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Volumn 99, Issue 2, 2008, Pages 208-214

Exploiting EST databases for the development and characterization of EST-SSRs in the Pacific oyster (Crassostrea gigas)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; CONTROLLED STUDY; CRASSOSTREA GIGAS; DINUCLEOTIDE REPEAT; DNA POLYMORPHISM; GENE FREQUENCY; GENE FUNCTION; GENE LOCUS; GENE SEQUENCE; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; OYSTER; PRIORITY JOURNAL; SEGREGATION ANALYSIS; SIMPLE SEQUENCE REPEAT;

EID: 41149100524     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/esm124     Document Type: Article
Times cited : (45)

References (35)
  • 2
    • 0036191614 scopus 로고    scopus 로고
    • The application of SSRs characterized for grape (Vitis vinifera) to conservation studies in Vitaceae
    • Arnold C, Rossetto M, McNally J, Henry RJ. 2002. The application of SSRs characterized for grape (Vitis vinifera) to conservation studies in Vitaceae. Am J Bot. 89:22-28.
    • (2002) Am J Bot , vol.89 , pp. 22-28
    • Arnold, C.1    Rossetto, M.2    McNally, J.3    Henry, R.J.4
  • 3
    • 0034983079 scopus 로고    scopus 로고
    • Kinship analysis of Pacific salmon: Insights into mating, homing, and timing of reproduction
    • Bentzen P, Olsen JB, McLean JE, Seamons TR, Quinn TR. 2001. Kinship analysis of Pacific salmon: insights into mating, homing, and timing of reproduction. J Hered. 92:127-136.
    • (2001) J Hered , vol.92 , pp. 127-136
    • Bentzen, P.1    Olsen, J.B.2    McLean, J.E.3    Seamons, T.R.4    Quinn, T.R.5
  • 5
    • 33847339718 scopus 로고    scopus 로고
    • Eight PCR primers to amplify EST-linked microsatellites in the Eastern oyster, Crassostrea virginica genome
    • Carlsson J, Reece KS. 2007. Eight PCR primers to amplify EST-linked microsatellites in the Eastern oyster, Crassostrea virginica genome. Mol Ecol Notes. 7:257-259.
    • (2007) Mol Ecol Notes , vol.7 , pp. 257-259
    • Carlsson, J.1    Reece, K.S.2
  • 7
    • 0037346501 scopus 로고    scopus 로고
    • MICROSATELLITE ANALYSER (MSA): A platform independent analysis tool for large microsatellite data sets
    • Dieringer D, Schlotterer C. 2003. MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes. 3:167-169.
    • (2003) Mol Ecol Notes , vol.3 , pp. 167-169
    • Dieringer, D.1    Schlotterer, C.2
  • 9
    • 0347634449 scopus 로고    scopus 로고
    • Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat
    • Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS. 2003. Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics. 270:315-323.
    • (2003) Mol Genet Genomics , vol.270 , pp. 315-323
    • Gupta, P.K.1    Rustgi, S.2    Sharma, S.3    Singh, R.4    Kumar, N.5    Balyan, H.S.6
  • 10
    • 4644315697 scopus 로고    scopus 로고
    • Widespread null alleles and poor cross-species amplification of microsatellite DNA cloned from the Pacific oyster, Crassostrea gigas
    • Hedgecock D, Li G, Hubert S, Bucklin K, Ribes V. 2004. Widespread null alleles and poor cross-species amplification of microsatellite DNA cloned from the Pacific oyster, Crassostrea gigas. J Shellfish Res. 23:379-385.
    • (2004) J Shellfish Res , vol.23 , pp. 379-385
    • Hedgecock, D.1    Li, G.2    Hubert, S.3    Bucklin, K.4    Ribes, V.5
  • 11
    • 4344664172 scopus 로고    scopus 로고
    • Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas
    • Hubert S, Hedgecock D. 2004. Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics. 168:351-362.
    • (2004) Genetics , vol.168 , pp. 351-362
    • Hubert, S.1    Hedgecock, D.2
  • 12
    • 0031843453 scopus 로고    scopus 로고
    • The molecular basis of a microsatellite null allele from the white sands pupfish
    • Jones AG, Stockwell CA, Walker D, Avise JC. 1998. The molecular basis of a microsatellite null allele from the white sands pupfish. J Hered. 89:339-342.
    • (1998) J Hered , vol.89 , pp. 339-342
    • Jones, A.G.1    Stockwell, C.A.2    Walker, D.3    Avise, J.C.4
  • 13
    • 0034815730 scopus 로고    scopus 로고
    • High genetic load in the Pacific oyster Crassostrea gigas
    • Launey S, Hedgecock D. 2001. High genetic load in the Pacific oyster Crassostrea gigas. Genetics. 159:255-265.
    • (2001) Genetics , vol.159 , pp. 255-265
    • Launey, S.1    Hedgecock, D.2
  • 14
    • 0037792879 scopus 로고    scopus 로고
    • Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas
    • Li G, Hubert S, Bucklin K, Ribes V, Hedgecock D. 2003. Characterization of 79 microsatellite DNA markers in the Pacific oyster Crassostrea gigas. Mol Ecol Notes. 3:228-232.
    • (2003) Mol Ecol Notes , vol.3 , pp. 228-232
    • Li, G.1    Hubert, S.2    Bucklin, K.3    Ribes, V.4    Hedgecock, D.5
  • 15
    • 33645311801 scopus 로고    scopus 로고
    • Microsatellite analysis of gynogenetic families in the Pacific oyster, Crassostrea gigas
    • Li Q, Kijima A. 2006. Microsatellite analysis of gynogenetic families in the Pacific oyster, Crassostrea gigas. J Exp Mar Biol Ecol. 331:1-8.
    • (2006) J Exp Mar Biol Ecol , vol.331 , pp. 1-8
    • Li, Q.1    Kijima, A.2
  • 16
    • 0142120622 scopus 로고    scopus 로고
    • Inheritance ofmicrosatellite DNA markers in the Pacific abalone Haliotis discus hannai
    • Li Q, Park C, Kobayashi T, Kijima A. 2003. Inheritance ofmicrosatellite DNA markers in the Pacific abalone Haliotis discus hannai. Mar Biotechnol. 5:331-338.
    • (2003) Mar Biotechnol , vol.5 , pp. 331-338
    • Li, Q.1    Park, C.2    Kobayashi, T.3    Kijima, A.4
  • 17
    • 0242540948 scopus 로고    scopus 로고
    • Allelic transmission of microsatellites and application to kinship analysis in newly hatched Pacific abalone larvae
    • Li Q, Park C, Kijima A. 2003. Allelic transmission of microsatellites and application to kinship analysis in newly hatched Pacific abalone larvae. Fish Sci. 69:883-889.
    • (2003) Fish Sci , vol.69 , pp. 883-889
    • Li, Q.1    Park, C.2    Kijima, A.3
  • 18
    • 33747365520 scopus 로고    scopus 로고
    • Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China
    • Li Q, Yu H, Yu R. 2006. Genetic variability assessed by microsatellites in cultured populations of the Pacific oyster (Crassostrea gigas) in China. Aquaculture. 259:95-102.
    • (2006) Aquaculture , vol.259 , pp. 95-102
    • Li, Q.1    Yu, H.2    Yu, R.3
  • 19
    • 4043111253 scopus 로고    scopus 로고
    • Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs
    • Liewlaksaneeyanawin C, Ritland CE, El-Kassaby YA, Ritland K. 2004. Single-copy, species-transferable microsatellite markers developed from loblolly pine ESTs. Theor Appl Genet. 109:361-369.
    • (2004) Theor Appl Genet , vol.109 , pp. 361-369
    • Liewlaksaneeyanawin, C.1    Ritland, C.E.2    El-Kassaby, Y.A.3    Ritland, K.4
  • 20
    • 33746237725 scopus 로고    scopus 로고
    • Development of polymorphic expressed sequence tag-derived microsatellites for the extension of the genetic linkage map of the black tiger shrimp (Penaeus monodon)
    • Maneeruttanarungroj C, Pongsomboon S, Wuthisuthimethavee S, Klinbunga S, Wilson KJ, Swan J, Li Y, Whan V, Chu KH, Li CP, et al. 2006. Development of polymorphic expressed sequence tag-derived microsatellites for the extension of the genetic linkage map of the black tiger shrimp (Penaeus monodon). Anim Genet. 37:363-368.
    • (2006) Anim Genet , vol.37 , pp. 363-368
    • Maneeruttanarungroj, C.1    Pongsomboon, S.2    Wuthisuthimethavee, S.3    Klinbunga, S.4    Wilson, K.J.5    Swan, J.6    Li, Y.7    Whan, V.8    Chu, K.H.9    Li, C.P.10
  • 21
    • 0034493958 scopus 로고    scopus 로고
    • The transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas): Selection and null alleles
    • McGoldrick DJ, Hedgecock D, English LJ, Baoprasertkul P, Ward RD. 2000. The transmission of microsatellite alleles in Australian and North American stocks of the Pacific oyster (Crassostrea gigas): selection and null alleles. J Shellfish Res. 19:779-788.
    • (2000) J Shellfish Res , vol.19 , pp. 779-788
    • McGoldrick, D.J.1    Hedgecock, D.2    English, L.J.3    Baoprasertkul, P.4    Ward, R.D.5
  • 22
    • 33748967940 scopus 로고    scopus 로고
    • SSR mining in coffee tree EST databases: Potential use of EST-SSRs as markers for the Coffea genus
    • Poncet V, Rondeau M, Tranchant C, Cayrel A, Hamon S, Kochko A, Hamon P. 2006. SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus. Mol Gen Genomics. 276:436-449.
    • (2006) Mol Gen Genomics , vol.276 , pp. 436-449
    • Poncet, V.1    Rondeau, M.2    Tranchant, C.3    Cayrel, A.4    Hamon, S.5    Kochko, A.6    Hamon, P.7
  • 23
    • 0030183057 scopus 로고    scopus 로고
    • Polymorphism revealed by simple sequence repeats
    • Powell W, Machray GC, Provan J. 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci. 1:215-222.
    • (1996) Trends Plant Sci , vol.1 , pp. 215-222
    • Powell, W.1    Machray, G.C.2    Provan, J.3
  • 24
    • 0029346978 scopus 로고
    • Resolving genetic relationships with microsatellite markers: A parentage testing system for the swallow Hirundo rustica
    • Primmer CR, Møller AP, Ellegren H. 1995. Resolving genetic relationships with microsatellite markers: a parentage testing system for the swallow Hirundo rustica. Mol Ecol. 4:493-498.
    • (1995) Mol Ecol , vol.4 , pp. 493-498
    • Primmer, C.R.1    Møller, A.P.2    Ellegren, H.3
  • 25
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR. 1989. Analyzing tables of statistical tests. Evolution. 43:223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 27
    • 13244252560 scopus 로고    scopus 로고
    • An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.)
    • Saha MC, Mian R, Zwonitzer JC, Chekhovskiy K, Hopkins AA. 2005. An SSR- and AFLP-based genetic linkage map of tall fescue (Festuca arundinacea Schreb.). Theor Appl Genet. 110:323-336.
    • (2005) Theor Appl Genet , vol.110 , pp. 323-336
    • Saha, M.C.1    Mian, R.2    Zwonitzer, J.C.3    Chekhovskiy, K.4    Hopkins, A.A.5
  • 28
    • 0041974595 scopus 로고    scopus 로고
    • Development of novel microsatellite DNA markers from the Pacific oyster Crassostrea gigas
    • Sekino M, Hamaguchi M, Aranishi F, Okoshi K. 2003. Development of novel microsatellite DNA markers from the Pacific oyster Crassostrea gigas. Mar Biotechnol. 5:227-233.
    • (2003) Mar Biotechnol , vol.5 , pp. 227-233
    • Sekino, M.1    Hamaguchi, M.2    Aranishi, F.3    Okoshi, K.4
  • 29
    • 4344695759 scopus 로고    scopus 로고
    • Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus)
    • Serapion J, Kucuktas H, Feng J, Liu Z. 2004. Bioinformatic mining of type I microsatellites from expressed sequence tags of channel catfish (Ictalurus punctatus). Mar Biotechnol. 6:364-377.
    • (2004) Mar Biotechnol , vol.6 , pp. 364-377
    • Serapion, J.1    Kucuktas, H.2    Feng, J.3    Liu, Z.4
  • 31
    • 11344276529 scopus 로고    scopus 로고
    • Genic microsatellite markers in plants: Features and applications
    • Varshney RK, Graner A, Sorrells ME. 2005. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 23:48-54.
    • (2005) Trends Biotechnol , vol.23 , pp. 48-54
    • Varshney, R.K.1    Graner, A.2    Sorrells, M.E.3
  • 32
    • 33847351223 scopus 로고    scopus 로고
    • A set of EST-SSRs isolated from peach fruit transcriptome and their transportability across Prunus species
    • Vendramin E, Dettori MT, Giovinazzi J, Micali S, Quarta R, Verde I. 2007. A set of EST-SSRs isolated from peach fruit transcriptome and their transportability across Prunus species. Mol Ecol Notes. 7:307-310.
    • (2007) Mol Ecol Notes , vol.7 , pp. 307-310
    • Vendramin, E.1    Dettori, M.T.2    Giovinazzi, J.3    Micali, S.4    Quarta, R.5    Verde, I.6
  • 34
    • 23944472335 scopus 로고    scopus 로고
    • Polymorphic EST-SSR markers and their mode Fenneropenaeus chinensis
    • Wang H, Li F, Xiang J. 2005. Polymorphic EST-SSR markers and their mode Fenneropenaeus chinensis. Aquaculture. 249:107-114.
    • (2005) Aquaculture , vol.249 , pp. 107-114
    • Wang, H.1    Li, F.2    Xiang, J.3
  • 35
    • 34548257178 scopus 로고    scopus 로고
    • EST-SSR markers from the Pacific oyster, Crassostrea gigas
    • Yu H, Li Q. 2007. EST-SSR markers from the Pacific oyster, Crassostrea gigas. Mol Ecol Notes. 7:860-862.
    • (2007) Mol Ecol Notes , vol.7 , pp. 860-862
    • Yu, H.1    Li, Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.