SSR-based linkage map with new markers using an intraspecific population of common wheat

Theoretical and Applied Genetics

Volumn 112, Issue 6, 2006, Pages 1042-1051

  Torada, Atsushi ^a   Koike, Michiya ^a   Mochida, Keiichi ^b   Ogihara, Yasunari ^c  

^a Hokkaido Green Bio Institute   (Japan)

^b RIKEN   (Japan)

^c KYOTO PREFECTURAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; DATABASE SYSTEMS; GENES; GENETIC ENGINEERING; MORPHOLOGY; NUCLEIC ACIDS;

ACCURATE AMPLIFICATION PRODUCTS; ALLOPLOIDY; EXPRESSED SEQUENCE TAGS (EST); LINKAGE MAP; SIMPLE SEQUENCE REPEATS (SSR);

PLANTS (BOTANY);

MICROSATELLITE DNA; PLANT DNA;

ARTICLE; CHROMOSOME MAP; EXPRESSED SEQUENCE TAG; GENE; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GENOME; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; HAPLOIDY; PLANT CHROMOSOME; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE STRAND CONFORMATION POLYMORPHISM; VARIABLE NUMBER OF TANDEM REPEAT; WHEAT;

CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; EXPRESSED SEQUENCE TAGS; GENES, PLANT; GENETIC MARKERS; GENOME, PLANT; GENOTYPE; HAPLOIDY; LINKAGE (GENETICS); MICROSATELLITE REPEATS; MINISATELLITE REPEATS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; TRITICUM;

ANATOMY; CHROMOSOMES; DATA BASES; GENETIC ENGINEERING; GENOTYPES; NUCLEIC ACIDS; NUCLEOTIDES; WHEAT;

TRITICUM; TRITICUM AESTIVUM;

EID: 33645413218     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-006-0206-5     Document Type: Article

References (30)

1. Becker J, Heun M (1995) Barley microsatellites: allele variation and mapping. Plant Mol Biol 27:835-845
2. Cho YG, Ishii T, Temnykh S, Chen X, Lipovich L, MacCouch SR, Park WD, Ayres N, Cartinhour S (2000) Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). Theor Appl Genet 100:713-722
3. Cregan PB, Mudge J, Fickus EW, Marek LF, Danesh D, Denny R, Shoemaker RC, Matthews BF, Jarvil T, Young ND (1999) Targeted isolation of simple sequence repeat markers through the use of bacterial artificial chromosomes. Theor Appl Genet 98:919-928
4. Eujayl I, Sorrells ME, Baum M, Wolters P, Powell W (2002) Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat. Theor Appl Genet 104:399-407
5. Gao LF, Jing RL, Huo NX, Li Y, Li XP, Zhou RH, Chang XP, Tang JF, Ma ZY, Jia JZ (2004) One hundred and one new microsatellite loci derived from ESTs (EST-SSRs) in bread wheat. Theor Appl Genet 108:1392-1400
6. Groos C, Gay G, Perretant MR, Gervais L, Bernard M, Dedryver F, Charmet D (2002) Study of the relationship between pre-harvest sprouting and grain color by quantitative trait loci analysis in a white x red grain bread wheat cross. Theor Appl Genet 104:39-47
7. Gupta PK, Balyan HS, Edwards KJ, Isaac P, Korzun V, Rôder M, Gautier MF, Joudrier P, Schlatter AR, Dubcovsky J, DelaPena RC, Khairallah M, Penner G, Hayden MJ, Sharp P, Keller B, Wang RCC, Hardouin JP, Jack P, Leroy P (2002) Genetic mapping of 66 new microsatellite(SSR) loci in bread wheat. Theor Appl Genet 105:413-422
8. Guyomarc'h H, Sourdille P, Charmet G, Edwards KJ, Bernard M (2002) Characterization of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat. Theor Appl Genet 104:1164-1172
9. Kantety RV, LaRota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48:501-510
10. Kosambi DD (1944) The estimation of map distance from recombination values. Ann Eugen 12:172-175
11. Lander ES, Green P, Abrahamson J (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
12. Ma ZQ, Rôder M, Sorrells ME (1996) Frequencies and sequence characteristics of di-, tri-, and tetra-nucleotide microsatellites in wheat. Genome 39:123-130
13. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, DeClerck G, Schneider D, Cartinhour S, Ware D, Stein L (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9:199-207
14. Nicot N, Chiquet V, Gandon B, Amilhat L, Legeai F, Leroy P, Bernard M, Sourdille P (2004) Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs). Theor Appl Genet 109:800-805
15. Ogihara Y, Mochida K, Nemoto Y, Murai K, Yamazaki Y, Shin-I T, Kohara Y (2003) Correlated clustering and virtual display of gene expression patterns in the wheat life cycle by large-scale statistical analyses of expressed sequenced tags. Plant J 33:1001-1011
16. Paillard S, Schnurbusch T, Winzaler M, Messmer M, Sourdille P, Abderhalden O, Keller B, Schachermayr G (2003) An integrative genetic linkage map of winter wheat (Triticum aestivum L.). Theor Appl Genet 107:1235-1242
17. Peng JH, Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5:80-96
18. Pestsova E, Ganal MW, Rôder M (2000) Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43:689-697
19. Ramsay L, Macaulay M, Degli Ivanissevich S, MacLean K, Cardle L, Fuller J, Edward KJ, Tuvesson S, Morgante M, Massari A, Maestri E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R (2000) A simple sequence repeat-based linkage map of barley. Genetics 156:1997-2005
20. Rôder M, Plaschke J, König SU, Börner A, Sorrells ME, Tanksley SD, Ganal MW (1995) Abubdance, variability and chromosomal location of microsatellites in wheat. Mol Gen Genet 246:327-333
21. Rôder M, Korzun V, Wendehake K, Plaschke J, Tixer MH, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007-2023
22. Sharopova N, McMullen MD, Schultz L, Schroeder S, SanchezVilleda H, Gardiner J, Bergstorm D, Houchins K, Melia-Hancock S, Musket T, Duru N, Polacco M, Edwards K, Ruff T, Register JC, Brouwer C, Thompson R, Velasco R, Chin E, Lee M, Woodman-Clikeman W, Long MJ, Liscum E, Cone K, Davis G, Coe Jr EH (2002) Development and mapping of SSR markers for maize. Plant Mol Biol 48:463-481
23. Somers DJ, Isaac P, Edwards K (2004) A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.). Theor Appl Genet 109:1105-1114
24. Song QJ, Fickus EW, Cregan PB (2002) Characterization of tri-nucleotide SSR motifs in wheat. Theor Appl Genet 104:286-293
25. Song QJ, Shi JR, Singh S, Fickus EW, Costa JM, Lewis J, Gill BS, Ward R, Cregan PB (2005) Development and mapping of microsatellite (SSR) markers in wheat. Theor Appl Genet 110:550-560
26. Sourdille P, Tavaud M, Charmet G, Bernard M (2001) Trasferability of wheat microsatellite to diploid Triticeae species carrying the A, B and D genome. Theor Appl Genet 103:346-352
27. Sourdille P, Cadalen T, Guyomarc'h H, Snape JW, Perretant MR, Charmet G, Boeuf C, Bernard S, Bernard M (2003) An update of the Courtot X Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat. Theor Appl Genet 106:530-538
28. Suenaga K, Nakajima K (1989) Efficient production of haploid wheat (Triticum aestivum L.) through crosses between Japanese wheat and maize (Zea mays). Plant Cell Rep 8:263-266
29. Yu JK, LaRota M, Kantety RV, Sorrells ME (2004a) EST derived SSR markers for comparative mapping in wheat and rice. Mol Gen Genet 271:742-751
30. Yu JK, Dake TM, Shingh S, Benscher D, Li W, Gill B, Sorrells ME (2004b) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47:805-818