-
1
-
-
0026320866
-
The energy landscapes and motions of proteins
-
H. Frauenfelder S. G. Sligar P. G. Wolynes The energy landscapes and motions of proteins Science 1991 254 1598 1603
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Sligar, S.G.2
Wolynes, P.G.3
-
3
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
F. Chiti C. M. Dobson Protein misfolding, functional amyloid, and human disease Annu. Rev. Biochem. 2006 75 333 366
-
(2006)
Annu. Rev. Biochem.
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
4
-
-
0016610491
-
Computer simulation of protein folding
-
M. Levitt A. Warshel Computer Simulation of Protein Folding Nature 1975 253 694 698
-
(1975)
Nature
, vol.253
, pp. 694-698
-
-
Levitt, M.1
Warshel, A.2
-
6
-
-
39149104002
-
Combining experiment and simulation in protein folding: Closing the gap for small model systems
-
R. D. Schaeffer A. Fersht V. Daggett Combining experiment and simulation in protein folding: closing the gap for small model systems Curr. Opin. Struct. Biol. 2008 18 1 4 9
-
(2008)
Curr. Opin. Struct. Biol.
, vol.18
, Issue.1
, pp. 4-9
-
-
Schaeffer, R.D.1
Fersht, A.2
Daggett, V.3
-
7
-
-
0032561237
-
Pathways to a Protein Folding Intermediate Observed in a 1-microsecond Simulation in Aqueous Solution
-
Y. Duan P. A. Kollman Pathways to a Protein Folding Intermediate Observed in a 1-microsecond Simulation in Aqueous Solution Science 1998 282 740 744
-
(1998)
Science
, vol.282
, pp. 740-744
-
-
Duan, Y.1
Kollman, P.A.2
-
9
-
-
33646943202
-
Molecular dynamics: Survey of methods for simulating the activity of proteins
-
S. A. Adcock J. A. McCammon Molecular dynamics: Survey of methods for simulating the activity of proteins Chem. Rev. 2006 106 5 1589 1615
-
(2006)
Chem. Rev.
, vol.106
, Issue.5
, pp. 1589-1615
-
-
Adcock, S.A.1
McCammon, J.A.2
-
10
-
-
0001326710
-
Structure of the amide i band of peptides measured by femtosecond nonlinear-infrared spectroscopy
-
P. Hamm M. H. Lim R. M. Hochstrasser Structure of the amide I band of peptides measured by femtosecond nonlinear-infrared spectroscopy J. Phys. Chem. B 1998 102 31 6123 6138
-
(1998)
J. Phys. Chem. B
, vol.102
, Issue.31
, pp. 6123-6138
-
-
Hamm, P.1
Lim, M.H.2
Hochstrasser, R.M.3
-
11
-
-
67149138048
-
Applications of 2D IR Spectroscopy to Peptides, Proteins, and Hydrogen-Bond Dynamics
-
Y. S. Kim R. M. Hochstrasser Applications of 2D IR Spectroscopy to Peptides, Proteins, and Hydrogen-Bond Dynamics J. Phys. Chem. B 2009 113 24 8231 8251
-
(2009)
J. Phys. Chem. B
, vol.113
, Issue.24
, pp. 8231-8251
-
-
Kim, Y.S.1
Hochstrasser, R.M.2
-
12
-
-
5844362026
-
Femtosecond pump-probe spectroscopy of polyatomic molecules in condensed phases
-
Y. J. Yan S. Mukamel Femtosecond pump-probe spectroscopy of polyatomic molecules in condensed phases Phys. Rev. A: At., Mol., Opt. Phys. 1990 41 6485 6504
-
(1990)
Phys. Rev. A: At., Mol., Opt. Phys.
, vol.41
, pp. 6485-6504
-
-
Yan, Y.J.1
Mukamel, S.2
-
13
-
-
36448998898
-
2-Dimensional femtosecond vibrational spectroscopy of liquids
-
Y. Tanimura S. Mukamel 2-Dimensional femtosecond vibrational spectroscopy of liquids J. Chem. Phys. 1993 99 12 9496 9511
-
(1993)
J. Chem. Phys.
, vol.99
, Issue.12
, pp. 9496-9511
-
-
Tanimura, Y.1
Mukamel, S.2
-
14
-
-
67649261996
-
Coherent Multidimensional Optical Spectroscopy of Excitons in Molecular Aggregates; Quasiparticle versus Supermolecule Perspectives
-
D. Abramavicius B. Palmieri D. V. Voronine F. Sanda S. Mukamel Coherent Multidimensional Optical Spectroscopy of Excitons in Molecular Aggregates; Quasiparticle versus Supermolecule Perspectives Chem. Rev. 2009 109 6 2350 2408
-
(2009)
Chem. Rev.
, vol.109
, Issue.6
, pp. 2350-2408
-
-
Abramavicius, D.1
Palmieri, B.2
Voronine, D.V.3
Sanda, F.4
Mukamel, S.5
-
15
-
-
23944499045
-
Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time
-
J. R. Zheng K. Kwak J. Asbury X. Chen I. R. Piletic M. D. Fayer Ultrafast dynamics of solute-solvent complexation observed at thermal equilibrium in real time Science 2005 309 5739 1338 1343
-
(2005)
Science
, vol.309
, Issue.5739
, pp. 1338-1343
-
-
Zheng, J.R.1
Kwak, K.2
Asbury, J.3
Chen, X.4
Piletic, I.R.5
Fayer, M.D.6
-
16
-
-
0034743152
-
Fast protein dynamics probed with infrared vibrational echo experiments
-
M. D. Fayer Fast protein dynamics probed with infrared vibrational echo experiments Annu. Rev. Phys. Chem. 2001 52 315 356
-
(2001)
Annu. Rev. Phys. Chem.
, vol.52
, pp. 315-356
-
-
Fayer, M.D.1
-
17
-
-
0038571721
-
Two-dimensional femtosecond spectroscopy
-
D. M. Jonas Two-dimensional femtosecond spectroscopy Annu. Rev. Phys. Chem. 2003 54 425 463
-
(2003)
Annu. Rev. Phys. Chem.
, vol.54
, pp. 425-463
-
-
Jonas, D.M.1
-
18
-
-
0036086576
-
Coherent multidimensional vibrational spectroscopy
-
J. C. Wright Coherent multidimensional vibrational spectroscopy Int. Rev. Phys. Chem. 2002 21 2 185 255
-
(2002)
Int. Rev. Phys. Chem.
, vol.21
, Issue.2
, pp. 185-255
-
-
Wright, J.C.1
-
21
-
-
0037075409
-
Effects of vibrational frequency correlations on two-dimensional infrared spectra
-
N. H. Ge M. T. Zanni R. M. Hochstrasser Effects of vibrational frequency correlations on two-dimensional infrared spectra J. Phys. Chem. A 2002 106 6 962 972
-
(2002)
J. Phys. Chem. A
, vol.106
, Issue.6
, pp. 962-972
-
-
Ge, N.H.1
Zanni, M.T.2
Hochstrasser, R.M.3
-
22
-
-
0035443168
-
Two-dimensional infrared spectroscopy: A promising new method for the time resolution of structures
-
M. T. Zanni R. M. Hochstrasser Two-dimensional infrared spectroscopy: a promising new method for the time resolution of structures Curr. Opin. Struct. Biol. 2001 11 5 516 522
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, Issue.5
, pp. 516-522
-
-
Zanni, M.T.1
Hochstrasser, R.M.2
-
23
-
-
48249121174
-
Design of a bivalent peptide with two independent elements of secondary structure able to fold autonomously
-
U. D. Pantoja M. T. Pastor J. Salgado L. A. Pineda P. E. Pérez Design of A Bivalent Peptide With Two Independent Elements of Secondary Structure Able to Fold Autonomously J. Pept. Sci. 2008 14 845 854
-
(2008)
J. Pept. Sci.
, vol.14
, pp. 845-854
-
-
Pantoja, U.D.1
Pastor, M.T.2
Salgado, J.3
Pineda, L.A.4
Pérez, P.E.5
-
24
-
-
73549111807
-
Convergence and Heterogeneity in Peptide Folding with Replica Exchange Molecular Dynamics
-
E. Lin M. S. Shell Convergence and Heterogeneity in Peptide Folding with Replica Exchange Molecular Dynamics J. Chem. Theory Comput. 2009 5 2062 2073
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 2062-2073
-
-
Lin, E.1
Shell, M.S.2
-
25
-
-
43149107696
-
Direct Folding of Various α and β Strands Using Replica Exchange Molecular Dynamics Simulation
-
E. Kim S. Jang Y. Pak Direct Folding of Various α and β Strands Using Replica Exchange Molecular Dynamics Simulation J. Chem. Phys. 2008 128 175104
-
(2008)
J. Chem. Phys.
, vol.128
, pp. 175104
-
-
Kim, E.1
Jang, S.2
Pak, Y.3
-
26
-
-
1842479952
-
Exploring protein native states and large-scale conformational changes with a modified generalized born model
-
A. Onufriev D. Bashford D. A. Case Exploring Protein Native States and Large-Scale Conformational Changes with A Modified Generalized Born Model Proteins: Struct., Funct., Bioinf. 2004 55 383 394
-
(2004)
Proteins: Struct., Funct., Bioinf.
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
28
-
-
27744526374
-
Electrostatic DFT map for the complete vibrational amide band of NMA
-
T. Hayashi W. Zhuang S. Mukamel Electrostatic DFT map for the complete vibrational amide band of NMA J. Phys. Chem. A 2005 109 43 9747 9759
-
(2005)
J. Phys. Chem. A
, vol.109
, Issue.43
, pp. 9747-9759
-
-
Hayashi, T.1
Zhuang, W.2
Mukamel, S.3
-
29
-
-
33644914712
-
Simulation protocols for coherent femtosecond vibrational spectra of peptides
-
W. Zhuang D. Abramavicius T. Hayashi S. Mukamel Simulation protocols for coherent femtosecond vibrational spectra of peptides J. Phys. Chem. B 2006 110 7 3362 3374
-
(2006)
J. Phys. Chem. B
, vol.110
, Issue.7
, pp. 3362-3374
-
-
Zhuang, W.1
Abramavicius, D.2
Hayashi, T.3
Mukamel, S.4
-
30
-
-
3442875856
-
Two-dimensional infrared spectroscopy of isotopomers of an alanine rich alpha-helix
-
C. Fang J. Wang Y. S. Kim A. K. Charnley W. Barber-Armstrong A. B. Smith S. M. Decatur R. M. Hochstrasser Two-dimensional infrared spectroscopy of isotopomers of an alanine rich alpha-helix J. Phys. Chem. B 2004 108 29 10415 10427
-
(2004)
J. Phys. Chem. B
, vol.108
, Issue.29
, pp. 10415-10427
-
-
Fang, C.1
Wang, J.2
Kim, Y.S.3
Charnley, A.K.4
Barber-Armstrong, W.5
Smith, A.B.6
Decatur, S.M.7
Hochstrasser, R.M.8
-
31
-
-
0000333671
-
On the theory of helix-coil transition of polypeptides
-
S. Lifson A. Roig On the theory of helix-coil transition of polypeptides J. Chem. Phys. 1961 34 6 1963 1974
-
(1961)
J. Chem. Phys.
, vol.34
, Issue.6
, pp. 1963-1974
-
-
Lifson, S.1
Roig, A.2
-
32
-
-
44949226991
-
Temperature-dependent downhill unfolding of ubiquitin. I. Nanosecond-to-millisecond resolved nonlinear infrared spectroscopy
-
H. S. Chung A. Tokmakoff Temperature-dependent downhill unfolding of ubiquitin. I. Nanosecond-to-millisecond resolved nonlinear infrared spectroscopy Proteins: Struct., Funct., Bioinf. 2008 72 1 474 487
-
(2008)
Proteins: Struct., Funct., Bioinf.
, vol.72
, Issue.1
, pp. 474-487
-
-
Chung, H.S.1
Tokmakoff, A.2
-
33
-
-
43949092430
-
Two-dimensional infrared spectroscopy of photoswitchable peptides
-
P. Hamm J. Helbing J. Bredenbeck Two-dimensional infrared spectroscopy of photoswitchable peptides Annu. Rev. Phys. Chem. 2008 59 291 317
-
(2008)
Annu. Rev. Phys. Chem.
, vol.59
, pp. 291-317
-
-
Hamm, P.1
Helbing, J.2
Bredenbeck, J.3
-
34
-
-
48249140760
-
Multiple routes and structural heterogeneity in protein folding
-
J. B. Udgaonkar Multiple routes and structural heterogeneity in protein folding Annu. Rev. Biophys. 2008 37 489 510
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 489-510
-
-
Udgaonkar, J.B.1
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