Molecular mapping of quantitative trait loci for domestication traits and β-glucan content in a wheat recombinant inbred line population

Euphytica

Volumn 177, Issue 2, 2011, Pages 179-190

  Manickavelu, Alagu ^a   Kawaura, Kanako ^a   Imamura, Hisako ^a   Mori, Michiko ^a   Ogihara, Yasunari ^a  

^a YOKOHAMA CITY UNIVERSITY   (Japan)

Author keywords

Genetic linkage map; QTL; RIL; SSR; Triticum aestivum

Indexed keywords

TRITICUM AESTIVUM; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 78650000552     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0217-9     Document Type: Article

References (58)

1. Aguilar V, Stamp P, Winzeler M, Winzeler H, Schachermayr G, Keller B, Zanetti S, Messmer MM (2005) Inheritance of field resistance to Stagonospora nodorum leaf and glume blotch and correlations with other morphological traits in hexaploid wheat (Triticum aestivum L.). Theor Appl Genet 111: 325-336.
2. Ahmed TA, Tsujimoto H, Sasakuma T (2000) Identification of RFLP markers linked with heading date and its heterosis in hexaploid wheat. Euphytica 116: 111-119.
3. Ammiraju JSS, Dholakia BB, Santra DK, Singh H, Lagu MD, Tamhankar SA, Dhaliwal HS, Rao VS, Gupta VS, Ranjekar PK (2001) Identification of inter simple sequence repeat (ISSR) markers associated with seed size in wheat. Theor Appl Genet 102: 726-773.
4. Bennet MD, Leitch IJ (1995) Nuclear DNA amounts in angiosperms. Ann Bot 76: 113-176.
5. Borner A, Worland AJ, Plaschke J, Schumann E, Law CN (1993) Pleiotropic effects of genes for reduced height (Rht) and day-length insensitivity (Ppd) on yield and its components for wheat grown in Middle Europe. Plant Breed 111: 204-216.
6. Borner A, Schumann E, Furste A, Coster H, Leithold B, Roder MS, Weber WE (2002) Mapping of quantitative trait loci determining agronomic important characters in hexaploid wheat. Theor Appl Genet 105: 921-936.
7. Breseghello F, Sorrells ME (2006) Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics 172: 1165-1177.
8. Breseghello F, Sorrells ME (2007) QTL analysis of kernel size and shape in two hexaploid wheat mapping population. Field Crops Res 101: 172-179.
9. m. Theor Appl Genet 105: 585-593.
10. Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB (2006) Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1, 3; 1, 4)-b-D-Glucans. Science 311: 1940-1942.
11. Campbell KG, Bergman CJ, Gualberto DG, Anderson JA, Giroux MJ, Hareland G, Fulcher RG, Sorrells ME, Finney PL (1999) Quantitative trait loci associated with kernel traits in a soft x hard wheat cross. Crop Sci 39: 1184-1195.
12. Carpita NC, Defernez M, Findlay K, Wells B, Shoue DA, Catchpole G, Wilson RH, Mccann MC (2001) Cell wall architecture of the elongating maize coleoptile. Plant Physiol 127: 551-565.
13. Chu CG, Xu SS, Friesen TL, Faris JD (2008) Whole genome mapping in a wheat doubled haploid population using SSRs and TRAPs and the identification of QTL for agronomic traits. Mol Breed 22: 251-266.
14. Coventry SJ, Barr AR, Eglinton JK, McDonald GK (2003) The determinants and genome locations influencing grain weight and size in barley (Hordeum vulgare L.). Aust J Agric Res 54: 1103-1115.
15. Doblin MS, Pettolino FA, Wilson SM, Campbell R, Burton RA, Fincher GB, Newbigin ED, Bacic A (2009) A barley cellulose synthase like CSLH gene mediates (1, 3; 1, 4)-b-D-glucan synthesis in transgenic Arabidopsis. Proc Natl Acad Sci USA 106: 5996-6001.
16. Doerge RW (2002) Mapping and analysis of quantitative trait loci in experimental populations. Nat Genet 3: 43-52.
17. Faris JD, Fellers JP, Brooks SA, Gill BS (2003) A bacterial artificial chromosome contig spanning the major domestication locus Q in wheat and identification of a candidate gene. Genetics 164: 311321.
18. Fincher GB (2009) Exploring the evolution of (1, 3; 1, 4)-B-D-glucan in plant cell walls: comparative genomics can help. Curr Opin Plant Biol 12: 140-147.
19. Fincher GB, Stone BA (1986) Cell walls and their components: Cereal grain technology, vol 8. American Association of Cereal Chemists, St. Paul, MN, pp 207-295.
20. th Int Wheat Genet Symp. China Agricultural Scientech Press, Beijing, pp 29-40.
21. Groos C, Robert N, Bervas E, Charmet G (2003) Genetic analysis of grain protein-content, grain yield and thousand kernel weight in bread wheat. Theor Appl Genet 106: 1032-1040.
22. Hanocq E, Niarquin M, Heumez E, Rousset M, Le Gouis J (2004) Detection and mapping of QTL for earliness components in a bread wheat recombinant inbred lines population. Theor Appl Genet 110: 106-115.
23. Hozova B, Kuniak L, Moravcikova P, Gajdosova A (2007) Determination of water-insoluable b-d-glucan in the whole grain cereals and pseudocereals. Czech J Food Sci 25: 316-324.
24. Jantasuriyarat C, Vales MI, Watson CJW, Riera-Lizarazu O (2004) Identification and mapping of genetic loci affecting the free-threshing habit and spike compactness in wheat (Triticum aestivum L.). Theor Appl Genet 108: 261-273.
25. Jofuku DK, Omidyar PK, Gee Z, Okamuro JK (2005) Control of seed mass and seed yield by the floral homeotic gene APETALA2. Proc Natl Acad Sci USA 102: 3117-3122.
26. Johnson EB, Nalam VJ, Zemetra RS, Riera-Lizarazu O (2008) Mapping the compactum locus in wheat (Triticum aestivum L.) and its relationship to other spike morphology genes of the Triticeae. Euphytica 163: 193-201.
27. Kato K, Wada T (1999) Genetic analysis and selection experiment for narrow-sense earliness in wheat by using segregating hybrid progenies. Breed Sci 49: 233-238.
28. Kato K, Yamagata H (1988) Evaluation of chilling requirement and narrow-sense earliness of wheat cultivars. Jpn J Breed 38: 172-186.
29. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
30. Lander ES, Green P, Abrahamson J, Barlow A, Daley M, Lincoln S, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
31. Law CN, Suarez E, Miller TE, Worland AJ (1998) The influence of the group 1 chromosomes of wheat on ear-emergence times and their involvement with vernalization and day length. Heredity 80: 83-91.
32. Levinson G, Gutman GA (1987) Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol 4: 203-221.
33. Liu Y, Tsunewaki K (1991) Restriction fragment length polymorphism (RFLP) in wheat. II. linkage maps of the RFLP sites in common wheat. Jpn J Genet 66: 617-633.
34. Marshall DR, Ellison FW, Mares DJ (1984) Effects of grain shape and size on milling yields in wheat. I. Theoretical analysis based on simple geometric models. Aust J Agric Res 35: 619-630.
35. Marza F, Bai GH, Carver BF, Zhou WC (2006) Quantitative trait loci for yield and related traits in the wheat population Ning 7840 x Clark. Theor Appl Genet 112: 688-698.
36. Messmer MM, Keller M, Zanetti S, Keller B (1999) Genetic linkage map of wheat x spelt cross. Theor Appl Genet 98: 1163-1170.
37. Muramatsu M (1963) Dosage effect of the spelta gene q of hexaploid wheat. Genetics 48: 469-482.
38. Muramatsu M (1986) The vulgare super gene, Q: its universality in durum wheat and its phenotypic effects in tetraploid and hexaploid wheat. Can J Genet Cytol 28: 30-41.
39. Nelson JC, Sorrels ME, van Deynze AE, Lu YH, Atkinson M, Bernard M, Leroy P, Farris JD, Anderson JA (1995) Molecular mapping of wheat: major genes and rearrangements in homoeologous groups 4, 5, and 7. Genetics 141: 721-731.
40. Nemeth C, Freeman J, Jones HD, Sparks C, Pellny TK, Wilkinson MD, Dunwell J, Andersson AAM, Aman P, Guillon F, Saulnier L, Mitchell RAC, Shewry PR (2010) Down-regulation of the CSLF6 gene results in decreased (1, 3; 1, 4)-b-D-Glucan in endosperm of Wheat. Plant Physiol 152: 1209-1218.
41. Paillard S, Schnurbusch T, Winzeler M, Messmer M, Sourdille P, Abderhalden O, Keller B, Schachermayr G (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.). Theor Appl Genet 107: 1235-1242.
42. Peng J, Ronin Y, Fahima T, Roder MS, Li Y, Nevo E, Korol A (2003) Domestication quantitative trait loci in Triticum dicoccoides, the progenitor of wheat. Proc Natl Acad Sci USA 100: 2489-2494.
43. Pestsova E, Roder MS (2002) Microsatellite analysis of wheat chromosome 2D allows the reconstruction of chromosomal inheritance in pedigrees of breeding programmes. Theor Appl Genet 106: 84-91.
44. Pestsova E, Ganal MW, Roder MS (2000) Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43: 689-697.
45. Phillips RL, Vasil IK (2001) DNA-based markers in plants. Kluwer Academic, Dordrech, The Netherlands.
46. Quarrie SA, Steed A, Calestani C, Semikhodskii A, Lebreton C (2005) A high-density genetic map of hexaploid wheat (Triticum aestivum L.) from the cross Chinese Spring x SQ1 and its use to compare QTLs for grain yield across a range of environments. Theor Appl Genet 110: 865-880.
47. Roder MS, Korzun V, Wandehake K, Planschke J, Tixier MH, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023.
48. Saghai-Maroof MA, Soliman KM, Jorgensen AR, Allard RW (1984) Ribosomal DNA spacer length polymorphism in barley: mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
49. Shah MM, Baenziger PS, Yen Y, Gill KS, Moreno-Sevilla B, Haliloglu K (1999) Genetic analysis of agronomic traits controlled by wheat chromosome 3A. Crop Sci 39: 1016-1021.
50. Shindo C, Tsujimoto H, Sasakuma T (2003) Segregation analysis of heading traits in hexaploid wheat utilizing recombinant inbred lines. Heredity 90: 56-63.
51. Simons KJ, Fellers JP, Trick HN, Zhang Z, TaiY S, Gill BS, Faris JD (2006) Molecular characterization of the major wheat domestication gene Q. Genetics 172: 547-555.
52. Sourdille P, Tixier MH, Charmet G, Gay G, Cadalen T, Bernard S, Bernard M (2000) Location of genes involving in ear compactness in wheat (Triticum aestivum) by means of molecular markers. Mol Breed 6: 247-255.
53. Sourdille P, Cadalen T, Guyomarc'h H, Snape JW, Perretant MR, Charmet G, Boeuf C, Bernard S, Bernard M (2003) An update of the Courtot x Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat. Theor Appl Genet 106: 530-538.
54. Suenaga K, Khairallah M, William HM, Koisington DA (2005) A new intervarietal linkage map and its application for quantitative trait locus analysis of 'gigas' features in bread wheat. Genome 48: 65-75.
55. Tonooka T, Aoki E, Yoshioka T, Taketa S (2009) A novel mutant gene for (1-3, 1-4)-β-D-glucanless grain on barley (Hordeum vulgare L.) chromosome 7H. Breed Sci 59: 47-54.
56. Torada A, Koike M, Mochida K, Ogihara Y (2006) SSR-based linkage map with new markers using an intraspecific population of common wheat. Theor Appl Genet 112: 1042-1051.
57. Varshney RK, Prasad M, Roy JK, Kumar N, Singh H, Dhaliwal HS, Balyan HS, Gupta PK (2000) Identification of eight chromosomes and a microsatellite marker on 1AS associated with QTLs for grain weight in bread wheat. Theor Appl Genet 100: 1290-1294.
58. Wang S, Basten CJ, Zeng ZB (2007) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh, NC (http://statgen. ncsu. edu/qtlcart/WQTLCart.htm).