Characterization, phylogeny, alternative splicing and expression of Sox30 gene

BMC Molecular Biology

Volumn 11, Issue , 2010, Pages

  Han, Fei ^a   Wang, Zhijian ^a   Wu, Fengrui ^a   Liu, Zhihao ^a   Huang, Baofeng ^a   Wang, Deshou ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SOX 30; UNCLASSIFIED DRUG; TRANSCRIPTION FACTOR SOX;

ALTERNATIVE RNA SPLICING; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DATA BASE; FEMALE; GENE EXPRESSION; GENE SEQUENCE; GENETIC SCREENING; GERM CELL; GONAD; IN SITU HYBRIDIZATION; MALE; MOLECULAR CLONING; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; REPRODUCTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEX DIFFERENCE; SOMATIC CELL; SYNTENY; TILAPIA; AMINO ACID SEQUENCE; ANIMAL; GENETICS; HUMAN; METABOLISM; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

ANIMALIA; INVERTEBRATA; MAMMALIA; OREOCHROMIS NILOTICUS; TILAPIA; VERTEBRATA;

ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; FEMALE; GENE EXPRESSION; GONADS; HUMANS; IN SITU HYBRIDIZATION; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; SOXB2 TRANSCRIPTION FACTORS; TILAPIA;

EID: 78649934895     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-11-98     Document Type: Article

References (35)

1. Sinclair AH, Berta P, Palmer MS, Hawkins JR, Griffiths BL, Smith MJ, Foster JW, Frischauf AM, Lovell-Badge R, Goodfellow PN. A gene from the human sex determining region encodes a protein with homology to a conserved DNA-binding motif. Nature 1990, 364:240-244.
2. Gubbay J, Collignon J, Koopman P, Capel B, Economou A, Münsterberg A, Vivian N, Goodfellow P, Lovell-Badge R. A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes. Nature 1990, 346:245-250. 10.1038/346245a0, 2374589.
3. Koopman P, Gubbay J, Vivian N, Goodfellow P, Lovell-Badge R. Male development of chromosomally female mice transgenic for Sry. Nature 1991, 351:117-121. 10.1038/351117a0, 2030730.
4. Wilson MJ, Dearden PK. Evolution of the insect Sox genes. BMC Evol Biol 2008, 8:120. 10.1186/1471-2148-8-120, 2386450, 18439299.
5. Pevny LH, Lovell-Badge R. Sox genes find their feet. Curr Opin Genet Dev 1997, 7:338-344. 10.1016/S0959-437X(97)80147-5, 9229109.
6. Schepers GE, Teasdale RD, Koopman P. Twenty pairs of Sox: extent, homology, and nomenclature of the mouse and human Sox transcription factor gene families. Dev Cell 2002, 3:167-170. 10.1016/S1534-5807(02)00223-X, 12194848.
7. Lefebvre V, Dumitriu B, Penzo-Méndez A, Han Y, Pallavi B. Control of cell fate and differentiation by Sry-related highmobility-group box (Sox) transcription factors. Int J Biochem Cell Biol 2007, 39:2195-2214. 10.1016/j.biocel.2007.05.019, 2080623, 17625949.
8. Bowles J, Schepers G, Koopman P. Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators. Dev Biol 2000, 227:239-255. 10.1006/dbio.2000.9883, 11071752.
9. Hacker A, Capel B, Goodfellow P, Lovell-Badge R. Expression of Sry, the mouse sex determining gene. Development 1995, 121:1603-1614.
10. Collignon J, Sockanathan S, Hacker A, Cohen-Tannoudji M, Norris D, Rastan S, Stevanovic M, Goodfellow PN, Lovell-Badge R. A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2. Development 1996, 122:509-520.
11. Jay P, Goze C, Marsollier C, Taviaux S, Hardelin JP, Koopman P, Berta P. The human SOX11 gene: cloning, chromosomal assignment and tissue expression. Genomics 1995, 29:541-545. 10.1006/geno.1995.9970, 8666406.
12. Jay P, Sahly I, Goze C, Taviaux S, Poulat F, Couly G, Abitbol M, Berta P. SOX22 is a new member of the SOX gene family, mainly expressed in human nervous tissue. Hum Mol Genet 1997, 6:1069-1077. 10.1093/hmg/6.7.1069, 9215677.
13. Wright E, Hargrave MR, Christiansen J, Cooper L, Kun J, Evans T, Gangadharan U, Greenfield A, Koopman P. The Sry-related gene Sox9 is expressed during chondrogenesis in mouse embryos. Nat Genet 1995, 9:15-20. 10.1038/ng0195-15, 7704017.
14. Cohen-Barak O, Hagiwara N, Arlt MF, Horton JP, Brilliant MH. Cloning, characterization and chromosome mapping of the human SOX6 gene. Gene 2001, 265:157-164. 10.1016/S0378-1119(01)00346-8, 11255018.
15. Kanai Y, Kanai-Azuma M, Noce T, Saido TC, Hayashi Y, Yazaki K. Identification of two Sox17 messenger RNA isoforms, with and without the high mobility group box region, and their differential expression in mouse spermatogenesis. J Cell Biol 1996, 133:667-681. 10.1083/jcb.133.3.667, 2120827, 8636240.
16. Osaki E, Inazawa J, Copeland NG, Gilbert DJ, Jenkins NA, Ohsugi M, Tezuka T, Yoshida M, Semba K. Identification of a novel Sry-related gene and its germ cell-specific expression. Nucleic Acids Res 1999, 27:2503-2510. 10.1093/nar/27.12.2503, 148454, 10359848.
17. Stevanovic M, Lovell-Badge R, Collignon J, Goodfellow PN. SOX3 is an X-linked gene related to SRY. Hum Mol Genet 1993, 2:2013-2018. 10.1093/hmg/2.12.2013, 8111369.
18. Ballow D, Meistrich ML, Matzuk M, Rajkovic A. Sohlh1 is essential for spermatogonial differentiation. Dev Biol 2006, 294:161-167. 10.1016/j.ydbio.2006.02.027, 16564520.
19. Koopman P, Schepers G, Brenner S, Venkatesh B. Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes. Gene 2004, 17:177-186.
20. De Martino SP, Errington F, Ashworth A, Jowett T, Austin CA. Sox30: a novel zebrafish sox gene expressed in a restricted manner at the midbrain-hindbrain boundary during neurogenesis. Dev Genes Evol 1999, 209:357-362. 10.1007/s004270050264, 10370117.
21. Wang DS, Jiao B, Hu C, Huang X, Liu Z, Cheng CH. Discovery of a gonad-specific IGF subtype in teleost. Biochem Biophys Res Commun 2008, 367:336-341. 10.1016/j.bbrc.2007.12.136, 18166148.
22. Kobayashi T, Kajiura-Kobayashi H, Nagahama Y. Induction of XY sex reversal by estrogen involves altered gene expression in a teleost, tilapia. Cytogenet Genome Res 2003, 101:289-294. 10.1159/000074351, 14684997.
23. Zhang WL, Zhou LY, Senthilkumaran B, Sudhakumari CC, Kobayashi T, Nagahama Y, Wang DS. Molecular cloning of two isoforms of 11β-hydroxylase and their expressionsin the Nile tilapia, Oreochromis niloticus. Gen Comp Endocrinol 2010, 165:34-41. 10.1016/j.ygcen.2009.05.018, 19500584.
24. Zhou L, Wang D, Kobayashi T, Yano A, Paul-Prasanth B, Suzuki A, Sakai F, Nagahama Y. A novel type of P450c17, lacking the lyase activity is responsible for C21-steroid biosynthesis in the fish ovary and head kidney. Endocrinology 2007, 148:4282-4291. 10.1210/en.2007-0487, 17569754.
25. Jiao BW, Huang XG, Chan CB, Zhang L, Wang DS, Cheng CHK. The co-existence of two growth hormone receptors in teleost fish and their differential signal transduction, tissue distribution and hormonal regulation of expression in seabream. J Mol Endocrinol 2006, 36:23-40. 10.1677/jme.1.01945, 16461924.
26. Wang D, Kobayashi T, Zhou L, Nagahama Y. Molecular cloning and gene expression of Foxl2 in the Nile tilapia, Oreochromis niloticus. Biochem Biophys Res Commun 2004, 320:83-89. 10.1016/j.bbrc.2004.05.133, 15207705.
27. Phochanukul N, Russell S. No backbone but lots of Sox: Invertebrate Sox genes. Int J Biochem Cell Biol 2010, 42:453-464. 10.1016/j.biocel.2009.06.013, 19589395.
28. Nagai K. Molecular evolution of Sry and Sox gene. Gene 2001, 270:161-169. 10.1016/S0378-1119(01)00479-6, 11404013.
29. Hett AK, Ludwig A. SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio). Genome 2005, 48:181-186.
30. Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 2003, 302:2141-2144. 10.1126/science.1090100, 14684825.
31. Smith CW, Valcárcel J. Alternative pre-mRNA splicing: the logic of combinatorial control. Trends Biochem Sci 2000, 25:381-388. 10.1016/S0968-0004(00)01604-2, 10916158.
32. Takase M, Noguchi S, Nakamura M. Two Sox9 messenger RNA isoforms: isolation of cDNAs and their expression during gonadal development in the frog, Rana rugosa. FEBS Lett 2000, 466:249-254. 10.1016/S0014-5793(00)01078-4, 10682837.
33. Sakai N, Terami H, Suzuki S, Haga M, Nomoto K, Tsuchida N, Morohashi K, Saito N, Asada M, Hashimoto M, Harada D, Asahara H, Ishikawa T, Shimada F, Sakurada K. Identification of NR5A1 (SF-1/AD4BP) gene expression modulators by large-scale gain and loss of function studies. J Endocrinol 2008, 198:489-497. 10.1677/JOE-08-0027, 18579725.
34. Wang DS, Kobayashi T, Zhou LY, Paul-Prasanth B, Ijiri S, Sakai F, Okubo K, Morohashi K, Nagahama Y. Foxl2 up-regulates aromatase gene transcription in a female-specific manner by binding to the promoter as well as interacting with ad4 binding protein/steroidogenic factor 1. Molecular Endocrinology 2007, 21:712-725. 10.1210/me.2006-0248, 17192407.
35. Wang DS, Zhou LY, Kobayashi T, Matsuda M, Shibata Y, Sakai F, Nagahama Y. Dmrt1 repression of aromatase transcription, a possible mechanism favoring the male pathway in tilapia. Endocrinology 2010, 151:1331-1340. 10.1210/en.2009-0999, 20056824.