메뉴 건너뛰기




Volumn 43, Issue 12, 2009, Pages 4386-4392

Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA SEQUENCES; AMMONIUM CONCENTRATIONS; AMMONIUM TRANSPORTER GENES; BACTERIAL COMMUNITY STRUCTURE; COMMUNITY COMPOSITION; CONTAMINATED GROUNDWATER; FIELD SCALE; GEOBACTER; IN-SITU; IN-SITU BIOREMEDIATION; METAL REDUCTION; MICROBIAL PROCESS; NITROGEN FIXATION GENES; ONE-FACTOR; ORDERS OF MAGNITUDE; PHYSIOLOGICAL INTERACTIONS; PHYSIOLOGICAL STATUS; PRIMARY SOURCES; STUDY SITES; TRANSCRIPT LEVEL; URANIUM REDUCTION;

EID: 67449110763     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es8031055     Document Type: Article
Times cited : (78)

References (39)
  • 1
    • 2142763872 scopus 로고    scopus 로고
    • Cleaning up with genomics: Applying molecular biology to bioremediation
    • Lovley, D. R. Cleaning up with genomics: Applying molecular biology to bioremediation. Nature Rev. Microbiol. 2003, 1 (1), 35-44.
    • (2003) Nature Rev. Microbiol. , vol.1 , Issue.1 , pp. 35-44
    • Lovley, D.R.1
  • 2
    • 0034755483 scopus 로고    scopus 로고
    • Nutrient enhanced biodegradation of crude oil in tropical salt marshes
    • DOI 10.1023/A:1011955316662
    • Shin, W. S.; Pardue, J. H.; Jackson, W. A.; Choi, S. J. Nutrient enhanced biodegradation of crude oil in tropical salt marshes. Water, Air, Soil Pollut. 2001, 131 (1-4), 135-152. (Pubitemid 32982377)
    • (2001) Water, Air, and Soil Pollution , vol.131 , Issue.1-4 , pp. 135-152
    • Shin, W.S.1    Pardue, J.H.2    Jackson, W.A.3    Choi, S.J.4
  • 6
    • 4143121402 scopus 로고    scopus 로고
    • Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate
    • DOI 10.1128/AEM.70.8.4911-4920.2004
    • North, N. N.; Dollhopf, S. L.; Petrie, L.; Istok, J. D.; Balkwill, D. L.; Kostka, J. E. Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate. Appl. Environ. Microbiol. 2004, 70 (8), 4911-4920. (Pubitemid 39095521)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.8 , pp. 4911-4920
    • North, N.N.1    Dollhopf, S.L.2    Petrie, L.3    Istok, J.D.4    Balkwill, D.L.5    Kostka, J.E.6
  • 7
    • 0036742036 scopus 로고    scopus 로고
    • Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments
    • Finneran, K. T.; Housewright, M. E.; Lovley, D. R. Multiple influences of nitrate on uranium solubility during bioremediation of uranium-contaminated subsurface sediments. Environ. Microbiol. 2002, 4 (9), 510-516.
    • (2002) Environ. Microbiol. , vol.4 , Issue.9 , pp. 510-516
    • Finneran, K.T.1    Housewright, M.E.2    Lovley, D.R.3
  • 9
    • 0033673830 scopus 로고    scopus 로고
    • A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the β-subdivision of the class proteobacteria in contaminated groundwater
    • Ivanova, I. A.; Stephen, J. R.; Chang, Y. J.; Brüggemann, J.; Long, P. E.; McKinley, J. G.; Kowalchuk, G. A.; White, D. C.; Macnaughton, S. J. A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the β-subdivision of the class proteobacteria in contaminated groundwater. Can. J. Microbiol. 2000, 46 (11), 1012-1020.
    • (2000) Can. J. Microbiol. , vol.46 , Issue.11 , pp. 1012-1020
    • Ivanova, I.A.1    Stephen, J.R.2    Chang, Y.J.3    Brüggemann, J.4    Long, P.E.5    McKinley, J.G.6    Kowalchuk, G.A.7    White, D.C.8    Macnaughton, S.J.9
  • 10
    • 4644257150 scopus 로고    scopus 로고
    • Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens
    • DOI 10.1128/AEM.70.9.5183-5189.2004
    • Chin, K. J.; Esteve-Nunez, A.; Leang, C.; Lovley, D. R. Direct correlation between rates of anaerobic respiration and levels of mRNA for key respiratory genes in Geobacter sulfurreducens. Appl. Environ. Microbiol. 2004, 70 (9), 5183-5189. (Pubitemid 39279588)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.9 , pp. 5183-5189
    • Chin, K.-J.1    Esteve-Nunez, A.2    Leang, C.3    Lovley, D.R.4
  • 11
    • 40949129223 scopus 로고    scopus 로고
    • Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenes
    • Rahm, B. G.; Richardson, R. E. Correlation of respiratory gene expression levels and pseudo-steady-state PCE respiration rates in Dehalococcoides ethenogenes. Environ. Sci. Technol. 2008, 42 (2), 416-421.
    • (2008) Environ. Sci. Technol. , vol.42 , Issue.2 , pp. 416-421
    • Rahm, B.G.1    Richardson, R.E.2
  • 12
    • 0027231336 scopus 로고
    • Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites
    • Fleming, J. T.; Sanseverino, J.; Sayler, G. S. Quantitative relationship between naphthalene catabolic gene frequency and expression in predicting PAH degradation in soils at town gas manufacturing sites. Environ. Sci. Technol. 1993, 27 (6), 1068-1074. (Pubitemid 23178626)
    • (1993) Environmental Science and Technology , vol.27 , Issue.6 , pp. 1068-1074
    • Fleming, J.T.1    Sanseverino, J.2    Sayler, G.S.3
  • 14
    • 44849121863 scopus 로고    scopus 로고
    • Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
    • DOI 10.1038/ismej.2008.21, PII ISMEJ200821
    • Baelum, J.; Nicolaisen, M. H.; Holben, W. E.; Strobel, B. W.; Sorensen, J.; Jacobsen, C. S. Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil. ISME J. 2008, 2 (6), 677-687. (Pubitemid 351793253)
    • (2008) ISME Journal , vol.2 , Issue.6 , pp. 677-687
    • Baelum, J.1    Nicolaisen, M.H.2    Holben, W.E.3    Strobel, B.W.4    Sorensen, J.5    Jacobsen, C.S.6
  • 16
    • 63349088137 scopus 로고    scopus 로고
    • Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation
    • Mouser, P. J.; Holmes, D. E.; Purpetua, L. A.; DiDonato, R. J.; Postier, B.; Liu, A.; Lovley, D. R. Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation. ISME J. 2009, 3 (4), 454-465.
    • (2009) ISME J. , vol.3 , Issue.4 , pp. 454-465
    • Mouser, P.J.1    Holmes, D.E.2    Purpetua, L.A.3    DiDonato, R.J.4    Postier, B.5    Liu, A.6    Lovley, D.R.7
  • 17
    • 0034353620 scopus 로고    scopus 로고
    • 2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter and Magnetospirillum species
    • DOI 10.1046/j.1462-2920.2000.00096.x
    • Bazylinski, D. A.; Dean, A. J.; Schuler, D.; Phillips, E. J. P.; Lovley, D. R.N2-dependent growth and nitrogenase activity in the metalmetabolizing bacteria Geobacter and Magnetospirillum species. Environ. Microbiol. 2000, 2 (3), 266-273. (Pubitemid 33127596)
    • (2000) Environmental Microbiology , vol.2 , Issue.3 , pp. 266-273
    • Bazylinski, D.A.1    Dean, A.J.2    Schuler, D.3    Phillips, E.J.P.4    Lovley, D.R.5
  • 18
    • 10444268971 scopus 로고    scopus 로고
    • In situ expression of nifD in Geobacteraceae in subsurface sediments
    • DOI 10.1128/AEM.70.12.7251-7259.2004
    • Holmes, D. E.; Nevin, K. P.; Lovley, D. R. In situ expression of nifD in Geobacteraceae in subsurface sediments. Appl. Environ. Microbiol. 2004, 70 (12), 7251-7259. (Pubitemid 39643790)
    • (2004) Applied and Environmental Microbiology , vol.70 , Issue.12 , pp. 7251-7259
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 19
    • 17644418853 scopus 로고    scopus 로고
    • DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
    • DOI 10.1128/AEM.71.5.2530-2538.2005
    • Methe, B. A.; Webster, J.; Nevin, K.; Butler, J.; Lovley, D. R. DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens. Appl. Environ. Microbiol. 2005, 71 (5), 2530-2538. (Pubitemid 40646998)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.5 , pp. 2530-2538
    • Methe, B.A.1    Webster, J.2    Nevin, K.3    Butler, J.4    Lovley, D.R.5
  • 20
    • 0006472201 scopus 로고
    • Sequence of the nifD gene coding for the α-subunit of dinitrogenase from the Cyanobacterium Anabaena
    • Lammers, P. J.; Haselkorn, R. Sequence of the nifD gene coding for the α-subunit of dinitrogenase from the Cyanobacterium Anabaena. Proc. Natl. Acad. Sci. U.S.A. 1983, 80 (15), 4723-4727.
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , Issue.15 , pp. 4723-4727
    • Lammers, P.J.1    Haselkorn, R.2
  • 22
    • 5444244948 scopus 로고    scopus 로고
    • Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov
    • DOI 10.1099/ijs.0.02958-0
    • Holmes, D. E.; Nevin, K. P.; Lovley, D. R. Comparison of 16S rRNA, nifD, recA, gyrB, rpoB, and fusA genes within the family Geobacteraceae fam. nov. Int. J. Syst. Evol. Microbiol. 2004, 54, 1591-1599. (Pubitemid 39359973)
    • (2004) International Journal of Systematic and Evolutionary Microbiology , vol.54 , Issue.5 , pp. 1591-1599
    • Holmes, D.E.1    Nevin, K.P.2    Lovley, D.R.3
  • 23
    • 34548102139 scopus 로고    scopus 로고
    • The Amt/Mep/Rh family of ammonium transport proteins (Review)
    • DOI 10.1080/09687680701388423, PII 780514533
    • Andrade, S. L. A.; Einsle, O. The Amt/Mep/Rh family of ammonium transport proteins. Mol. Membr. Biol. 2007, 24 (5-6), 357-365. (Pubitemid 47290680)
    • (2007) Molecular Membrane Biology , vol.24 , Issue.5-6 , pp. 357-365
    • Andrade, S.L.A.1    Einsle, O.2
  • 24
    • 0027061480 scopus 로고
    • Isotope fractionation associated with ammonium uptake by a marine bacterium
    • Hoch, M. P.; Fogel, M. L.; Kirchman, D. L. Isotope fractionation associated with ammonium uptake by a marine bacterium. Limnol. Oceanogr. 1992, 37 (7), 1447-1459. (Pubitemid 23408784)
    • (1992) Limnology & Oceanography , vol.37 , Issue.7 , pp. 1447-1459
    • Hoch, M.P.1    Fogel, M.L.2    Kirchman, D.L.3
  • 25
    • 4644220261 scopus 로고    scopus 로고
    • Mechanism of ammonia transport by Amt/MEP/Rh: Structure of AmtB at 135 Å
    • DOI 10.1126/science.1101952
    • Khademi, S.; O'Connell, J.; Remis, J.; Robles-Colmenares, Y.; Miericke, L. J. W.; Stroud, R. M. Mechanism of ammonia transport by Amt/MEP/Rh: Structure of AmtBat 1.3.5 angstrom. Science 2004, 305 (5690), 1587-1594. (Pubitemid 39296348)
    • (2004) Science , vol.305 , Issue.5690 , pp. 1587-1594
    • Khademi, S.1    O'Connell III, J.2    Remis, J.3    Robles-Colmenares, Y.4    Miercke, L.J.W.5    Stroud, R.M.6
  • 26
    • 0021796811 scopus 로고
    • Bacterial ammonium transport
    • Kleiner, D. Bacterial ammonium transport. FEMS Microbio. Rev. 1985, 32 (2), 87-100. (Pubitemid 15020660)
    • (1985) FEMS Microbiology Reviews , vol.32 , Issue.2 , pp. 87-100
    • Kleiner, D.1
  • 27
    • 3543104864 scopus 로고    scopus 로고
    • Uranium mill tailings: Nuclear waste and natural laboratory for geochemical and radioecological investigations
    • DOI 10.1016/j.jenvrad.2004.01.030, PII S0265931X04000633
    • Landa, E. R. Uranium mill tailings: Nuclear waste and natural laboratory for geochemical and radioecological investigations. J. Environ. Radioact. 2004, 77, 1-27. (Pubitemid 39024581)
    • (2004) Journal of Environmental Radioactivity , vol.77 , Issue.1 , pp. 1-27
    • Landa, E.R.1
  • 28
    • 84944813042 scopus 로고
    • Determination of ammonia in natural waters by the phenolhypochlorite method
    • Solorzano, L. Determination of ammonia in natural waters by the phenolhypochlorite method. Limnol. Oceanogr. 1969, 14, 799.
    • (1969) Limnol. Oceanogr. , vol.14 , pp. 799
    • Solorzano, L.1
  • 29
    • 0036276689 scopus 로고    scopus 로고
    • Potential for bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction
    • Finneran, K. T.; Anderson, R. T.; Nevin, K. P.; Lovley, D. R. Potential for bioremediation of uranium-contaminated aquifers with microbial U(VI) reduction. Soil Sediment Contam. 2002, 11 (3), 339-357. (Pubitemid 34617010)
    • (2002) Soil and Sediment Contamination , vol.11 , Issue.3 , pp. 339-357
    • Finneran, K.T.1    Anderson, R.T.2    Nevin, K.P.3    Lovley, D.R.4
  • 30
    • 0000209741 scopus 로고
    • Organic matter mineralization with reduction of ferric iron in anaerobic sediments
    • Lovley, D. R.; Phillips, E. J. P. Organic matter mineralization with reduction of ferric iron in anaerobic sediments. Appl. Environ. Microbiol. 1986, 51 (4), 683-689.
    • (1986) Appl. Environ. Microbiol. , vol.51 , Issue.4 , pp. 683-689
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 31
    • 0025869974 scopus 로고
    • Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA
    • Eden, P. E.; Schmidt, T. M.; Blakemore, R. P.; Pace, N. R. Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA. Int. J. Syst. Bacteriol. 1991, 41, 324-325.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 324-325
    • Eden, P.E.1    Schmidt, T.M.2    Blakemore, R.P.3    Pace, N.R.4
  • 35
    • 33845683068 scopus 로고    scopus 로고
    • Metabolically active microbial communities in uranium-contaminated subsurface sediments
    • DOI 10.1111/j.1574-6941.2006.00203.x
    • Akob, D. M.; Mills, H. J.; Kostka, J. E. Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiol. Ecol. 2007, 59 (1), 95-107. (Pubitemid 44952412)
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.1 , pp. 95-107
    • Akob, D.M.1    Mills, H.J.2    Kostka, J.E.3
  • 39
    • 7044222207 scopus 로고    scopus 로고
    • Dissimilatory Fe(III) and Mn(IV) reduction
    • Poole, R. K., Ed., Elsevier, Ltd: London
    • Lovley, D. R.; Holmes, D. E.; Nevin, K. P. Dissimilatory Fe(III) and Mn(IV) reduction. In Advances in Microbial Physiology; Poole, R. K., Ed., Elsevier, Ltd: London, 2004; Vol.49, pp 219-286.
    • (2004) Advances in Microbial Physiology , vol.49 , pp. 219-286
    • Lovley, D.R.1    Holmes, D.E.2    Nevin, K.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.