-
1
-
-
0346991745
-
Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda
-
1:CAS:528:DC%2BD2cXmsVKmtw%3D%3D 14668377
-
D Bachtrog 2003 Protein evolution and codon usage bias on the neo-sex chromosomes of Drosophila miranda Genetics 165 1221 1232 1:CAS:528: DC%2BD2cXmsVKmtw%3D%3D 14668377
-
(2003)
Genetics
, vol.165
, pp. 1221-1232
-
-
Bachtrog, D.1
-
2
-
-
73249131172
-
A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae
-
1:CAS:528:DC%2BD1MXhsFGqtbfE 10.1101/gr.096297.109 19801530
-
LE Berchowitz SE Hanlon JD Lieb GP Copenhaver 2009 A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae Genome Res 19 2245 2257 1:CAS:528:DC%2BD1MXhsFGqtbfE 10.1101/gr.096297.109 19801530
-
(2009)
Genome Res
, vol.19
, pp. 2245-2257
-
-
Berchowitz, L.E.1
Hanlon, S.E.2
Lieb, J.D.3
Copenhaver, G.P.4
-
3
-
-
58849161775
-
Hotspots of biased nucleotide substitutions in human genes
-
10.1371/journal.pbio.1000026 19175294
-
J Berglund KS Pollard MT Webster 2009 Hotspots of biased nucleotide substitutions in human genes PLoS Biol 7 e26 10.1371/journal.pbio.1000026 19175294
-
(2009)
PLoS Biol
, vol.7
, pp. 26
-
-
Berglund, J.1
Pollard, K.S.2
Webster, M.T.3
-
5
-
-
67149120080
-
Reduced effectiveness of selection caused by a lack of recombination
-
1:CAS:528:DC%2BD1MXltFWit7s%3D 10.1016/j.cub.2009.02.039 19285399
-
AJ Betancourt JJ Welch Charlesworth 2009 Reduced effectiveness of selection caused by a lack of recombination Curr Biol 19 655 660 1:CAS:528:DC%2BD1MXltFWit7s%3D 10.1016/j.cub.2009.02.039 19285399
-
(2009)
Curr Biol
, vol.19
, pp. 655-660
-
-
Betancourt, A.J.1
Welch, J.J.2
Charlesworthss3
-
6
-
-
58749092121
-
Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites
-
1:CAS:528:DC%2BD1cXhsVylsbzJ 10.1038/emboj.2008.257 19078966
-
V Borde N Robine W Lin S Bonfils V Geli A Nicolas 2009 Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites EMBO J 28 99 111 1:CAS:528:DC%2BD1cXhsVylsbzJ 10.1038/emboj.2008.257 19078966
-
(2009)
EMBO J
, vol.28
, pp. 99-111
-
-
Borde, V.1
Robine, N.2
Lin, W.3
Bonfils, S.4
Geli, V.5
Nicolas, A.6
-
7
-
-
69849115535
-
Distinct histone modifications define initiation and repair of meiotic recombination in the mouse
-
1:CAS:528:DC%2BD1MXht1amtrjL 10.1038/emboj.2009.207 19644444
-
J Buard P Barthes C Grey B de Massy 2009 Distinct histone modifications define initiation and repair of meiotic recombination in the mouse EMBO J 28 2616 2624 1:CAS:528:DC%2BD1MXht1amtrjL 10.1038/emboj.2009.207 19644444
-
(2009)
EMBO J
, vol.28
, pp. 2616-2624
-
-
Buard, J.1
Barthes, P.2
Grey, C.3
De Massy, B.4
-
8
-
-
34249804498
-
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
-
DOI 10.1038/ng2049, PII NG2049
-
VR Chintapalli J Wang JA Dow 2007 Using FlyAtlas to identify better Drosophila melanogaster models of human disease Nat Genet 39 715 720 1:CAS:528:DC%2BD2sXlvVSgtLo%3D 10.1038/ng2049 17534367 (Pubitemid 46848596)
-
(2007)
Nature Genetics
, vol.39
, Issue.6
, pp. 715-720
-
-
Chintapalli, V.R.1
Wang, J.2
Dow, J.A.T.3
-
9
-
-
3843068862
-
Selective and mutational patterns associated with gene expression in humans: Influences on synonymous composition and intron presence
-
DOI 10.1534/genetics.104.026351
-
JM Comeron 2004 Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence Genetics 167 1293 1304 1:CAS:528:DC%2BD2cXnt1Gju74%3D 10.1534/genetics.104. 026351 15280243 (Pubitemid 39045637)
-
(2004)
Genetics
, vol.167
, Issue.3
, pp. 1293-1304
-
-
Comeron, J.M.1
-
10
-
-
41949094076
-
Global chromatin domain organization of the Drosophila genome
-
DOI 10.1371/journal.pgen.1000045
-
E de Wit U Braunschweig F Greil HJ Bussemaker B van Steensel 2008 Global chromatin domain organization of the Drosophila genome PLoS Genet 4 e1000045 10.1371/journal.pgen.1000045 18369463 (Pubitemid 351507864)
-
(2008)
PLoS Genetics
, vol.4
, Issue.3
-
-
De Wit, E.1
Braunschweig, U.2
Greil, F.3
Bussemaker, H.J.4
Van Steensel, B.5
-
11
-
-
70350236484
-
Biased gene conversion and the evolution of mammalian genomic landscapes
-
1:CAS:528:DC%2BD1MXht12qsrvF 10.1146/annurev-genom-082908-150001 19630562
-
L Duret N Galtier 2009 Biased gene conversion and the evolution of mammalian genomic landscapes Annu Rev Genomics Hum Genet 10 285 311 1:CAS:528:DC%2BD1MXht12qsrvF 10.1146/annurev-genom-082908-150001 19630562
-
(2009)
Annu Rev Genomics Hum Genet
, vol.10
, pp. 285-311
-
-
Duret, L.1
Galtier, N.2
-
12
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
DOI 10.1073/pnas.96.8.4482
-
L Duret D Mouchiroud 1999 Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, Arabidopsis Proc Natl Acad Sci USA 96 4482 4487 1:CAS:528:DyaK1MXjs1yls7Y%3D 10.1073/pnas.96.8.4482 10200288 (Pubitemid 29190362)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.8
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
13
-
-
0033977618
-
Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
-
1:CAS:528:DC%2BD3cXotF2quw%3D%3D 10666707
-
L Duret D Mouchiroud 2000 Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate Mol Biol Evol 17 68 74 1:CAS:528:DC%2BD3cXotF2quw%3D%3D 10666707
-
(2000)
Mol Biol Evol
, vol.17
, pp. 68-74
-
-
Duret, L.1
Mouchiroud, D.2
-
14
-
-
0035407214
-
The evolution of isochores
-
DOI 10.1038/35080577
-
A Eyre-Walker LD Hurst 2001 The evolution of isochores Nat Rev Genet 2 549 555 1:CAS:528:DC%2BD3MXltVCksb8%3D 10.1038/35080577 11433361 (Pubitemid 33674028)
-
(2001)
Nature Reviews Genetics
, vol.2
, Issue.7
, pp. 549-555
-
-
Eyre-Walker, A.1
Hurst, L.D.2
-
15
-
-
34248641119
-
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
-
DOI 10.1016/j.tig.2007.03.011, PII S0168952507001138
-
N Galtier L Duret 2007 Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution Trends Genet 23 273 277 1:CAS:528:DC%2BD2sXlvVOnu70%3D 10.1016/j.tig.2007.03.011 17418442 (Pubitemid 46770896)
-
(2007)
Trends in Genetics
, vol.23
, Issue.6
, pp. 273-277
-
-
Galtier, N.1
Duret, L.2
-
16
-
-
58149328496
-
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
-
1:CAS:528:DC%2BD1MXosVSksg%3D%3D 10.1016/j.tig.2008.10.011 19027980
-
N Galtier L Duret S Glemin V Ranwez 2009 GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates Trends Genet 25 1 5 1:CAS:528:DC%2BD1MXosVSksg%3D%3D 10.1016/j.tig.2008.10.011 19027980
-
(2009)
Trends Genet
, vol.25
, pp. 1-5
-
-
Galtier, N.1
Duret, L.2
Glemin, S.3
Ranwez, V.4
-
17
-
-
0037380022
-
Transcription-associated mutational asymmetry in mammalian evolution
-
DOI 10.1038/ng1103
-
P Green B Ewing W Miller PJ Thomas NCS Program ED Green 2003 Transcription-associated mutational asymmetry in mammalian evolution Nat Genet 33 514 517 1:CAS:528:DC%2BD3sXisVGisbc%3D 10.1038/ng1103 12612582 (Pubitemid 36390015)
-
(2003)
Nature Genetics
, vol.33
, Issue.4
, pp. 514-517
-
-
Green, P.1
Ewing, B.2
Miller, W.3
Thomas, P.J.4
Thomas, J.5
Touchman, J.6
Blakesley, R.7
Bouffard, G.8
Beckstrom-Sternberg, S.9
McDowell, J.10
Maskeri, B.11
Smit, A.12
Haussler, D.13
Green, E.D.14
-
18
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
DOI 10.1016/j.cell.2007.05.042, PII S0092867407006812
-
MG Guenther SS Levine LA Boyer R Jaenisch RA Young 2007 A chromatin landmark and transcription initiation at most promoters in human cells Cell 130 77 88 1:CAS:528:DC%2BD2sXotlGmtrk%3D 10.1016/j.cell.2007.05.042 17632057 (Pubitemid 47031323)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
19
-
-
46949087998
-
Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila
-
DOI 10.1098/rsbl.2008.0174, PII G355N8573486461N
-
PR Haddrill B Charlesworth 2008 Non-neutral processes drive the nucleotide composition of non-coding sequences in Drosophila Biol Lett 4 438 441 1:CAS:528:DC%2BD1cXhtFSks7nK 10.1098/rsbl.2008.0174 18505714 (Pubitemid 351961473)
-
(2008)
Biology Letters
, vol.4
, Issue.4
, pp. 438-441
-
-
Haddrill, P.R.1
Charlesworth, B.2
-
20
-
-
58149267853
-
Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over
-
10.1098/rsbl.2008.0376 18782733
-
PR Haddrill FM Waldron B Charlesworth 2008 Elevated levels of expression associated with regions of the Drosophila genome that lack crossing over Biol Lett 4 758 761 10.1098/rsbl.2008.0376 18782733
-
(2008)
Biol Lett
, vol.4
, pp. 758-761
-
-
Haddrill, P.R.1
Waldron, F.M.2
Charlesworth, B.3
-
21
-
-
0036188913
-
Interactions between natural selection, recombination and gene density in the genes of Drosophila
-
1:CAS:528:DC%2BD38XitlWrs7w%3D 11861564
-
J Hey RM Kliman 2002 Interactions between natural selection, recombination and gene density in the genes of Drosophila Genetics 160 595 608 1:CAS:528:DC%2BD38XitlWrs7w%3D 11861564
-
(2002)
Genetics
, vol.160
, pp. 595-608
-
-
Hey, J.1
Kliman, R.M.2
-
22
-
-
34548396264
-
Human gene organization driven by the coordination of replication and transcription
-
DOI 10.1101/gr.6533407
-
M Huvet S Nicolay M Touchon B Audit Y d'Aubenton-Carafa A Arneodo C Thermes 2007 Human gene organization driven by the coordination of replication and transcription Genome Res 17 1278 1285 1:CAS:528:DC%2BD2sXhtValu7nN 10.1101/gr.6533407 17675363 (Pubitemid 47360902)
-
(2007)
Genome Research
, vol.17
, Issue.9
, pp. 1278-1285
-
-
Huvet, M.1
Nicolay, S.2
Touchon, M.3
Audit, B.4
D'Aubenton-Carafa, Y.5
Arneodo, A.6
Thermes, C.7
-
23
-
-
48249092245
-
Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence
-
1:CAS:528:DC%2BD1cXptFKju74%3D 10.1073/pnas.0801848105 18621713
-
RJ Kulathinal SM Bennettt CL Fitzpatrick MAF Noor 2008 Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence Proc Natl Acad Sci USA 105 10051 10056 1:CAS:528:DC%2BD1cXptFKju74%3D 10.1073/pnas.0801848105 18621713
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 10051-10056
-
-
Kulathinal, R.J.1
Bennettt, S.M.2
Fitzpatrick, C.L.3
Noor, M.A.F.4
-
24
-
-
39749084483
-
Evolution of protein-coding genes in Drosophila
-
1:CAS:528:DC%2BD1cXislKhtrY%3D 10.1016/j.tig.2007.12.001 18249460
-
AM Larracuente TB Sackton AJ Greenberg A Wong ND Singh D Sturgill Y Zhang B Oliver AG Clark 2008 Evolution of protein-coding genes in Drosophila Trends Genet 24 114 123 1:CAS:528:DC%2BD1cXislKhtrY%3D 10.1016/j.tig.2007.12.001 18249460
-
(2008)
Trends Genet
, vol.24
, pp. 114-123
-
-
Larracuente, A.M.1
Sackton, T.B.2
Greenberg, A.J.3
Wong, A.4
Singh, N.D.5
Sturgill, D.6
Zhang, Y.7
Oliver, B.8
Clark, A.G.9
-
25
-
-
0036613754
-
Clustering of housekeeping genes provides a unified model of gene order in the human genome
-
1:CAS:528:DC%2BD38XktVKgtrw%3D 10.1038/ng887 11992122
-
MJ Lercher AO Urrutia LD Hurst 2002 Clustering of housekeeping genes provides a unified model of gene order in the human genome Nat Genet 31 180 183 1:CAS:528:DC%2BD38XktVKgtrw%3D 10.1038/ng887 11992122
-
(2002)
Nat Genet
, vol.31
, pp. 180-183
-
-
Lercher, M.J.1
Urrutia, A.O.2
Hurst, L.D.3
-
26
-
-
33749579409
-
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins
-
DOI 10.1093/molbev/msl076
-
BY Liao NM Scott JZ Zhang 2006 Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins Mol Biol Evol 23 2072 2080 1:CAS:528:DC%2BD28XhtFWgt7jO 10.1093/molbev/msl076 16887903 (Pubitemid 44536815)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.11
, pp. 2072-2080
-
-
Liao, B.-Y.1
Scott, N.M.2
Zhang, J.3
-
27
-
-
0042887665
-
Dependence of mutational asymmetry on gene-expression levels in the human genome
-
DOI 10.1086/378134
-
J Majewski 2003 Dependence of mutational asymmetry on gene-expression levels in the human genome Am J Hum Genet 73 688 692 1:CAS:528: DC%2BD3sXnt1WqsL0%3D 10.1086/378134 12881777 (Pubitemid 37076284)
-
(2003)
American Journal of Human Genetics
, vol.73
, Issue.3
, pp. 688-692
-
-
Majewski, J.1
-
28
-
-
47949108144
-
High-resolution mapping of meiotic crossovers and non-crossovers in yeast
-
1:CAS:528:DC%2BD1cXovV2mtb4%3D 10.1038/nature07135 18615017
-
E Mancera R Bourgon A Brozzi W Huber LM Steinmetz 2008 High-resolution mapping of meiotic crossovers and non-crossovers in yeast Nature 454 479 485 1:CAS:528:DC%2BD1cXovV2mtb4%3D 10.1038/nature07135 18615017
-
(2008)
Nature
, vol.454
, pp. 479-485
-
-
Mancera, E.1
Bourgon, R.2
Brozzi, A.3
Huber, W.4
Steinmetz, L.M.5
-
29
-
-
0037648944
-
Neutral effect of recombination on base composition in Drosophila
-
DOI 10.1017/S0016672302006079
-
G Marais D Mouchiroud L Duret 2003 Neutral effect of recombination on base composition in Drosophila Genet Res 81 79 87 1:CAS:528:DC%2BD3sXjtl2ksbY%3D 10.1017/S0016672302006079 12872909 (Pubitemid 36575831)
-
(2003)
Genetical Research
, vol.81
, Issue.2
, pp. 79-87
-
-
Marais, G.1
Mouchiroud, D.2
Duret, L.3
-
30
-
-
78649284973
-
Genomic signatures of germline gene expression
-
doi:10.1101/gr.106666.110;Epubdate2010/08/06
-
McVicker G, Green P (2010) Genomic signatures of germline gene expression. Genome Res: doi: 10.1101/gr.106666.110 ; Epub date 2010/08/06
-
(2010)
Genome Res
-
-
McVicker, G.1
Green, P.2
-
31
-
-
77958453261
-
Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes
-
1:CAS:528:DC%2BC3cXjsFahtrg%3D 10.1093/gbe/evp056 20333222
-
CF Mugal JB Wolf HH von Grunberg H Ellegren 2010 Conservation of neutral substitution rate and substitutional asymmetries in mammalian genes Genome Biol Evol 2 19 28 1:CAS:528:DC%2BC3cXjsFahtrg%3D 10.1093/gbe/evp056 20333222
-
(2010)
Genome Biol Evol
, vol.2
, pp. 19-28
-
-
Mugal, C.F.1
Wolf, J.B.2
Von Grunberg, H.H.3
Ellegren, H.4
-
33
-
-
62349104090
-
The relationship between DNA replication and human genome organization
-
1:CAS:528:DC%2BD1MXjt1Clu7s%3D 10.1093/molbev/msn303 19126867
-
A Necsulea C Guillet J-C Cadoret M-N Prioleau L Duret 2009 The relationship between DNA replication and human genome organization Mol Biol Evol 26 729 741 1:CAS:528:DC%2BD1MXjt1Clu7s%3D 10.1093/molbev/msn303 19126867
-
(2009)
Mol Biol Evol
, vol.26
, pp. 729-741
-
-
Necsulea, A.1
Guillet, C.2
Cadoret, J.-C.3
Prioleau, M.-N.4
Duret, L.5
-
34
-
-
70450157442
-
Monoallelic expression and tissue specificity are associated with high crossover rates
-
1:CAS:528:DC%2BD1MXhsV2gsLzN 10.1016/j.tig.2009.10.001 19850368
-
A Necsulea M Semon L Duret LD Hurst 2009 Monoallelic expression and tissue specificity are associated with high crossover rates Trends Genet 25 519 522 1:CAS:528:DC%2BD1MXhsV2gsLzN 10.1016/j.tig.2009.10.001 19850368
-
(2009)
Trends Genet
, vol.25
, pp. 519-522
-
-
Necsulea, A.1
Semon, M.2
Duret, L.3
Hurst, L.D.4
-
35
-
-
0034978556
-
Highly expressed genes in yeast evolve slowly
-
1:CAS:528:DC%2BD3MXltFSitr4%3D 11430355
-
C Pal B Papp LD Hurst 2001 Highly expressed genes in yeast evolve slowly Genetics 158 927 931 1:CAS:528:DC%2BD3MXltFSitr4%3D 11430355
-
(2001)
Genetics
, vol.158
, pp. 927-931
-
-
Pal, C.1
Papp, B.2
Hurst, L.D.3
-
36
-
-
33846990531
-
Splicing and the evolution of proteins in mammals
-
1:CAS:528:DC%2BD2sXhslOqs78%3D 10.1371/journal.pbio.0050014
-
JL Parmley AO Urrutia L Potrzebowski H Kaessmann LD Hurst 2007 Splicing and the evolution of proteins in mammals PLoS Biol 5 343 353 1:CAS:528:DC%2BD2sXhslOqs78%3D 10.1371/journal.pbio.0050014
-
(2007)
PLoS Biol
, vol.5
, pp. 343-353
-
-
Parmley, J.L.1
Urrutia, A.O.2
Potrzebowski, L.3
Kaessmann, H.4
Hurst, L.D.5
-
37
-
-
48949094603
-
Transcription induces strand-specific mutations at the 5′ end of human genes
-
1:CAS:528:DC%2BD1cXpsFOmsL0%3D 10.1101/gr.076570.108 18463301
-
P Polak PF Arndt 2008 Transcription induces strand-specific mutations at the 5′ end of human genes Genome Res 18 1216 1223 1:CAS:528: DC%2BD1cXpsFOmsL0%3D 10.1101/gr.076570.108 18463301
-
(2008)
Genome Res
, vol.18
, pp. 1216-1223
-
-
Polak, P.1
Arndt, P.F.2
-
39
-
-
24944577454
-
Recombination enhances protein adaptation in Drosophila melanogaster
-
DOI 10.1016/j.cub.2005.07.065, PII S0960982205008912
-
DC Presgraves 2005 Recombination enhances protein adaptation in Drosophila melanogaster Curr Biol 15 1651 1656 1:CAS:528:DC%2BD2MXhtVWnsLvF 10.1016/j.cub.2005.07.065 16169487 (Pubitemid 41323743)
-
(2005)
Current Biology
, vol.15
, Issue.18
, pp. 1651-1656
-
-
Presgraves, D.C.1
-
40
-
-
63849094762
-
HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination
-
1:CAS:528:DC%2BD1MXksVKns7g%3D 10.1101/gr.086181.108 19158364
-
MI Sigurdsson AV Smith HT Bjornsson JJ Jonsson 2009 HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination Genome Res 19 581 589 1:CAS:528:DC%2BD1MXksVKns7g%3D 10.1101/gr.086181.108 19158364
-
(2009)
Genome Res
, vol.19
, pp. 581-589
-
-
Sigurdsson, M.I.1
Smith, A.V.2
Bjornsson, H.T.3
Jonsson, J.J.4
-
41
-
-
67650318267
-
Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster
-
1:CAS:528:DC%2BD1MXotFCntrY%3D 10.1007/s00239-009-9250-5 19504037
-
ND Singh CF Aquadro AG Clark 2009 Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster J Mol Evol 69 42 53 1:CAS:528:DC%2BD1MXotFCntrY%3D 10.1007/s00239-009-9250-5 19504037
-
(2009)
J Mol Evol
, vol.69
, pp. 42-53
-
-
Singh, N.D.1
Aquadro, C.F.2
Clark, A.G.3
-
42
-
-
0003328368
-
Evidence for large domains of similarly expressed genes in the Drosophila genome
-
10.1186/1475-4924-1-5 12144710
-
PT Spellman GM Rubin 2002 Evidence for large domains of similarly expressed genes in the Drosophila genome J Biol 1 5 10.1186/1475-4924-1-5 12144710
-
(2002)
J Biol
, vol.1
, pp. 5
-
-
Spellman, P.T.1
Rubin, G.M.2
-
43
-
-
26944454054
-
Evidence for a preferential targeting of 3′-UTRs by cis-encoded natural antisense transcripts
-
DOI 10.1093/nar/gki852
-
M Sun LD Hurst GG Carmichael J Chen 2005 Evidence for a preferential targeting of 3′-UTRs by cis-encoded natural antisense transcripts Nucleic Acids Res 33 5533 5543 1:CAS:528:DC%2BD2MXhtFWltr3N 10.1093/nar/gki852 16204454 (Pubitemid 41548819)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.17
, pp. 5533-5543
-
-
Sun, M.1
Hurst, L.D.2
Carmichael, G.G.3
Chen, J.4
-
44
-
-
33745607884
-
Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity
-
DOI 10.1101/gr.5210006
-
M Sun LD Hurst GG Carmichael J Chen 2006 Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity Genome Res 16 922 933 1:CAS:528:DC%2BD28XmvVCgt78%3D 10.1101/gr.5210006 16769979 (Pubitemid 43992916)
-
(2006)
Genome Research
, vol.16
, Issue.7
, pp. 922-933
-
-
Sun, M.1
Hurst, L.D.2
Carmichael, G.G.3
Chen, J.4
-
45
-
-
0036363646
-
Mechanisms of transcription-coupled DNA repair
-
DOI 10.1038/nrm703
-
JQ Svejstrup 2002 Mechanisms of transcription-coupled DNA repair Nat Rev Mol Cell Biol 3 21 29 1:CAS:528:DC%2BD38XhtFGmsb0%3D 10.1038/nrm703 11823795 (Pubitemid 135709915)
-
(2002)
Nature Reviews Molecular Cell Biology
, vol.3
, Issue.1
, pp. 21-29
-
-
Svejstrup, J.Q.1
-
46
-
-
0035058768
-
Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes
-
1:CAS:528:DC%2BD3MXis1eisbk%3D 11264413
-
T Takano-Shimizu 2001 Local changes in GC/AT substitution biases and in crossover frequencies on Drosophila chromosomes Mol Biol Evol 18 606 619 1:CAS:528:DC%2BD3MXis1eisbk%3D 11264413
-
(2001)
Mol Biol Evol
, vol.18
, pp. 606-619
-
-
Takano-Shimizu, T.1
-
47
-
-
4644246096
-
Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes
-
DOI 10.1093/nar/gkh823
-
M Touchon A Arneodo Y d'Aubenton-Carafa C Thermes 2004 Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes Nucleic Acids Res 32 4969 4978 1:CAS:528:DC%2BD2cXotlWmtLc%3D 10.1093/nar/gkh823 15388799 (Pubitemid 39445483)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.17
, pp. 4969-4978
-
-
Touchon, M.1
Arneodo, A.2
D'Aubenton-Carafa, Y.3
Thermes, C.4
-
48
-
-
22244455429
-
Replication-associated strand asymmetries in mammalian genomes: Toward detection of replication origins
-
DOI 10.1073/pnas.0500577102
-
M Touchon S Nicolay B Audit EB Brodieof Brodie Y d'Aubenton-Carafa A Arneodo C Thermes 2005 Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins Proc Natl Acad Sci USA 102 9836 9841 1:CAS:528:DC%2BD2MXmsFaruro%3D 10.1073/pnas.0500577102 15985556 (Pubitemid 40993654)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.28
, pp. 9836-9841
-
-
Touchon, M.1
Nicolay, S.2
Audit, B.3
Brodieof Brodie, E.-B.4
D'Aubenton-Carafa, Y.5
Arneodo, A.6
Thermes, C.7
-
49
-
-
73649118486
-
Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes
-
10.1371/journal.pgen.1000731 19936020
-
MD Vibranovski HF Lopes TL Karr M Long 2009 Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes PLoS Genet 5 e1000731 10.1371/journal.pgen.1000731 19936020
-
(2009)
PLoS Genet
, vol.5
, pp. 1000731
-
-
Vibranovski, M.D.1
Lopes, H.F.2
Karr, T.L.3
Long, M.4
-
50
-
-
37549008368
-
Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster
-
1:CAS:528:DC%2BD1cXnsVGiuw%3D%3D 10.1093/molbev/msm210 17905999
-
T Warnecke LD Hurst 2007 Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster Mol Biol Evol 24 2755 2762 1:CAS:528: DC%2BD1cXnsVGiuw%3D%3D 10.1093/molbev/msm210 17905999
-
(2007)
Mol Biol Evol
, vol.24
, pp. 2755-2762
-
-
Warnecke, T.1
Hurst, L.D.2
-
51
-
-
43549084386
-
Finding exonic islands in a sea of non-coding sequence: Splicing related constraints on protein composition and evolution are common in intron-rich genomes
-
DOI 10.1186/gb-2008-9-2-r29
-
T Warnecke JL Parmley LD Hurst 2008 Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes Genome Biol 9 R29 10.1186/gb-2008-9-2-r29 18257921 (Pubitemid 351944000)
-
(2008)
Genome Biology
, vol.9
, Issue.2
-
-
Warnecke, T.1
Parmley, J.L.2
Hurst, L.D.3
-
52
-
-
78650006430
-
Protein rates of evolution are predicted by double-strand break events, independent of crossing-over rates
-
1:CAS:528:DC%2BC3cXjslaksb4%3D 10.1093/gbe/evp033 20333203
-
CC Weber LD Hurst 2009 Protein rates of evolution are predicted by double-strand break events, independent of crossing-over rates Genome Biol Evol 1 340 349 1:CAS:528:DC%2BC3cXjslaksb4%3D 10.1093/gbe/evp033 20333203
-
(2009)
Genome Biol Evol
, vol.1
, pp. 340-349
-
-
Weber, C.C.1
Hurst, L.D.2
-
53
-
-
4944229463
-
Gene expression, synteny, and local similarity in human noncoding mutation rates
-
DOI 10.1093/molbev/msh181
-
MT Webster NG Smith MJ Lercher H Ellegren 2004 Gene expression, synteny, and local similarity in human noncoding mutation rates Mol Biol Evol 21 1820 1830 1:CAS:528:DC%2BD2cXnvFejurk%3D 10.1093/molbev/msh181 15175414 (Pubitemid 39331630)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.10
, pp. 1820-1830
-
-
Webster, M.T.1
Smith, N.G.C.2
Lercher, M.J.3
Ellegren, H.4
-
54
-
-
0028206864
-
Meiosis-induced double-strand break sites determined by yeast chromatin structure
-
1:CAS:528:DyaK2cXhsFGksbY%3D 10.1126/science.8290959 8290959
-
TC Wu M Lichten 1994 Meiosis-induced double-strand break sites determined by yeast chromatin structure Science 263 515 518 1:CAS:528:DyaK2cXhsFGksbY%3D 10.1126/science.8290959 8290959
-
(1994)
Science
, vol.263
, pp. 515-518
-
-
Wu, T.C.1
Lichten, M.2
-
55
-
-
20144376345
-
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
-
DOI 10.1093/bioinformatics/bti042
-
I Yanai H Benjamin M Shmoish V Chalifa-Caspi M Shklar R Ophir A Bar-Even S Horn-Saban M Safran E Domany D Lancet O Shmueli 2005 Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification Bioinformatics 21 650 659 1:CAS:528:DC%2BD2MXhslSlt7c%3D 10.1093/bioinformatics/bti042 15388519 (Pubitemid 40424791)
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 650-659
-
-
Yanai, I.1
Benjamin, H.2
Shmoish, M.3
Chalifa-Caspi, V.4
Shklar, M.5
Ophir, R.6
Bar-Even, A.7
Horn-Saban, S.8
Safran, M.9
Domany, E.10
Lancet, D.11
Shmueli, O.12
-
56
-
-
65249090200
-
A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes
-
10.1186/1471-2148-9-55 19284596
-
L Yang J Yu 2009 A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes BMC Evol Biol 9 55 10.1186/1471-2148-9-55 19284596
-
(2009)
BMC Evol Biol
, vol.9
, pp. 55
-
-
Yang, L.1
Yu, J.2
-
57
-
-
24744453961
-
Positive correlation between evolutionary rate and recombination rate in Drosophila genes with male-biased expression
-
DOI 10.1093/molbev/msi189
-
Z Zhang J Parsch 2005 Positive correlation between evolutionary rate and recombination rate in Drosophila genes with male-biased expression Mol Biol Evol 22 1945 1947 1:CAS:528:DC%2BD2MXhtVGhur7M 10.1093/molbev/msi189 15944440 (Pubitemid 41298062)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.10
, pp. 1945-1947
-
-
Zhang, Z.1
Parsch, J.2
-
58
-
-
6344272229
-
Molecular evolution of sex-biased genes in Drosophila
-
DOI 10.1093/molbev/msh223
-
Z Zhang TM Hambuch J Parsch 2004 Molecular evolution of sex-biased genes in Drosophila Mol Biol Evol 21 2130 2139 1:CAS:528:DC%2BD2cXptVKnsL8%3D 10.1093/molbev/msh223 15282334 (Pubitemid 39391990)
-
(2004)
Molecular Biology and Evolution
, vol.21
, Issue.11
, pp. 2130-2139
-
-
Zhang, Z.1
Hambuch, T.M.2
Parsch, J.3
-
59
-
-
36049041622
-
Constraint and turnover in sex-biased gene expression in the genus Drosophila
-
DOI 10.1038/nature06323, PII NATURE06323
-
Y Zhang D Sturgill M Parisi S Kumar B Oliver 2007 Constraint and turnover in sex-biased gene expression in the genus Drosophila Nature 450 233 237 1:CAS:528:DC%2BD2sXht1yntrvF 10.1038/nature06323 17994089 (Pubitemid 350100545)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 233-237
-
-
Zhang, Y.1
Sturgill, D.2
Parisi, M.3
Kumar, S.4
Oliver, B.5
|