-
1
-
-
0030867481
-
Microbial Fe(III) reduction in subsurface environments
-
Lovley, D. R. (1997) Microbial Fe(III) reduction in subsurface environments. FEMS Microbiol. Rev., 20, 305-313.
-
(1997)
FEMS Microbiol. Rev.
, vol.20
, pp. 305-313
-
-
Lovley, D.R.1
-
2
-
-
7044222207
-
Dissimilatory Fe(III) and Mn(IV) reduction
-
Lovley, D. R., Holmes, D. E. and Nevin, K. P. (2004) Dissimilatory Fe(III) and Mn(IV) reduction. Adv. Microb. Physiol., 49, 219-286.
-
(2004)
Adv. Microb. Physiol.
, vol.49
, pp. 219-286
-
-
Lovley, D.R.1
Holmes, D.E.2
Nevin, K.P.3
-
3
-
-
10744231694
-
Stimulated in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer
-
Anderson, R. T., Vrionis, H. A., Ortiz-Bernad, I., Resch, C. T., Long, P. E., Dayvault, R., Marutzky, S., Metzler, D. R., Karp, K., Lowe, M. et al. (2003) Stimulated in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl. Environ. Microbiol., 69, 5884-5891.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5884-5891
-
-
Anderson, R.T.1
Vrionis, H.A.2
Ortiz-Bernad, I.3
Resch, C.T.4
Long, P.E.5
Dayvault, R.6
Marutzky, S.7
Metzler, D.R.8
Karp, K.9
Lowe, M.10
-
4
-
-
34848872870
-
Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer
-
Botton, S., van Harmelen, M., Braster, M., Parsons, J. R. and Roling, W. F. M. (2007) Dominance of Geobacteraceae in BTX-degrading enrichments from an iron-reducing aquifer. FEMS Microbiol. Ecol., 62, 118-130.
-
(2007)
FEMS Microbiol. Ecol.
, vol.62
, pp. 118-130
-
-
Botton, S.1
Van Harmelen, M.2
Braster, M.3
Parsons, J.R.4
Roling, W.F.M.5
-
5
-
-
36849085899
-
Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments
-
Holmes, D. E., O'Neil, R. A., Vrionis, H. A., N'Guessan, L. A., Ortiz-Bernad, I., Larrahondo, M. J., Adams, L. A., Ward, J. A., Nicoll, J. S., Nevin, K. P. et al. (2007) Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments. ISME J., 1, 663-677.
-
(2007)
ISME J.
, vol.1
, pp. 663-677
-
-
Holmes, D.E.1
O'Neil, R.A.2
Vrionis, H.A.3
N'Guessan, L.A.4
Ortiz-Bernad, I.5
Larrahondo, M.J.6
Adams, L.A.7
Ward, J.A.8
Nicoll, J.S.9
Nevin, K.P.10
-
6
-
-
2142763872
-
Cleaning up with genomics: Applying molecular biology to bioremediation
-
Lovley, D. R. (2003) Cleaning up with genomics: applying molecular biology to bioremediation. Nat. Rev. Microbiol., 1, 35-44.
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 35-44
-
-
Lovley, D.R.1
-
7
-
-
0024530378
-
Oxidation of aromatic contaminants coupled to microbial iron reduction
-
Lovley, D. R., Baedecker, M. J., Lonrgan, D. J., Cozzarelli, I. M., Phillips, E. J. P. and Siegel, D. I. (1989) Oxidation of aromatic contaminants coupled to microbial iron reduction. Nature, 339, 297-299.
-
(1989)
Nature
, vol.339
, pp. 297-299
-
-
Lovley, D.R.1
Baedecker, M.J.2
Lonrgan, D.J.3
Cozzarelli, I.M.4
Phillips, E.J.P.5
Siegel, D.I.6
-
8
-
-
0025920876
-
Microbial reduction of uranium
-
Lovley, D. R., Phillips, E. J., Gorby, Y. A. and Landa, E. R. (1991) Microbial reduction of uranium. Nature, 350, 413-416.
-
(1991)
Nature
, vol.350
, pp. 413-416
-
-
Lovley, D.R.1
Phillips, E.J.2
Gorby, Y.A.3
Landa, E.R.4
-
9
-
-
0032976385
-
Microbial communities associated with anaerobic benzene mineralization in a petroleum-contaminated aquifer
-
Rooney-Varga, J. N., Anderson, R. T., Fraga, J. L., Ringelberg, D. and Lovley, D. R. (1999) Microbial communities associated with anaerobic benzene mineralization in a petroleum-contaminated aquifer. Appl. Environ. Microbiol., 65, 3056-3063.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3056-3063
-
-
Rooney-Varga, J.N.1
Anderson, R.T.2
Fraga, J.L.3
Ringelberg, D.4
Lovley, D.R.5
-
10
-
-
0000371733
-
Ecology and biogeochemistry of in situ groundwater bioremediation
-
Anderson, R. T. and Lovley, D. R. (1997) Ecology and biogeochemistry of in situ groundwater bioremediation. Adv. Microbial. Ecol., 15, 289-350.
-
(1997)
Adv. Microbial. Ecol.
, vol.15
, pp. 289-350
-
-
Anderson, R.T.1
Lovley, D.R.2
-
11
-
-
67650590854
-
The genome sequence of Geobacter metallireducens: Features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens
-
Aklujkar, M., Krushkal, J., Dibartolo, G., Lapidus, A., Land, M. L. and Lovley, D. R. (2009) The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens. BMC Microbiol., 9, 109.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 109
-
-
Aklujkar, M.1
Krushkal, J.2
Dibartolo, G.3
Lapidus, A.4
Land, M.L.5
Lovley, D.R.6
-
12
-
-
0034353620
-
2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria. Geobacter and Magnetospirillum species
-
2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species. Environ. Microbiol., 2, 266-273.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 266-273
-
-
Bazylinski, D.A.1
Dean, A.J.2
Schuler, D.3
Phillips, E.J.4
Lovley, D.R.5
-
13
-
-
0035407383
-
Development of a genetic system for Geobacter sulfurreducens
-
Coppi, M. V., Leang, C., Sandler, S. J. and Lovley, D. R. (2001) Development of a genetic system for Geobacter sulfurreducens. Appl. Environ. Microbiol., 67, 3180-3187.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 3180-3187
-
-
Coppi, M.V.1
Leang, C.2
Sandler, S.J.3
Lovley, D.R.4
-
14
-
-
10444268971
-
In situ expression of nifD in Geobacteraceae in subsurface sediments
-
Holmes, D. E., Nevin, K. P. and Lovley, D. R. (2004) In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl. Environ. Microbiol., 70, 7251-7259.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 7251-7259
-
-
Holmes, D.E.1
Nevin, K.P.2
Lovley, D.R.3
-
15
-
-
17644418853
-
DNA Microarray Analysis of Nitrogen Fixation and Fe(III) Reduction in Geobacter sulfurreducens
-
Methe, B. A., Webster, K., Nevin, K. P., Butler, J. E. and Lovley, D. R. (2005) DNA Microarray Analysis of Nitrogen Fixation and Fe(III) Reduction in Geobacter sulfurreducens. Appl. Environ. Microbiol., 71, 2530-2538.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2530-2538
-
-
Methe, B.A.1
Webster, K.2
Nevin, K.P.3
Butler, J.E.4
Lovley, D.R.5
-
16
-
-
58549102477
-
Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments
-
Holmes, D. E., O'Neil, R. A., Chavan, M. A., N'Guessan, L. A., Vrionis, H. A., Perpetua, L. A., Larrahondo, M. J., Didonato, R., Liu, A. and Lovley, D. R. (2009) Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments. ISME J., 3, 216-230.
-
(2009)
ISME J.
, vol.3
, pp. 216-230
-
-
Holmes, D.E.1
O'Neil, R.A.2
Chavan, M.A.3
N'Guessan, L.A.4
Vrionis, H.A.5
Perpetua, L.A.6
Larrahondo, M.J.7
Didonato, R.8
Liu, A.9
Lovley, D.R.10
-
17
-
-
67449110763
-
Influence of heterogeneous ammonium availability on bacterial community structure
-
Mouser, P. J., N'Guessan, A. L., Elifantz, H., Holmes, D. E., Williams, K. H., Wilkins, M. J., Long, P. E. and Lovley, D. R. (2009) Influence of heterogeneous ammonium availability on bacterial community structure. Environ. Sci. Technol., 43, 4386-4392.
-
(2009)
Environ. Sci. Technol.
, vol.43
, pp. 4386-4392
-
-
Mouser, P.J.1
N'Guessan, A.L.2
Elifantz, H.3
Holmes, D.E.4
Williams, K.H.5
Wilkins, M.J.6
Long, P.E.7
Lovley, D.R.8
-
18
-
-
33744906766
-
Microbial fuel cells: Novel microbial physiologies and engineering approaches
-
Lovley, D. R. (2006) Microbial fuel cells: novel microbial physiologies and engineering approaches. Curr. Opin. Biotechnol., 17, 327-332.
-
(2006)
Curr. Opin. Biotechnol.
, vol.17
, pp. 327-332
-
-
Lovley, D.R.1
-
19
-
-
33745225414
-
Bug juice: Harvesting electricity with microorganisms
-
Lovley, D. R. (2006) Bug juice: harvesting electricity with microorganisms. Nat. Rev. Microbiol., 4, 497-508.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 497-508
-
-
Lovley, D.R.1
-
20
-
-
57049119571
-
The microbe electric: Conversion of organic matter to electricity
-
Lovley, D. R. (2008) The microbe electric: conversion of organic matter to electricity. Curr. Opin. Biotechnol., 19, 564-571.
-
(2008)
Curr. Opin. Biotechnol.
, vol.19
, pp. 564-571
-
-
Lovley, D.R.1
-
21
-
-
0037127004
-
Electrode-reducing microorganisms harvesting energy from marine sediments
-
Bond, D. R., Holmes, D. E., Tender, L. M. and Lovley, D. R. (2002) Electrode-reducing microorganisms harvesting energy from marine sediments. Science, 295, 483-485.
-
(2002)
Science
, vol.295
, pp. 483-485
-
-
Bond, D.R.1
Holmes, D.E.2
Tender, L.M.3
Lovley, D.R.4
-
22
-
-
2642518174
-
Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments
-
Holmes, D. E., Bond, D. R., O'Neil, R. A., Reimers, C. E., Tender, L. R. and Lovley, D. R. (2004) Microbial communities associated with electrodes harvesting electricity from a variety of aquatic sediments. Microb. Ecol., 48, 178-190.
-
(2004)
Microb. Ecol.
, vol.48
, pp. 178-190
-
-
Holmes, D.E.1
Bond, D.R.2
O'Neil, R.A.3
Reimers, C.E.4
Tender, L.R.5
Lovley, D.R.6
-
23
-
-
57149090915
-
Bacterial electrode reducing activities of Geobacter sulfurreducens compared to an enriched consortium in an air-cathode microbial fuel cell
-
Ishii, S., Watanabe, K., Yabuki, S., Logan, B. E. and Sekiguchi, Y. (2008) Bacterial electrode reducing activities of Geobacter sulfurreducens compared to an enriched consortium in an air-cathode microbial fuel cell. Appl. Environ. Microbiol., 74, 7345-7355.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 7345-7355
-
-
Ishii, S.1
Watanabe, K.2
Yabuki, S.3
Logan, B.E.4
Sekiguchi, Y.5
-
24
-
-
35648969193
-
Comparison of anode bacterial communities and performance in microbial fuel cells with different electron donors
-
Jung, S. and Regan, J. M. (2007) Comparison of anode bacterial communities and performance in microbial fuel cells with different electron donors. Appl. Microbiol. Biotechnol., 77, 393-402.
-
(2007)
Appl. Microbiol. Biotechnol.
, vol.77
, pp. 393-402
-
-
Jung, S.1
Regan, J.M.2
-
25
-
-
52949140887
-
Electricity production and microbial biofilm characterization in cellulose-fed microbial fuel cells
-
Ren, Z., Steinberg, L. M. and Regan, J. M. (2008) Electricity production and microbial biofilm characterization in cellulose-fed microbial fuel cells. Water Sci. Technol., 58, 617-622.
-
(2008)
Water Sci. Technol.
, vol.58
, pp. 617-622
-
-
Ren, Z.1
Steinberg, L.M.2
Regan, J.M.3
-
26
-
-
51649118803
-
Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells
-
Nevin, K. P., Richter, H., Covalla, S. F., Johnson, J. P., Woodard, T. L., Orloff, A. L., Jia, H., Zhang, M. and Lovley, D. R. (2008) Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells. Environ. Microbiol., 10, 2505-2514.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 2505-2514
-
-
Nevin, K.P.1
Richter, H.2
Covalla, S.F.3
Johnson, J.P.4
Woodard, T.L.5
Orloff, A.L.6
Jia, H.7
Zhang, M.8
Lovley, D.R.9
-
27
-
-
33751014053
-
Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells
-
Reguera, G., Nevin, K. P., Nicoll, J. S., Covalla, S. F., Woodard, T. L. and Lovley, D. R. (2006) Biofilm and nanowire production leads to increased current in Geobacter sulfurreducens fuel cells. Appl. Environ. Microbiol., 72, 7345-7348.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7345-7348
-
-
Reguera, G.1
Nevin, K.P.2
Nicoll, J.S.3
Covalla, S.F.4
Woodard, T.L.5
Lovley, D.R.6
-
28
-
-
4344704870
-
Genetic regulation of biological nitrogen fixation
-
Dixon, R. and Kahn, D. (2004) Genetic regulation of biological nitrogen fixation. Nat. Rev. Microbiol., 2, 621-631.
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 621-631
-
-
Dixon, R.1
Kahn, D.2
-
29
-
-
1642500165
-
The NifL-NifA System: A multidomain transcriptional regulatory complex that integrates environmental signals
-
Martinez-Argudo, I., Little, R., Shearer, N., Johnson, P. and Dixon, R. (2004) The NifL-NifA System: a multidomain transcriptional regulatory complex that integrates environmental signals. J. Bacteriol., 186, 601-610.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 601-610
-
-
Martinez-Argudo, I.1
Little, R.2
Shearer, N.3
Johnson, P.4
Dixon, R.5
-
30
-
-
34047258047
-
A second paradigm for gene activation in bacteria
-
Buck, M., Bose, D., Burrows, P., Cannon, W., Joly, N., Pape, T., Rappas, M., Schumacher, J., Wigneshweraraj, S. and Zhang, X. (2006) A second paradigm for gene activation in bacteria. Biochem. Soc. Trans., 34, 1067-1071.
-
(2006)
Biochem. Soc. Trans.
, vol.34
, pp. 1067-1071
-
-
Buck, M.1
Bose, D.2
Burrows, P.3
Cannon, W.4
Joly, N.5
Pape, T.6
Rappas, M.7
Schumacher, J.8
Wigneshweraraj, S.9
Zhang, X.10
-
31
-
-
33846895023
-
Bacterial enhancer-binding proteins: Unlocking sigma54-dependent gene transcription
-
Rappas, M., Bose, D. and Zhang, X. (2007) Bacterial enhancer-binding proteins: unlocking sigma54-dependent gene transcription. Curr. Opin. Struct. Biol., 17, 110-116.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 110-116
-
-
Rappas, M.1
Bose, D.2
Zhang, X.3
-
32
-
-
0037332383
-
54-dependent transcriptional activators
-
54-dependent transcriptional activators. J. Bacteriol., 185, 1757-1767.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1757-1767
-
-
Studholme, D.J.1
Dixon, R.2
-
33
-
-
0035066617
-
Transcriptional regulation at a distance in bacteria
-
Xu, H. and Hoover, T. R. (2001) Transcriptional regulation at a distance in bacteria. Curr. Opin. Microbiol., 4, 138-144.
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 138-144
-
-
Xu, H.1
Hoover, T.R.2
-
34
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
Anantharaman, V., Koonin, E. V. and Aravind, L. (2001) Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains. J. Mol. Biol., 307, 1271-1292.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
35
-
-
0030712081
-
The GAF domain: An evolutionary link between diverse phototransducing proteins
-
Aravind, L. and Ponting, C. P. (1997) The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem. Sci., 22, 458-459.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 458-459
-
-
Aravind, L.1
Ponting, C.P.2
-
37
-
-
0028050079
-
Geobacter sulfurreducens sp. Nov., a hydrogen-and acetate-oxidizing dissimilatory metal-reducing microorganism
-
Caccavo, F. Jr, Lonergan, D. J., Lovley, D. R., Davis, M., Stolz, J. F. and McInerney, M. J. (1994) Geobacter sulfurreducens sp. Nov., a hydrogen-and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl. Environ. Microbiol., 60, 3752-3759.
-
(1994)
Appl. Environ. Microbiol.
, vol.60
, pp. 3752-3759
-
-
Caccavo Jr., F.1
Lonergan, D.J.2
Lovley, D.R.3
Davis, M.4
Stolz, J.F.5
McInerney, M.J.6
-
38
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D. (1983) Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol., 166, 557-580.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
39
-
-
0003785155
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Miller, J. H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1972)
Experiments in Molecular Genetics
-
-
Miller, J.H.1
-
40
-
-
0037155137
-
Transcriptional activation of a heat-shock gene, lonD, of Myxococcus xanthus by a two-component histidine-aspartate phosphorelay system
-
Ueki, T. and Inouye, S. (2002) Transcriptional activation of a heat-shock gene, lonD, of Myxococcus xanthus by a two-component histidine-aspartate phosphorelay system. J. Biol. Chem., 277, 6170-6177.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 6170-6177
-
-
Ueki, T.1
Inouye, S.2
-
41
-
-
25444465658
-
Identification of a gene involved in polysaccharide export as a transcription target of FruA, an essential factor for Myxococcus xanthus development
-
Ueki, T. and Inouye, S. (2005) Identification of a gene involved in polysaccharide export as a transcription target of FruA, an essential factor for Myxococcus xanthus development. J. Biol. Chem., 280, 32279-32284.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 32279-32284
-
-
Ueki, T.1
Inouye, S.2
-
42
-
-
77950353132
-
Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species
-
Ueki, T. and Lovley, D. R. (2010) Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species. Nucleic Acids Res., 38, 810-821.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 810-821
-
-
Ueki, T.1
Lovley, D.R.2
-
43
-
-
0032581533
-
Construction of versatile high-level expression vectors for Bartonella henselae and the use of green fluorescent protein as a new expression marker
-
Dehio, M., Knorre, A., Lanz, C. and Dehio, C. (1998) Construction of versatile high-level expression vectors for Bartonella henselae and the use of green fluorescent protein as a new expression marker. Gene, 215, 223-229.
-
(1998)
Gene
, vol.215
, pp. 223-229
-
-
Dehio, M.1
Knorre, A.2
Lanz, C.3
Dehio, C.4
-
44
-
-
0028180278
-
PBBR1MCS: A broad-host-range cloning vector
-
Kovach, M. E., Phillips, R. W., Elzer, P. H., Roop, R. M. II. and Peterson, K. M. (1994) pBBR1MCS: a broad-host-range cloning vector. BioTechniques, 16, 800-802.
-
(1994)
BioTechniques
, vol.16
, pp. 800-802
-
-
Kovach, M.E.1
Phillips, R.W.2
Elzer, P.H.3
Roop, R.M.I.I.4
Peterson, K.M.5
-
45
-
-
0033570908
-
Compilation and analysis of sigma(54)-dependent promoter sequences
-
Barrios, H., Valderrama, B. and Morett, E. (1999) Compilation and analysis of sigma(54)-dependent promoter sequences. Nucleic Acids Res., 27, 4305-4313.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
47
-
-
68849107920
-
Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens
-
Leang, C., Krushkal, J., Ueki, T., Puljic, M., Sun, J., Juarez, K., Nunez, C., Reguera, G., DiDonato, R., Postier, B. et al. (2009) Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens. BMC Genomics, 10, 331.
-
(2009)
BMC Genomics
, vol.10
, pp. 331
-
-
Leang, C.1
Krushkal, J.2
Ueki, T.3
Puljic, M.4
Sun, J.5
Juarez, K.6
Nunez, C.7
Reguera, G.8
Didonato, R.9
Postier, B.10
-
49
-
-
26444481955
-
Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: A system-level analysis
-
Skerker, J. M., Prasol, M. S., Perchuk, B. S., Biondi, E. G. and Laub, M. T. (2005) Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: a system-level analysis. PLoS Biol., 3, e334.
-
(2005)
PLoS Biol.
, vol.3
-
-
Skerker, J.M.1
Prasol, M.S.2
Perchuk, B.S.3
Biondi, E.G.4
Laub, M.T.5
-
50
-
-
44649153450
-
Rewiring the specificity of two-component signal transduction systems
-
Skerker, J. M., Perchuk, B. S., Siryaporn, A., Lubin, E. A., Ashenberg, O., Goulian, M. and Laub, M. T. (2008) Rewiring the specificity of two-component signal transduction systems. Cell, 133, 1043-1054.
-
(2008)
Cell
, vol.133
, pp. 1043-1054
-
-
Skerker, J.M.1
Perchuk, B.S.2
Siryaporn, A.3
Lubin, E.A.4
Ashenberg, O.5
Goulian, M.6
Laub, M.T.7
-
51
-
-
0029862989
-
Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria
-
Lonergan, D. J., Jenter, H. L., Coates, J. D., Phillips, E. J. P., Schmidt, T. M. and Lovley, D. R. (1996) Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria. J. Bacteriol., 178, 2402-2408.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 2402-2408
-
-
Lonergan, D.J.1
Jenter, H.L.2
Coates, J.D.3
Phillips, E.J.P.4
Schmidt, T.M.5
Lovley, D.R.6
-
53
-
-
0036160325
-
ANTAR: An RNA-binding domain in transcription antitermination regulatory proteins
-
Shu, C. J. and Zhulin, I. B. (2002) ANTAR: an RNA-binding domain in transcription antitermination regulatory proteins. Trends Biochem. Sci., 27, 3-5.
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 3-5
-
-
Shu, C.J.1
Zhulin, I.B.2
-
54
-
-
0019877865
-
Rho-independent termination: Dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro
-
Farnham, P. J. and Platt, T. (1981) Rho-independent termination: dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro. Nucleic Acids Res., 9, 563-577.
-
(1981)
Nucleic Acids Res.
, vol.9
, pp. 563-577
-
-
Farnham, P.J.1
Platt, T.2
-
55
-
-
2942706117
-
A DNA element recognized by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea
-
Studholme, D. J. and Pau, R. N. (2003) A DNA element recognized by the molybdenum-responsive transcription factor ModE is conserved in Proteobacteria, green sulphur bacteria and Archaea. BMC Microbiol., 3, 24.
-
(2003)
BMC Microbiol.
, vol.3
, pp. 24
-
-
Studholme, D.J.1
Pau, R.N.2
-
56
-
-
22544432327
-
Reconstruction of regulatory and metabolic pathways in metal-reducing d-proteobacteria
-
Rodionov, D. A., Dubchak, I., Arkin, A., Alm, E. and Gelfand, M. S. (2004) Reconstruction of regulatory and metabolic pathways in metal-reducing d-proteobacteria. Genome Biol., 5, R90.
-
(2004)
Genome Biol.
, vol.5
-
-
Rodionov, D.A.1
Dubchak, I.2
Arkin, A.3
Alm, E.4
Gelfand, M.S.5
-
57
-
-
0028865193
-
Nitrogen control in bacteria
-
Merrick, M. J. and Edwards, R. A. (1995) Nitrogen control in bacteria. Microbiol. Rev., 59, 604-622.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 604-622
-
-
Merrick, M.J.1
Edwards, R.A.2
-
58
-
-
0242276682
-
Nitrogen assimilation and global regulation in Escherichia coli
-
Reittzer, L. (2003) Nitrogen assimilation and global regulation in Escherichia coli. Annu. Rev. Microbiol., 57, 155-176.
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 155-176
-
-
Reittzer, L.1
-
59
-
-
0026088264
-
The role of the NAC protein in the nitrogen regulation of Klebsiella aerogenes
-
Bender, R. A. (1991) The role of the NAC protein in the nitrogen regulation of Klebsiella aerogenes. Mol. Microbiol., 5, 2575-2580.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 2575-2580
-
-
Bender, R.A.1
-
60
-
-
0021864787
-
Expression of glnA in Escherichia coli is regulated at tandem promoters
-
Reitzer, L. J. and Magasanik, B. (1985) Expression of glnA in Escherichia coli is regulated at tandem promoters. Proc. Natl Acad. Sci. USA, 82, 1979-1983.
-
(1985)
Proc. Natl Acad. Sci. USA
, vol.82
, pp. 1979-1983
-
-
Reitzer, L.J.1
Magasanik, B.2
-
61
-
-
0025012093
-
The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons
-
Hoover, T. R., Santero, E., Porter, S. and Kustu, S. (1990) The integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons. Cell, 5, 11-22.
-
(1990)
Cell
, vol.5
, pp. 11-22
-
-
Hoover, T.R.1
Santero, E.2
Porter, S.3
Kustu, S.4
-
62
-
-
0029002441
-
Active contribution of two domains to cooperative DNA binding of the enhancer-binding protein nitrogen regulator i (NtrC) of Escherichia coli: Stimulation by phosphorylation and the binding of ATP
-
Chen, P. and Reitzer, L. J. (1995) Active contribution of two domains to cooperative DNA binding of the enhancer-binding protein nitrogen regulator I (NtrC) of Escherichia coli: stimulation by phosphorylation and the binding of ATP. J. Bacteriol., 177, 2490-2496.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 2490-2496
-
-
Chen, P.1
Reitzer, L.J.2
-
63
-
-
0024041310
-
The role of activator binding sites in transcriptional control of the divergently transcribed nifF and nifLA promoters from Klebsiella pneumoniae
-
Minchin, S. D., Austin, S. and Dixon, R. A. (1988) The role of activator binding sites in transcriptional control of the divergently transcribed nifF and nifLA promoters from Klebsiella pneumoniae. Mol. Microbiol., 2, 433-442.
-
(1988)
Mol. Microbiol.
, vol.2
, pp. 433-442
-
-
Minchin, S.D.1
Austin, S.2
Dixon, R.A.3
-
64
-
-
0031089715
-
Signal transduction via the histidyl-aspartyl phosphorelay
-
Egger, L. A., Park, H. and Inouye, M. (1997) Signal transduction via the histidyl-aspartyl phosphorelay. Genes Cells, 2, 167-184.
-
(1997)
Genes Cells
, vol.2
, pp. 167-184
-
-
Egger, L.A.1
Park, H.2
Inouye, M.3
-
65
-
-
0035984639
-
Regulation by transcription attenuation in bacteria: How RNA provides instructions for transcription termination/antitermination decisions
-
Henkin, T. M. and Yanofsky, C. (2002) Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions. Bioessays, 24, 700-707.
-
(2002)
Bioessays
, vol.24
, pp. 700-707
-
-
Henkin, T.M.1
Yanofsky, C.2
-
66
-
-
0024507985
-
Positive control of Pseudomonas aeruginosa amidase synthesis is mediated by a transcription anti-termination mechanism
-
Drew, R. and Lowe, N. (1989) Positive control of Pseudomonas aeruginosa amidase synthesis is mediated by a transcription anti-termination mechanism. J. Gen. Microbiol., 135, 817-823.
-
(1989)
J. Gen. Microbiol.
, vol.135
, pp. 817-823
-
-
Drew, R.1
Lowe, N.2
-
67
-
-
0027168828
-
Antitermination of amidase expression in Pseudomonas aeruginosa is controlled by a novel cytoplasmic amide-binding protein
-
Wilson, S. A., Wachira, S. J., Drew, R. E., Jones, D. and Pearl, L. H. (1993) Antitermination of amidase expression in Pseudomonas aeruginosa is controlled by a novel cytoplasmic amide-binding protein. EMBO J., 12, 3637-3642.
-
(1993)
EMBO J.
, vol.12
, pp. 3637-3642
-
-
Wilson, S.A.1
Wachira, S.J.2
Drew, R.E.3
Jones, D.4
Pearl, L.H.5
-
68
-
-
0033214785
-
Crystal structure and induction mechanism of AmiC-AmiR: A ligand-regulated transcription antitermination complex
-
O'Hara, B. P., Norman, R. A., Wan, P. T. C., Roe, S. M., Barrett, T. E., Drew, R. E. and Pearl, L. H. (1999) Crystal structure and induction mechanism of AmiC-AmiR: a ligand-regulated transcription antitermination complex. EMBO J., 18, 5175-5186.
-
(1999)
EMBO J.
, vol.18
, pp. 5175-5186
-
-
O'Hara, B.P.1
Norman, R.A.2
Wan, P.T.C.3
Roe, S.M.4
Barrett, T.E.5
Drew, R.E.6
Pearl, L.H.7
-
69
-
-
0032561133
-
NasR, a novel RNA-binding protein, mediates nitrateresponsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader in vitro
-
Chai, W. and Stewart, V. (1998) NasR, a novel RNA-binding protein, mediates nitrateresponsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader in vitro. J. Mol. Biol., 283, 339-351.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 339-351
-
-
Chai, W.1
Stewart, V.2
-
70
-
-
0033578787
-
RNA Sequence Requirements for NasR-mediated, nitrate-responsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader
-
Chai, W. and Stewart, V. (1999) RNA Sequence Requirements for NasR-mediated, nitrate-responsive transcription antitermination of the Klebsiella oxytoca M5al nasF operon leader. J. Mol. Biol., 292, 203-216.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 203-216
-
-
Chai, W.1
Stewart, V.2
-
71
-
-
0037333759
-
The NIT domain: A predicted nitrate-responsive module in bacterial sensory receptors
-
Shu, C. J., Ulrich, L. E. and Zhulin, I. B. (2003) The NIT domain: a predicted nitrate-responsive module in bacterial sensory receptors. Trends Biochem. Sci., 28, 121-124.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 121-124
-
-
Shu, C.J.1
Ulrich, L.E.2
Zhulin, I.B.3
-
72
-
-
0026512864
-
Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors
-
Lukat, G. S., McCleary, W. R., Stock, A. M. and Stock, J. B. (1992) Phosphorylation of bacterial response regulator proteins by low molecular weight phospho-donors. Proc. Natl Acad. Sci. USA, 89, 718-722.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 718-722
-
-
Lukat, G.S.1
McCleary, W.R.2
Stock, A.M.3
Stock, J.B.4
-
73
-
-
0027207516
-
Is acetyl phosphate a global signal in Escherichia coli?
-
McCleary, W. R., Stock, J. B. and Ninfa, A. J. (1993) Is acetyl phosphate a global signal in Escherichia coli? J. Bacteriol., 175, 2793-2798.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 2793-2798
-
-
McCleary, W.R.1
Stock, J.B.2
Ninfa, A.J.3
-
74
-
-
2942558361
-
RegB/ RegA, a highly conserved redox-responding global two-component regulatory system
-
Elsen, S., Swem, L. R., Swem, D. L. and Bauer, C. E. (2004) RegB/ RegA, a highly conserved redox-responding global two-component regulatory system. Microbiol. Mol. Biol. Rev., 68, 263-279.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 263-279
-
-
Elsen, S.1
Swem, L.R.2
Swem, D.L.3
Bauer, C.E.4
-
75
-
-
34548356914
-
Aer on the inside looking out: Paradigm for a PAS-HAMP role in sensing oxygen, redox and energy
-
Taylor, B. L. (2007) Aer on the inside looking out: paradigm for a PAS-HAMP role in sensing oxygen, redox and energy. Mol. Microbiol., 65, 1415-1424.
-
(2007)
Mol. Microbiol.
, vol.65
, pp. 1415-1424
-
-
Taylor, B.L.1
-
76
-
-
0032990441
-
PAS domains: Internal sensors of oxygen, redox potential, and light
-
Taylor, B. L. and Zhulin, I. B. (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev., 63, 479-506.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
77
-
-
63349088137
-
Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation
-
Mouser, P. J., Holmes, D. E., Perpetua, L. A., Didonato, R., Postier, B., Liu, A. and Lovley, D. R. (2009) Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation. ISME J., 3, 454-465.
-
(2009)
ISME J.
, vol.3
, pp. 454-465
-
-
Mouser, P.J.1
Holmes, D.E.2
Perpetua, L.A.3
Didonato, R.4
Postier, B.5
Liu, A.6
Lovley, D.R.7
|