Structure of amylase genes in populations of pacific cupped oyster (Crassostrea gigas): Tissue expression and allelic polymorphism

Marine Biotechnology

Volumn 5, Issue 4, 2003, Pages 360-372

  Sellos, D ^a   Moal, J ^b   Degremont, L ^b   Huvet, A ^b   Daniel, J Y ^b   Nicoulaud, S ^a   Boudry, P ^b   Samain, J F ^b   Van Wormhoudt, A ^a  

^a Stn Biol Mar Mus Natl Hist N   (France)

^b IFREMER   (France)

Author keywords

Allelic polymorphism; Growth selection; Microsatellite genetic markers; Oyster populations

Indexed keywords

GENETIC MARKER; MOLLUSC; POLYMORPHISM; POPULATION GENETICS;

ALLELES; AMYLASES; ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA PRIMERS; DNA, COMPLEMENTARY; FRANCE; GENE EXPRESSION PROFILING; GENE FREQUENCY; GENETICS, POPULATION; MOLECULAR SEQUENCE DATA; OSTREIDAE; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

BIVALVIA; CRASSOSTREA; CRASSOSTREA GIGAS; INVERTEBRATA; MOLLUSCA; OSTREIDAE;

EID: 0142025336     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-002-0089-7     Document Type: Article

References (35)

1. Andersson, S.G., Zomorodipour, A., Andersson, J.O., Sicheritz-Ponten, T., Alsmark, U.C., Podowski, R.M., Naslund, A.K., Eriksson, A.A.S., Winkler, H.H., and Kurland, C.G. (1998). The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 12:133-140.
2. Belkir, K., Borsa, P., Goudet, J., Chikhi, L., and Bonhomme, F. (1996). Genetix, logiciel sous windows TM pour la génétique des populations. Montpellier, France: Laboratoire Génome et Populations, CNRS UPR 9060, Université de Montpellier II.
3. Boer, P.M., and Hickey, D.A. (1986). The alpha-amylase gene in Drosophila melanogaster: nucleotide sequence, gene structure and expression motifs. Nucleic Acids Res 14:8399-8411.
4. Cariou, M.L., and Da Lage, J.L. (1993). Isozymes polymorphisms. In: Drosophila ananassae, Genetical and Biological Aspects, Tobari, Y.N., ed. Tokyo: Japan Scientific Societies Press, 160-171.
5. Choi, J.I., and Yamazaki, T. (1994). Molecular analysis of cis-regulatory sequences of the α-amylase gene in D. melanogaster: a short 5′-flanking region of Amy distal gene is required for full expression of Amy proximal gene. Jpn J Genet 69:619-635.
6. Dainou, O., Cariou, M.L., Goux, J.M., and David, J.R. (1993). Amylase polymorphism in Drosophila melanogaster: haplotype frequencies in tropical African and American populations. Genet Selection Evol 25:133-155.
7. Da Lage, J.L., Lemeunier, F., Cariou, M.L., and David, J.R. (1992). Multiple amylase genes in Drosophila ananassae and related species. Genet Res Camb 59:85-92.
8. Da Lage, J.L., Klarenberg, A., and Cariou, M.L. (1996). Variation in sex-, stage- and tissue-specific expression of the amylase genes in Drosophila ananassae. Heredity 76:9-18.
9. Da Lage, J.L., Van Wormhoudt, A., and Cariou, M.L. (2001). Diversity and evolution of α-amylase genes in animals. Biologia Bratislava 57(11).
10. FAO (1999). Year book of fisheries statistics. World aquaculture production 88(2):178 p.
11. Douglas, S.E., Mandla, S., and Gallant, J.W. (2000). Molecular analysis of the amylase gene and its expression during development in the winter flounder, Pleuronectes americanus. Aquaculture 190:247-260.
12. Grossman, G.L., and James, A.A. (1993). The salivary gland of the vector mosquito, Aedes aegypti; expressed a novel member of the amylase gene family. Insect Mol Biol 1:223-232.
13. Grossman, G.L., Campos, Y., Severson, D.W., and James, A.A. (1997). Evidence for two distinct members of the amylase gene family in the yellow fever mosquito, Aedes aegypti. Insect Mol Biol 27:769-781.
14. Gumucio, D.L., Wiebauer, K., Caldwell, R.M., Samuelson, L.C., and Meisler, M.H. (1988). Concerted evolution of human amylase genes. Mol Cell Biol 8:1197-1205.
15. Hagenbuchle, O., Bovery, R., and Young, R.A. (1980). Tissue-specific expression of mouse α-amylase genes: nucleotide sequence of isoenzyme mRNAs from pancreas and salivary gland. Cell 21:179-187.
16. Hansen, M.M., Mensberg, K.L.D., and Berg, S. (1999). Postglacial recolonizatlon patterns and genetic relationships among whitefish (Coregonus sp.) populations in Denmark, inferred from mitochondrial DNA and microsatellite markers. Mol Ecol 8(2):239-252.
17. Henry, M., Benlimane, N., Boucaud-Camou, E., Mathieu, M., Donval, A., and Van Wormhoudt, A. (1993). The amylase secreting cells of the stomach of the scallop, Pecten maximus, ultrastructural, immunohistochemical and immunocytochemical characterizations. Tissue Cell 25:537-548.
18. Héral, M. (1989). Traditional oyster culture in France. Aquaculture 1:342-387
19. Huvet, A., Lapègue, S., Magoulas, A., and Boudry, P. (2000). Mitochondrial and nuclear DNA phylogeography of Crassostrea angulata, the Portuguese oyster endangered in Europe. Conservation Genet 1(3):251-262.
20. Inomata, N., and Yamazaki, T. (2000). Evolution of nucleotide substitutions and gene regulation in the amylase multigenes in Drosophila kikkawai and its sibling species. Mol Biol Evol 17(4):601-615.
21. Le Moine, S., Sellos, D., Moal, J., Daniel, J.Y., San Juan Serrano, F., Samain, J.F., and Van Wormhoudt, A. (1997). Amylase in Pecten maximus (Mollusca, bivalves): protein and cDNA characterization; quantification of the expression in the digestive gland. Mol Mar Biol Biotechnol 6(3):228-237.
22. Moal, J., Daniel, J.Y., Sellos, D.Y., Van Wormhoudt, A., and Samain, J.F. (2000). Amylase mRNA expression in Crassostrea gigas during feeding cycles. J Comp Physiol B 170:21-26.
23. Nakamura, Y., Ogama, M., Nishida, T., Emi, M., Kosaki, G., Himeno, S., and Matsubara, K. (1984). Sequence of cDNAs for human salivary and pancreatic α-amylases. Gene 28:263-270.
24. Park, K.S., Song, J.I., Choe, B.L., and Kim, S.J. (1999). Amylase polymorphism of Littorina brevicula from polluted and unpolluted sites, Korea BULL. Environ. Contamination Toxicol 63:633-638.
25. Pittet, A.C., and Schibler, U. (1985). Mouse α-amylase loci; AMY-1 and AMY-2, are closely linked. J Mol Biol 182:359-365.
26. Renault, T., and Cochennec, N. (1994). Rickettsia-like organisms in the cytoplasm of gill epithelial cells of the Pacific oyster. J Invertebrate Pathol 64(2):160-162.
27. Rodenburg, K.W., Juge, N., Guo, X.J., Sogaard, M., Chaix, J.C., and Svensson, B. (1994). Domain protruding at the third β strand of the α/β barrel in barley α-amylase confers distinct isozyme-specific properties. Eur J Biochem 221:277-284.
28. Shibata, H., and Yamazaki, T. (1995). Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation. Genetics 141:223-236.
29. Singh, S.M., and Green, R.R. (1984). Excess of allozyme homozygoty in marine molluscs and its possible biological significance. Malacologia 25:569-581.
30. Unger, M.E., and Roesijadi, G. (1993). Sensitive assay for molluscan metallothionein induction based on ribonuclease protection and molecular titration of metallothionein and actin mRNAs. Mol Mar Biol Biotechnol 2(5):319-324.
31. Van Wormhoudt, A., and Sellos, D. (1996). Cloning and sequencing analysis of three amylase cDNAs in the shrimp Penaeus vannamei (Crustacea Decapoda), evolutionary aspects. J Mol Evol 42:543-551.
32. Weir, B.S., and Cockerham, C.C. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
33. Wright, S. (1951). The genetical structure of populations. Annals of eugenics 15:323-354.
34. Xu, B., Janson, J.-J., and Sellos, D. (2001). Cloning and sequencing of a molluscan endo-B-1,4-glucanase gene from the blue mussel, Mytilus edulis. Eur J Biochem 268:3718-3727.
35. Zouros, E., and Foltz, D.W. (1984). Minimal selection requirements for the correlation between heterozygoty and growth, and for the deficiency of heterozygotes, in oyster populations. Dev Genet 4:393-405.