메뉴 건너뛰기




Volumn 310, Issue 1-2, 2010, Pages 234-239

Development of four EST-SSR multiplex PCRs in the Pacific oyster (Crassostrea gigas) and their validation in parentage assignment

Author keywords

Crassostrea gigas; EST; Microsatellite; Multiplex PCR; Pacific oyster; Parentage assignment

Indexed keywords

BIVALVE; GENETIC MARKER; POLYMERASE CHAIN REACTION; POLYMORPHISM;

EID: 78649689773     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2010.09.037     Document Type: Article
Times cited : (31)

References (37)
  • 1
    • 0037060087 scopus 로고    scopus 로고
    • Designing aquaculture mass selection programs to avoid high inbreeding rates
    • Bentsen H.B., Olesen I. Designing aquaculture mass selection programs to avoid high inbreeding rates. Aquaculture 2002, 204:349-359.
    • (2002) Aquaculture , vol.204 , pp. 349-359
    • Bentsen, H.B.1    Olesen, I.2
  • 2
    • 0037060162 scopus 로고    scopus 로고
    • High variance in reproductive success of the Pacifc oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses
    • Boudry P., Collet B., Cornette F., Hervouet V., Bonhomme F. High variance in reproductive success of the Pacifc oyster (Crassostrea gigas, Thunberg) revealed by microsatellite-based parentage analysis of multifactorial crosses. Aquaculture 2002, 204:283-296.
    • (2002) Aquaculture , vol.204 , pp. 283-296
    • Boudry, P.1    Collet, B.2    Cornette, F.3    Hervouet, V.4    Bonhomme, F.5
  • 3
    • 42449127062 scopus 로고    scopus 로고
    • Parental relatedness and survival of Pacific Oysters from a naturalized population
    • Camara M.D., Evans S., Langdon C.J. Parental relatedness and survival of Pacific Oysters from a naturalized population. J. Shellfish Res. 2008, 27(2):323-336.
    • (2008) J. Shellfish Res. , vol.27 , Issue.2 , pp. 323-336
    • Camara, M.D.1    Evans, S.2    Langdon, C.J.3
  • 4
    • 33847668722 scopus 로고    scopus 로고
    • Microsatellite null alleles and estimation of population differentiation
    • Chapuis M.P., Estoup A. Microsatellite null alleles and estimation of population differentiation. Mol. Biol. Evol. 2007, 24(3):621-631.
    • (2007) Mol. Biol. Evol. , vol.24 , Issue.3 , pp. 621-631
    • Chapuis, M.P.1    Estoup, A.2
  • 5
    • 33846409831 scopus 로고    scopus 로고
    • Summer mortality of hatchery-produced Pacific oyster spat (Crassostrea gigas): I. Estimation of genetic parameters for survival and growth
    • Dégremont L., Ernande B., Bédier E., Boudry P. Summer mortality of hatchery-produced Pacific oyster spat (Crassostrea gigas): I. Estimation of genetic parameters for survival and growth. Aquaculture 2007, 262:41-53.
    • (2007) Aquaculture , vol.262 , pp. 41-53
    • Dégremont, L.1    Ernande, B.2    Bédier, E.3    Boudry, P.4
  • 6
    • 74149091533 scopus 로고    scopus 로고
    • Summer mortality of hatchery-produced Pacific oyster spat (Crassostrea gigas). II. Response to selection for survival and its influence on growth and yield
    • Dégremont L., Bédier E., Boudry P. Summer mortality of hatchery-produced Pacific oyster spat (Crassostrea gigas). II. Response to selection for survival and its influence on growth and yield. Aquaculture 2010, 299:21-29.
    • (2010) Aquaculture , vol.299 , pp. 21-29
    • Dégremont, L.1    Bédier, E.2    Boudry, P.3
  • 8
    • 33750499125 scopus 로고    scopus 로고
    • Effects of genotype×environment interactions on the selection of broadly adapted Pacific oysters (Crassostrea gigas)
    • Evans S., Langdon C. Effects of genotype×environment interactions on the selection of broadly adapted Pacific oysters (Crassostrea gigas). Aquaculture 2006, 261:522-534.
    • (2006) Aquaculture , vol.261 , pp. 522-534
    • Evans, S.1    Langdon, C.2
  • 12
    • 84966479970 scopus 로고
    • Reproductive potential and genetics of triploid Pacific oysters, Crassostrea gigas (Thunberg)
    • Guo X., Standish K., Allen J.R. Reproductive potential and genetics of triploid Pacific oysters, Crassostrea gigas (Thunberg). Biol. Bull. 1994, 187:309-318.
    • (1994) Biol. Bull. , vol.187 , pp. 309-318
    • Guo, X.1    Standish, K.2    Allen, J.R.3
  • 13
    • 4344664172 scopus 로고    scopus 로고
    • Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas
    • Hubert S., Hedgecock D. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 2004, 168:351-362.
    • (2004) Genetics , vol.168 , pp. 351-362
    • Hubert, S.1    Hedgecock, D.2
  • 14
    • 33847074909 scopus 로고    scopus 로고
    • Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment
    • Kalinowski S.T., Taper M.L., Marshall T.C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol. Ecol. 2007, 16:1099-1106.
    • (2007) Mol. Ecol. , vol.16 , pp. 1099-1106
    • Kalinowski, S.T.1    Taper, M.L.2    Marshall, T.C.3
  • 15
    • 0037437036 scopus 로고    scopus 로고
    • Yields of cultured Pacific oysters Crassostrea gigas Thunberg improved after one generation of selection
    • Langdon C., Evans F., Jacobson D., Blouin M. Yields of cultured Pacific oysters Crassostrea gigas Thunberg improved after one generation of selection. Aquaculture 2003, 220:227-244.
    • (2003) Aquaculture , vol.220 , pp. 227-244
    • Langdon, C.1    Evans, F.2    Jacobson, D.3    Blouin, M.4
  • 16
    • 0037792879 scopus 로고    scopus 로고
    • Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas
    • Li G., Hubert S., Bucklin K., Ribes V., Hedgecock D. Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas. Mol. Ecol. Notes 2003, 3:228-232.
    • (2003) Mol. Ecol. Notes , vol.3 , pp. 228-232
    • Li, G.1    Hubert, S.2    Bucklin, K.3    Ribes, V.4    Hedgecock, D.5
  • 17
    • 33747365520 scopus 로고    scopus 로고
    • Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China
    • Li Q., Yu H., Yu R.H. Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China. Aquaculture 2006, 259:95-102.
    • (2006) Aquaculture , vol.259 , pp. 95-102
    • Li, Q.1    Yu, H.2    Yu, R.H.3
  • 18
    • 78649713554 scopus 로고    scopus 로고
    • Inheritance of 15 microsatellites in the Pacific oyster Crassostrea gigas: segregation and null allele identification for linkage analysis
    • Li L., Guo X.M., Zhang G.F. Inheritance of 15 microsatellites in the Pacific oyster Crassostrea gigas: segregation and null allele identification for linkage analysis. Chin. J. Oceanol. Limnol. 2009, 27:74-79.
    • (2009) Chin. J. Oceanol. Limnol. , vol.27 , pp. 74-79
    • Li, L.1    Guo, X.M.2    Zhang, G.F.3
  • 19
    • 67749118477 scopus 로고    scopus 로고
    • Microsatellites within genes and ESTs of the Pacific oyster Crassostrea gigas and their transferability in five other Crassostrea species
    • Li Q., Liu S.K., Kong L.F. Microsatellites within genes and ESTs of the Pacific oyster Crassostrea gigas and their transferability in five other Crassostrea species. Electron. J. Biotechnol. 2009, 12. 10.2225/vol12-issue3-fulltext-9.
    • (2009) Electron. J. Biotechnol. , vol.12
    • Li, Q.1    Liu, S.K.2    Kong, L.F.3
  • 20
    • 70350408727 scopus 로고    scopus 로고
    • Parentage determination and effective population size estimation in mass spawning Pacific oyster, Crassostrea gigas, based on microsatellite analysis
    • Li R.H., Li Q., Yu R.H. Parentage determination and effective population size estimation in mass spawning Pacific oyster, Crassostrea gigas, based on microsatellite analysis. J. World Aquac. Soc. 2009, 40:667-677.
    • (2009) J. World Aquac. Soc. , vol.40 , pp. 667-677
    • Li, R.H.1    Li, Q.2    Yu, R.H.3
  • 21
    • 0033609390 scopus 로고    scopus 로고
    • Transcribed dinucleotide microsatellites and their associated genes from channel catfish, Ictalurus punctatus
    • Liu Z.J., Tan G., Li P., Dunham R.A. Transcribed dinucleotide microsatellites and their associated genes from channel catfish, Ictalurus punctatus. Biochem. Biophys. Res. Commun. 1999, 259:190-194.
    • (1999) Biochem. Biophys. Res. Commun. , vol.259 , pp. 190-194
    • Liu, Z.J.1    Tan, G.2    Li, P.3    Dunham, R.A.4
  • 22
    • 0032077236 scopus 로고    scopus 로고
    • Statistical confidence for likelihood-based paternity inference in natural populations
    • Marshall T.C., Slate J., Kruuk L.E.B., Pemberton J.M. Statistical confidence for likelihood-based paternity inference in natural populations. Mol. Ecol. 1998, 7:639-655.
    • (1998) Mol. Ecol. , vol.7 , pp. 639-655
    • Marshall, T.C.1    Slate, J.2    Kruuk, L.E.B.3    Pemberton, J.M.4
  • 23
    • 47249085122 scopus 로고    scopus 로고
    • P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment
    • Matson S.E., Camara M.D., Eichert W., Banks M.A. P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment. Mol. Ecol. Res. 2008, 8(4):765-768.
    • (2008) Mol. Ecol. Res. , vol.8 , Issue.4 , pp. 765-768
    • Matson, S.E.1    Camara, M.D.2    Eichert, W.3    Banks, M.A.4
  • 24
    • 0034493958 scopus 로고    scopus 로고
    • The transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas): selection and null alleles
    • McGoldrick D.J., Hedgecock D., English L.J., Baoprasertkul P., Ward R.D. The transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas): selection and null alleles. J. Shellfish Res. 2000, 19:779-788.
    • (2000) J. Shellfish Res. , vol.19 , pp. 779-788
    • McGoldrick, D.J.1    Hedgecock, D.2    English, L.J.3    Baoprasertkul, P.4    Ward, R.D.5
  • 25
    • 0013570935 scopus 로고
    • Effects of artificial eutrophication on the metabolism of the Japanese oyster Crassostrea gigas
    • Mori K. Effects of artificial eutrophication on the metabolism of the Japanese oyster Crassostrea gigas. Mar. Biol. 1979, 53:361-369.
    • (1979) Mar. Biol. , vol.53 , pp. 361-369
    • Mori, K.1
  • 26
    • 0034142217 scopus 로고    scopus 로고
    • Parentage and relatedness determination in farmed Atlantic salmon (Salmo salar) using microsatellite markers
    • Norris A.T., Bradley D.G., Cunningham E.P. Parentage and relatedness determination in farmed Atlantic salmon (Salmo salar) using microsatellite markers. Aquaculture 2000, 182:73-83.
    • (2000) Aquaculture , vol.182 , pp. 73-83
    • Norris, A.T.1    Bradley, D.G.2    Cunningham, E.P.3
  • 27
    • 33748101548 scopus 로고    scopus 로고
    • EST Databases as a source for molecular markers: Lessons from Helianthus
    • Pashley C.H., Ellis J.R., McCauley D.E., Burke J.M. EST Databases as a source for molecular markers: Lessons from Helianthus. J. Hered. 2006, 97(4):381-388.
    • (2006) J. Hered. , vol.97 , Issue.4 , pp. 381-388
    • Pashley, C.H.1    Ellis, J.R.2    McCauley, D.E.3    Burke, J.M.4
  • 28
    • 0001274111 scopus 로고
    • A comparison of the gametogenetic cycle between the Pacific oyster Crassostrea gigas and the suminoe oyster Crassostrea rivularis in Washington state
    • Perdue J., Erickson G. A comparison of the gametogenetic cycle between the Pacific oyster Crassostrea gigas and the suminoe oyster Crassostrea rivularis in Washington state. Aquaculture 1984, 37:231-237.
    • (1984) Aquaculture , vol.37 , pp. 231-237
    • Perdue, J.1    Erickson, G.2
  • 29
    • 33747265129 scopus 로고    scopus 로고
    • Development of a microsatellite multiplex PCR for Senegalese sole (Solea senegalensis) and its application to broodstock management
    • Porta J., Porta J.M., Martinez-Rotriguez G., Alvarez M.D.C. Development of a microsatellite multiplex PCR for Senegalese sole (Solea senegalensis) and its application to broodstock management. Aquaculture 2006, 56:159-166.
    • (2006) Aquaculture , vol.56 , pp. 159-166
    • Porta, J.1    Porta, J.M.2    Martinez-Rotriguez, G.3    Alvarez, M.D.C.4
  • 31
    • 65249146085 scopus 로고    scopus 로고
    • Identification and characterization of 18 novel polymorphic microsatellite makers derived from expressed sequence tags in the Pacific oyster Crassostrea gigas
    • Sauvage C., Boudry P., Lapègue S. Identification and characterization of 18 novel polymorphic microsatellite makers derived from expressed sequence tags in the Pacific oyster Crassostrea gigas. Mol. Ecol. Res. 2009, 9:853-855.
    • (2009) Mol. Ecol. Res. , vol.9 , pp. 853-855
    • Sauvage, C.1    Boudry, P.2    Lapègue, S.3
  • 32
    • 77954587315 scopus 로고    scopus 로고
    • Quantitative Trait Loci for resistance to summer mortality and OsHV1 load in the Pacific oyster (Crassostrea gigas)
    • Sauvage C., Boudry P., De Koning D.J., Haley C.S., Heurtebise S., Lapègue S. Quantitative Trait Loci for resistance to summer mortality and OsHV1 load in the Pacific oyster (Crassostrea gigas). Anim. Genet. 2010, 41:390-399.
    • (2010) Anim. Genet. , vol.41 , pp. 390-399
    • Sauvage, C.1    Boudry, P.2    De Koning, D.J.3    Haley, C.S.4    Heurtebise, S.5    Lapègue, S.6
  • 35
    • 15944372316 scopus 로고    scopus 로고
    • A combined microsatellite multiplexing and boiling DNA extraction method for high throughput parentage analyses in the Pacific Oyster (Crassostrea gigas)
    • Taris N., Baron S., Sharbel T.F., Sauvage C., Boudry P. A combined microsatellite multiplexing and boiling DNA extraction method for high throughput parentage analyses in the Pacific Oyster (Crassostrea gigas). Aquac. Res. 2005, 36:516-518.
    • (2005) Aquac. Res. , vol.36 , pp. 516-518
    • Taris, N.1    Baron, S.2    Sharbel, T.F.3    Sauvage, C.4    Boudry, P.5
  • 36
    • 34548257178 scopus 로고    scopus 로고
    • EST-SSR markers from the Pacific oyster, Crassostrea gigas
    • Yu H., Li Q. EST-SSR markers from the Pacific oyster, Crassostrea gigas. Mol. Ecol. Notes 2007, 7:860-862.
    • (2007) Mol. Ecol. Notes , vol.7 , pp. 860-862
    • Yu, H.1    Li, Q.2
  • 37
    • 41149100524 scopus 로고    scopus 로고
    • Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas)
    • Yu H., Li Q. Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas). J. Hered. 2008, 99(2):208-214.
    • (2008) J. Hered. , vol.99 , Issue.2 , pp. 208-214
    • Yu, H.1    Li, Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.