Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators

Developmental Biology

Volumn 227, Issue 2, 2000, Pages 239-255

  Bowles, Josephine ^a   Schepers, Goslik ^a   Koopman, Peter ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

HMG box; Nomenclature; Phylogeny; SOX; SRY related; Transcription factors

Indexed keywords

TRANSCRIPTION FACTOR;

DNA SEQUENCE; GENE DUPLICATION; GENE FUNCTION; GENE SEQUENCE; GENE STRUCTURE; GENETIC CONSERVATION; GENETIC ORGANIZATION; INTRON; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN STRUCTURE; REVIEW; SEQUENCE ANALYSIS; UNINDEXED SEQUENCE;

ANIMALIA; INVERTEBRATA; METAZOA; VERTEBRATA;

EID: 0034669139     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1006/dbio.2000.9883     Document Type: Review

References (91)

1. Evidence for a clade of nematodes, arthropods and other moulting animals
2. Zebrafish hox clusters and vertebrate genome evolution
3. SOX9 directly regulates the type-II collagen gene
4. Muscle differentiation is antagonized by SOX15, a new member of the SOX protein family
5. Sox9 is required for cartilage formation
6. Sry requires a CAG repeat domain for male sex determination in Mus musculus
7. A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2
8. The Sry-related HMG box-containing gene Sox6 is expressed in the adult testis and developing nervous system of the mouse
9. SoxNeuro, a new Drosophila Sox gene expressed in the developing central nervous system
10. Direct interaction of SRY-related protein SOX9 and steroidogenic factor 1 regulates transcription of the human anti-Mullerian hormone gene
11. A conserved family of genes related to the testis determining gene, SRY
12. Phosphorylation of an N-terminal motif enhances DNA-binding activity of the human SRY protein
13. Sry is a transcriptional activator
14. A non-sequential method for constructing trees and hierarchical classifications
15. Preservation of duplicate genes by complementary degenerative mutations
16. Evolution of sex determination and the Y chromosome: SRY-related sequences in marsupials
17. Campomelic dysplasia and autosomal sex reversal caused by mutations in an SRY-related gene
18. Distinct regulatory elements govern Fgf4 gene expression in the mouse blastocyst, myotomes, and developing limb
19. HMG domain proteins: Architectural elements in the assembly of nucleoprotein structures
20. A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes
21. COG-2, a sox domain protein necessary for establishing a functional vulval-uterine connection in Caenorhabditis elegans
22. The HMG box transcription factor gene Sox14 marks a novel subset of ventral interneurons and is regulated by sonic hedgehog
23. Expression of the Sox11 gene in mouse embryos suggests roles in neuronal maturation and epithelio-mesenchymal induction
24. The mouse Sox5 gene encodes a protein containing the leucine zipper and the Q box
25. Isolation and expression of a human SRY-related cDNA hSOX20
26. Gene duplications and the origins of vertebrate development
27. Trans-activation and DNA-binding properties of the transcription factor, Sox-18
28. Xsox17alpha and -beta mediate endoderm formation in Xenopus
29. Sox22 is a new member of the Sox gene family, mainly expressed in human nervous tissue
30. Relief of gene repression by Torso RTK signaling: Role of capicua in Drosophila terminal and dorsoventral patterning
31. Mechanism of regulatory target selection by the SOX high-mobility-group domain proteins as revealed by comparison of SOX1/2/3 and SOX9
32. Involvement of Sox1, 2 and 3 in the early and subsequent molecular events of lens induction
33. Identification of two Sox17 messenger RNA isoforms, with and without the high mobility group box region, and their differential expression in mouse spermatogenesis
34. Rainbow trout Sox24, a novel member of the Sox family, is a transcriptional regulator during oogenesis
35. Sex-determining region Y-related protein SOX13 is a diabetes autoantigen expressed in pancreatic islets
36. A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX-3 origin of the testis-determining gene SRY
37. Cloning and characterization of mouse mSox13 cDNA
38. Cloning and expression of Xenopus laevis xSOX12 cDNA
39. Male development of chromosomally female mice transgenic for Sry
40. Cooperative function of POU proteins and SOX proteins in glial cells
41. Ancestry and diversity of the HMG box superfamily
42. A new long form of Sox5 (L-Sox5), Sox6 and Sox9 are coexpressed in chondrogenesis and cooperatively activate the type II collagen gene
43. A Drosophila group E Sox gene is dynamically expressed in the embryonic alimentary canal
44. Functional and structural studies of wild type SOX9 and mutations causing campomelic dysplasia
45. SOX20, a new member of the SOX gene family, is located on chromosome 17p13
46. Length variation of CAG repeats in Sry across populations of Mus domesticus
47. Five different genes, Eif4a1, Cd68, Supl15h, Sox15 and Fxr2h, are clustered in a 40 kb region of mouse chromosome 11
48. SoxD: An essential mediator of induction of anterior neural tissues in Xenopus embryos
49. The Drosophila Sox gene, fish-hook, is required for postembryonic development
50. SOX9 binds DNA, activates transcription, and coexpresses with type II collagen during chondrogenesis in the mouse
51. Sox1 directly regulates the gamma-crystallin genes and is essential for lens development in mice
52. Identification of a novel Sry-related gene and its germ cell-specific expression
53. Evolution of the Sry genes
54. Modular exchange principles in proteins
55. Introns and exons
56. Protein zero gene expression is regulated by the glial transcription factor Sox10
57. Mutations in Sox18 underlie cardiovascular and hair follicle defects in ragged mice
58. SOX genes find their feet
59. A role for SOX1 in neural determination
60. The SOX8 gene is located within 700 kb of the tip of chromosome 16p and is deleted in a patient with ATR-16 syndrome
61. SOX10 mutations in patients with Waardenburg-Hirschsprung disease
62. The human testis determining factor SRY binds a nuclear factor containing PDZ protein interaction domains
63. The SOX10/Sox10 gene from human and mouse: Sequence, expression, and transactivation by the encoded HMG domain transcription factor
64. cSox21 exhibits a complex and dynamic pattern of transcription during embryonic development of the chicken central nervous system
65. Expression patterns of zebrafish sox11A, sox11B and sox21
66. The Sox-13 gene: Structure, promoter characterization, and chromosomal localization
67. High expression of the HMG box factor sox-13 in arterial walls during embryonic development
68. The Drosophila SOX-domain protein Dichaete is required for the development of the central nervous system midline
69. Cloning and characterization of the Sry-related transcription factor gene, Sox8
70. Defects in cardiac outflow tract formation and pro-B-lymphocyte expansion in mice lacking Sox-4
71. SOX9 enhances aggrecan gene expression via the promoter region containing a single HMG box sequence in a chondrogenic cell line, TC6
72. Diversification pattern of the HMG and SOX family members during evolution
73. Sox10 mutation disrupts neural crest development in Dom Hirschsprung mouse model
74. Isolation of a novel Sry-related gene that is expressed in high-metastatic K-1735 murine melanoma cells
75. Isolation and characterization of a mouse SRY-related cDNA, mSox7
76. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
77. Rapid evolution of the sex determining locus in old world and rats
78. Two distinct subgroups of Group B Sox genes for transcriptional activators and repressors: Their expression during embryonic organogenesis of the chicken
79. Sox 15, a novel member of the murine Sox family of HMG box transcription factors
80. Sox-4, an Sry-like HMG box protein, is a transcriptional activator in lymphocytes
81. Zygotic expression of the zebrafish Sox-19, an HMG box-containing gene, suggests an involvement in central nervous system development
82. The zebrafish Zf-Sox 19 protein - A novel member of the Sox family which reveals conserved motifs outside of the DNA-binding domain
83. Autosomal sex reversal and campomelic dysplasia are caused by mutations in and around the SRY-related gene SOX9
84. From head to toes: The multiple facets of Sox proteins
85. Rapid sequence evolution of the mammalian sex determining gene SRY
86. The Sry-related gene Sox-9 is expressed during chondrogenesis in mouse embryos
87. Seven new members of the Sox gene family expressed during mouse development
88. Cloning and characterization of SOX5, a new member of the human SOX gene family
89. cDNA cloning of a novel rainbow trout SRY-type HMG box protein, rtSox23 and its functional analysis
90. Developmental-specific activity of the FGF-4 enhancer requires the synergistic action of Sox2 and Oct-3