메뉴 건너뛰기




Volumn 5, Issue 12, 2010, Pages

Estimating genetic variability in non-model taxa: A general procedure for discriminating sequence errors from actual variation

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; PHOSPHOLIPASE A2; VIPER VENOM;

EID: 78650084905     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0015204     Document Type: Article
Times cited : (9)

References (28)
  • 1
    • 3242884054 scopus 로고    scopus 로고
    • Finescale phylogenetic architecture of a complex bacterial community
    • Acinas SG, Klepac-Ceraj V, Hunt DE, Pharino C, Ceraj I, et al. (2004) Finescale phylogenetic architecture of a complex bacterial community. Nature 430: 551-554.
    • (2004) Nature , vol.430 , pp. 551-554
    • Acinas, S.G.1    Klepac-Ceraj, V.2    Hunt, D.E.3    Pharino, C.4    Ceraj, I.5
  • 3
    • 0031851808 scopus 로고    scopus 로고
    • Evolution and ecology of MHC molecules: From genomics to sexual selection
    • Edwards SV, Hedrick PW (1998) Evolution and ecology of MHC molecules: from genomics to sexual selection. Trends Ecol Evol 13: 305-311.
    • (1998) Trends Ecol Evol , vol.13 , pp. 305-311
    • Edwards, S.V.1    Hedrick, P.W.2
  • 4
    • 77955355152 scopus 로고    scopus 로고
    • MHC gene copy number variation in Tasmanian devils: Implications for the spread of a contagious cancer
    • Siddle HV, Marzec J, Cheng Y, Jones M, Belov K (2010) MHC gene copy number variation in Tasmanian devils: implications for the spread of a contagious cancer. Proc R Soc B 277: 2001-6.
    • (2010) Proc R Soc B , vol.277 , pp. 2001-2006
    • Siddle, H.V.1    Marzec, J.2    Cheng, Y.3    Jones, M.4    Belov, K.5
  • 5
    • 77951610835 scopus 로고    scopus 로고
    • Positions under Positive Selection-Key for Selectivity and Potency of Scorpion a-Toxins
    • Weinberger H, Moran Y, Gordon D, Turkov M, Kahn R, et al. (2010) Positions under Positive Selection-Key for Selectivity and Potency of Scorpion a-Toxins. Mol Biol Evol 27: 1025-1034.
    • (2010) Mol Biol Evol , vol.27 , pp. 1025-1034
    • Weinberger, H.1    Moran, Y.2    Gordon, D.3    Turkov, M.4    Kahn, R.5
  • 6
    • 40949162025 scopus 로고    scopus 로고
    • Rapid evolution by positive selection and gene gain and loss: PLA2 venom genes in closely related Sistrurus rattlesnakes with divergent diets
    • Gibbs HL, Rossiter W (2008) Rapid evolution by positive selection and gene gain and loss: PLA2 venom genes in closely related Sistrurus rattlesnakes with divergent diets. J Mol Evol 66: 151-166.
    • (2008) J Mol Evol , vol.66 , pp. 151-166
    • Gibbs, H.L.1    Rossiter, W.2
  • 7
    • 36049052295 scopus 로고    scopus 로고
    • Phospholipase A(2) diversity and polymorphism in European viper venoms: Paradoxical molecular evolution in Viperinae
    • Jan VM, Guillemin I, Robbe-Vincent A, Choumet V (2007) Phospholipase A(2) diversity and polymorphism in European viper venoms: Paradoxical molecular evolution in Viperinae. Toxicon 50: 1140-1161.
    • (2007) Toxicon , vol.50 , pp. 1140-1161
    • Jan, V.M.1    Guillemin, I.2    Robbe-Vincent, A.3    Choumet, V.4
  • 8
    • 45349103049 scopus 로고    scopus 로고
    • Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata
    • Gomulski LM, Dimopoulos G, Xi Z, Soares MB, Bonaldo MF, et al. (2008) Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata. BMC Genomics 9: 243.
    • (2008) BMC Genomics , vol.9 , pp. 243
    • Gomulski, L.M.1    Dimopoulos, G.2    Xi, Z.3    Soares, M.B.4    Bonaldo, M.F.5
  • 9
    • 77953045048 scopus 로고    scopus 로고
    • Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides
    • Ziemert N, Ishida K, Weiz A, Hertweck C, Dittmann E (2010) Exploiting the natural diversity of microviridin gene clusters for discovery of novel tricyclic depsipeptides. Appl Environ Microbiol 76: 3568-74.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 3568-3574
    • Ziemert, N.1    Ishida, K.2    Weiz, A.3    Hertweck, C.4    Dittmann, E.5
  • 10
    • 0024368667 scopus 로고
    • Fidelity of DNA-Polymerases in DNA Amplification
    • Keohavong P, Thilly WG (1989) Fidelity of DNA-Polymerases in DNA Amplification. Proc Natl Acad Sci U S A 86: 9253-9257.
    • (1989) Proc Natl Acad Sci U S A , vol.86 , pp. 9253-9257
    • Keohavong, P.1    Thilly, W.G.2
  • 11
    • 0033457336 scopus 로고    scopus 로고
    • PCR error and molecular population genetics
    • Kobayashi N, Tamura K, Aotsuka T (1999) PCR error and molecular population genetics. Biochem Genet 37: 317-321.
    • (1999) Biochem Genet , vol.37 , pp. 317-321
    • Kobayashi, N.1    Tamura, K.2    Aotsuka, T.3
  • 12
    • 0023850178 scopus 로고
    • Primer- Directed Enzymatic Amplification of DNA with a Thermostable DNAPolymerase
    • Saiki RK, Gelfand DH, Stoffel S, Scharf SJ, Higuchi R, et al. (1988) Primer- Directed Enzymatic Amplification of DNA with a Thermostable DNAPolymerase. Science 239: 487-491.
    • (1988) Science , vol.239 , pp. 487-491
    • Saiki, R.K.1    Gelfand, D.H.2    Stoffel, S.3    Scharf, S.J.4    Higuchi, R.5
  • 14
    • 0034736505 scopus 로고    scopus 로고
    • Adaptive evolution of animal toxin multigene families
    • Kordiš D, Gubenšek F (2000) Adaptive evolution of animal toxin multigene families. Gene 261: 43-52.
    • (2000) Gene , vol.261 , pp. 43-52
    • Kordiš, D.1    Gubenšek, F.2
  • 15
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • Nei M, Rooney AP (2005) Concerted and birth-and-death evolution of multigene families. Ann Rev Genet 39: 121-152.
    • (2005) Ann Rev Genet , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 16
    • 33748413642 scopus 로고    scopus 로고
    • Evolution of MHC class IIB in the genome of wild and ornamental guppies, Poecilia reticulata
    • van Oosterhout C, Joyce DA, Cummings SM (2006) Evolution of MHC class IIB in the genome of wild and ornamental guppies, Poecilia reticulata. Heredity 97: 111-118.
    • (2006) Heredity , vol.97 , pp. 111-118
    • van Oosterhout, C.1    Joyce, D.A.2    Cummings, S.M.3
  • 17
    • 0031727088 scopus 로고    scopus 로고
    • PCR amplification of murine immunoglobulin germline V genes: Strategies for minimization of recombination artefacts
    • Zylstra P, Rothenfluh HS, Weiller GF, Blanden RV, Steele EJ (1998) PCR amplification of murine immunoglobulin germline V genes: Strategies for minimization of recombination artefacts. Immunol Cell Biol 76: 395-405.
    • (1998) Immunol Cell Biol , vol.76 , pp. 395-405
    • Zylstra, P.1    Rothenfluh, H.S.2    Weiller, G.F.3    Blanden, R.V.4    Steele, E.J.5
  • 18
    • 0037730817 scopus 로고    scopus 로고
    • Mitochondrial DNA
    • In: Baker AJ, ed, Oxford: Blackwell Science
    • Randi E (2000) Mitochondrial DNA. In: Baker AJ, ed. Molecular Methods in Ecology. Oxford: Blackwell Science. pp 136-167.
    • (2000) Molecular Methods in Ecology , pp. 136-167
    • Randi, E.1
  • 19
    • 77952883477 scopus 로고    scopus 로고
    • Solutions for PCR, cloning and sequencing errors in population genetic analysis
    • Cummings SM, McMullan M, Joyce DA, van Oosterhout C (2010) Solutions for PCR, cloning and sequencing errors in population genetic analysis. Cons Genet 11: 1095-1097.
    • (2010) Cons Genet , vol.11 , pp. 1095-1097
    • Cummings, S.M.1    McMullan, M.2    Joyce, D.A.3    van Oosterhout, C.4
  • 20
    • 2442637641 scopus 로고    scopus 로고
    • NUMTs in Sequenced Eukaryotic Genomes
    • Richly E, Leister D (2004) NUMTs in Sequenced Eukaryotic Genomes. Mol Biol Evol 21: 1081-1084.
    • (2004) Mol Biol Evol , vol.21 , pp. 1081-1084
    • Richly, E.1    Leister, D.2
  • 22
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J, Sanchez-DelBarrio J, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sanchez-DelBarrio, J.2    Messeguer, X.3    Rozas, R.4
  • 23
    • 77954815698 scopus 로고    scopus 로고
    • Unique structural characteristics and evolution of a cluster of venom phospholipase A2 isozyme genes of Protobothrops flavoviridis snake
    • Ikeda N, Chijiwa T, Matsubara K, Oda-Ueda N, Hattori S, et al. (2010) Unique structural characteristics and evolution of a cluster of venom phospholipase A2 isozyme genes of Protobothrops flavoviridis snake. Gene 461: 15-25.
    • (2010) Gene , vol.461 , pp. 15-25
    • Ikeda, N.1    Chijiwa, T.2    Matsubara, K.3    Oda-Ueda, N.4    Hattori, S.5
  • 25
    • 0000625869 scopus 로고
    • Analyzing Tables of Statistical Tests
    • Rice WR (1989) Analyzing Tables of Statistical Tests. Evolution 43: 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 26
    • 71949084343 scopus 로고    scopus 로고
    • When continents collide: Phylogeny, historical biogeography and systematics of the medically important viper genus Echis (Squamata: Serpentes: Viperidae)
    • Pook CE, Joger U, Stumpel N, Wu{double acute}ster W (2009) When continents collide: phylogeny, historical biogeography and systematics of the medically important viper genus Echis (Squamata: Serpentes: Viperidae). Mol Phylogenet Evol 53: 792-807.
    • (2009) Mol Phylogenet Evol , vol.53 , pp. 792-807
    • Pook, C.E.1    Joger, U.2    Stumpel, N.3    Wuster, W.4
  • 27
    • 0034496790 scopus 로고    scopus 로고
    • Mitochondrial DNA phylogeography of the polytypic North American rat snake (Elaphe obsoleta): A critique of the subspecies concept
    • Burbrink FT, Lawson R, Slowinski JB (2000) Mitochondrial DNA phylogeography of the polytypic North American rat snake (Elaphe obsoleta): A critique of the subspecies concept. Evolution 54: 2107-2118.
    • (2000) Evolution , vol.54 , pp. 2107-2118
    • Burbrink, F.T.1    Lawson, R.2    Slowinski, J.B.3
  • 28
    • 0028149366 scopus 로고
    • Convenient Single-Step, One Tube Purification of Pcr Products for Direct Sequencing
    • Werle E, Schneider C, Renner M, Volker M, Fiehn W (1994) Convenient Single-Step, One Tube Purification of Pcr Products for Direct Sequencing. Nucleic Acids Res 22: 4354-4355.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4354-4355
    • Werle, E.1    Schneider, C.2    Renner, M.3    Volker, M.4    Fiehn, W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.