고    scopus 로고
    • Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
    • 10.1038/nature02398 15071595
    • Matsuzaki M Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D Nature 2004, 428:653-657 10.1038/nature02398 15071595
    • (2004) Nature , vol.428 , pp. 653-657
    • Matsuzaki, M.1
  • 6
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • 379-423
    • Shannon CE A mathematical theory of communication Bell Systems Technical Journal 1948, 27:379-423, 623-656
    • (1948) Bell Systems Technical Journal , vol.27 , pp. 623-656
    • Shannon, C.E.1
  • 9
    • 0000100455 scopus 로고
    • A new challenge for compression algorithms: Genetic sequences
    • 10.1016/0306-4573(94)90014-0
    • Grumbach S Tahi F A new challenge for compression algorithms: Genetic sequences Information Processing and Management 1994, 30(6):875-866 10.1016/0306-4573(94)90014-0
    • (1994) Information Processing and Management , vol.30 , Issue.6 , pp. 866-875
    • Grumbach, S.1    Tahi, F.2
  • 10
    • 0036947893 scopus 로고    scopus 로고
    • DNACompress: Fast and effective DNA sequence compression
    • 10.1093/bioinformatics/18.12.1696 12490460
    • Chen X Li M Ma B John T DNACompress: Fast and effective DNA sequence compression Bioinformatics 2002, 18(2):1696-1698 10.1093/bioinformatics/ 18.12.1696 12490460
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 1696-1698
    • Chen, X.1    Li, M.2    Ma, B.3    John, T.4
  • 11
    • 0032919622 scopus 로고    scopus 로고
    • Significantly lower entropy estimates for natural DNA sequences
    • Loewenstern D Yianilos P Significantly lower entropy estimates for natural DNA sequences J Computational Biology 1999, 6:125-142
    • (1999) J Computational Biology , vol.6 , pp. 125-142
    • Loewenstern, D.1    Yianilos, P.2
  • 12
    • 13844281512 scopus 로고    scopus 로고
    • An efficient normalized maximum likelihood algorithm for DNA sequence compression
    • 10.1145/1055709.1055711
    • Korodi G Tabus I An efficient normalized maximum likelihood algorithm for DNA sequence compression ACM Trans Information Systems 2005, 23:1046-8188 10.1145/1055709.1055711
    • (2005) ACM Trans Information Systems , vol.23 , pp. 1046-8188
    • Korodi, G.1    Tabus, I.2
  • 13
    • 34547630480 scopus 로고    scopus 로고
    • A Fast Statistical Biological Sequence Compressor for Pattern Discovery
    • IEEE Press
    • Cao MD Dix TI Allison L Mears C A Fast Statistical Biological Sequence Compressor for Pattern Discovery Data Compression Conference IEEE Press 2007:43-52
    • (2007) Data Compression Conference , pp. 43-52
    • Cao, M.D.1    Dix, T.I.2    Allison, L.3    Mears, C.4
  • 16
    • 0017493286 scopus 로고
    • A universal algorithm for sequential data compression
    • 10.1109/TIT.1977.1055714
    • Ziv J Lempel A A universal algorithm for sequential data compression IEEE Trans Information Theory 1977, IT-23:337-343 10.1109/ TIT.1977.1055714
    • (1977) IEEE Trans Information Theory , vol.IT-23 , pp. 337-343
    • Ziv, J.1    Lempel, A.2
  • 17
    • 0019887799 scopus 로고
    • Identification of Common Molecular Subsequences
    • 10.1016/0022-2836(81)90087-5 7265238
    • Smith TF Waterman MS Identification of Common Molecular Subsequences J Mol Biol 1981, 147:195-197 10.1016/0022-2836(81)90087-5 7265238
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 19
    • 12744257602 scopus 로고    scopus 로고
    • Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum
    • 10.1126/science.282.5391.1126 9804551
    • Gardner MJ Chromosome 2 Sequence of the Human Malaria Parasite Plasmodium falciparum Science 1998, 282:1126-1132 10.1126/ science.282.5391.1126 9804551
    • (1998) Science , vol.282 , pp. 1126-1132
    • Gardner, M.J.1
  • 20
    • 0036430690 scopus 로고    scopus 로고
    • Plasmodium falciparum virulence determinants unveiled
    • 10.1186/gb-2002-3-11-reviews1031 12441004 244921 REVIEWS1031
    • Crabb BS Cowman AF Plasmodium falciparum virulence determinants unveiled Genome Biol 2002, 3(11):REVIEWS1031 10.1186/gb-2002-3-11-reviews1031 12441004 244921
    • (2002) Genome Biol , vol.3 , Issue.11
    • Crabb, B.S.1    Cowman, A.F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.