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Volumn 58, Issue 23, 2010, Pages 12307-12312

Cod (Gadus morhua) muscle proteome cataloging using 1D-PAGE protein separation, nano-liquid chromatography peptide fractionation, and linear trap quadrupole (LTQ) mass spectrometry

Author keywords

Atlantic cod; LC MSMS; muscle; proteome analysis; SDS PAGE

Indexed keywords

ATLANTIC COD; BIOMARKER IDENTIFICATION; COD MUSCLES; DATA SETS; ECONOMIC VALUES; ENVIRONMENTAL CONDITIONS; EXPRESSED SEQUENCE TAGS; FOOD SOURCES; GAIN INSIGHT; INDUSTRIAL PROCESSING; LC-MSMS; MEAT QUALITY; MUSCLE TISSUES; NANO LIQUID CHROMATOGRAPHY; NANOFLOWS; PEPTIDE SEPARATION; PHYSIOLOGICAL STATUS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN DATABASE; PROTEIN SEPARATIONS; PROTEOME ANALYSIS; PROTEOMES; PROTEOMICS; QUADRUPOLE MASS SPECTROMETRY; QUADRUPOLES; SDS-PAGE; ZEBRAFISH;

EID: 78649644187     PISSN: 00218561     EISSN: 15205118     Source Type: Journal    
DOI: 10.1021/jf103009r     Document Type: Article
Times cited : (17)

References (35)
  • 1
    • 78649645273 scopus 로고    scopus 로고
    • FAO Fisheries and Aquaculture Department, (accessed February).
    • FAO Fisheries and Aquaculture Department, http://www.fao.org/fishery/ species/2218 (accessed February 2009).
    • (2009)
  • 3
    • 78649638312 scopus 로고    scopus 로고
    • The Atlantic cod; The potential for farming in Shetland
    • Walden, J. The Atlantic cod; the potential for farming in Shetland. Fish. Inf. Note 2000, 3.
    • (2000) Fish. Inf. Note , vol.3
    • Walden, J.1
  • 4
    • 78649637350 scopus 로고    scopus 로고
    • Atlantic cod genomics and broodstock development, (accessed May)
    • Atlantic cod genomics and broodstock development, http://www.codgene.ca (accessed May 2010)
    • (2010)
  • 6
    • 77951241851 scopus 로고    scopus 로고
    • Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)
    • Hubert, S.; Higgins, B.; Borza, T.; Bowman, S. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua) BMC Genomics 2010, 11, 191
    • (2010) BMC Genomics , vol.11 , pp. 191
    • Hubert, S.1    Higgins, B.2    Borza, T.3    Bowman, S.4
  • 7
    • 33748619762 scopus 로고    scopus 로고
    • Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): Implications for inferring population structure in nonmodel organisms
    • Nielsen, E. E.; Hansen, M. M.; Meldrup, D. Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): implications for inferring population structure in nonmodel organisms Mol. Ecol. 2006, 15, 3219-3229
    • (2006) Mol. Ecol. , vol.15 , pp. 3219-3229
    • Nielsen, E.E.1    Hansen, M.M.2    Meldrup, D.3
  • 8
    • 41849144117 scopus 로고    scopus 로고
    • Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection
    • Moen, T.; Hayes, B.; Nilsen, F.; Delghandi, M.; Fjalestad, K. T.; Fevolden, S. E.; Berg, P. R.; Lien, S. Identification and characterisation of novel SNP markers in Atlantic cod: evidence for directional selection BMC Genet. 2008, 9, 18
    • (2008) BMC Genet. , vol.9 , pp. 18
    • Moen, T.1    Hayes, B.2    Nilsen, F.3    Delghandi, M.4    Fjalestad, K.T.5    Fevolden, S.E.6    Berg, P.R.7    Lien, S.8
  • 11
    • 70350001944 scopus 로고    scopus 로고
    • Towards functional genomics in fish using quantitative proteomics
    • Martyniuk, C. J.; Denslow, N. D. Towards functional genomics in fish using quantitative proteomics Gen. Comp. Endrocrinol. 2009, 164, 135-141
    • (2009) Gen. Comp. Endrocrinol. , vol.164 , pp. 135-141
    • Martyniuk, C.J.1    Denslow, N.D.2
  • 12
    • 0034659815 scopus 로고    scopus 로고
    • Proteomics to study genes and genomes
    • Pandey, A.; Mann, M. Proteomics to study genes and genomes Nature 2000, 405, 837 46
    • (2000) Nature , vol.405 , pp. 837-846
    • Pandey, A.1    Mann, M.2
  • 13
    • 1242339585 scopus 로고    scopus 로고
    • Application of proteome analysis to seafood authentication
    • Martinez, I.; Jakobsen Friis, T. Application of proteome analysis to seafood authentication Proteomics 2004, 4, 347-354
    • (2004) Proteomics , vol.4 , pp. 347-354
    • Martinez, I.1    Jakobsen Friis, T.2
  • 14
    • 27744436608 scopus 로고    scopus 로고
    • A proteomics approach to identifying fish cell lines
    • Wagg, S. K.; Lee, L. E. A proteomics approach to identifying fish cell lines Proteomics 2005, 5, 4236-4244
    • (2005) Proteomics , vol.5 , pp. 4236-4244
    • Wagg, S.K.1    Lee, L.E.2
  • 15
    • 1842733097 scopus 로고    scopus 로고
    • Preliminary study on puffer fish proteome-species identification of puffer fish by two-dimensional electrophoresis
    • Chen, T. Y.; Shiau, C. Y.; Wei, C. I.; Hwang, D. F. Preliminary study on puffer fish proteome-species identification of puffer fish by two-dimensional electrophoresis J. Agric. Food Chem. 2004, 52, 2236-2241
    • (2004) J. Agric. Food Chem. , vol.52 , pp. 2236-2241
    • Chen, T.Y.1    Shiau, C.Y.2    Wei, C.I.3    Hwang, D.F.4
  • 16
    • 16644401652 scopus 로고    scopus 로고
    • Isoelectric focusing identification of four freshwater fish commercially labeled "perch"
    • Berrini, A.; Tepedino, V.; Borromeo, V.; Secchi, C. Isoelectric focusing identification of four freshwater fish commercially labeled "perch" J. AOAC Int. 2005, 88, 670-672
    • (2005) J. AOAC Int. , vol.88 , pp. 670-672
    • Berrini, A.1    Tepedino, V.2    Borromeo, V.3    Secchi, C.4
  • 17
    • 33947301122 scopus 로고    scopus 로고
    • High resolution two-dimensional electrophoresis as a tool to differentiate wild from farmed cod (Gadus morhua) and to assess the protein composition of klipfish
    • Martiniez, I.; Slizyte, R.; Dauksas, E. High resolution two-dimensional electrophoresis as a tool to differentiate wild from farmed cod (Gadus morhua) and to assess the protein composition of klipfish J. Food Chem. 2007, 102, 504-510
    • (2007) J. Food Chem. , vol.102 , pp. 504-510
    • Martiniez, I.1    Slizyte, R.2    Dauksas, E.3
  • 18
    • 13044305982 scopus 로고    scopus 로고
    • A standardized method of identification of raw and heat-processed fish by urea isoelectric focusing: A collaborative study
    • DOI 10.1002/( SICI)1522-26 83(19990701 )20:10<1 923::AID-ELPS1 923>3.0.CO;2-J
    • Etienne, M.; Jerome, M.; Fleurence, J.; Rehbein, H.; Kundiger, R.; Yman, I. M.; Ferm, M.; Craig, A.; Mackie, I.; Jessen, F.; Smelt, A.; Luten, J. A standardized method of identification of raw and heat-processed fish by urea isoelectric focusing: a collaborative study Electrophoresis 1999, 20, 1923-1933 (Pubitemid 29376794)
    • (1999) Electrophoresis , vol.20 , Issue.10 , pp. 1923-1933
    • Etienne, M.1    Jerome, M.2    Fleurence, J.3    Rehbein, H.4    Kundiger, R.5    Yman, I.M.6    Ferm, M.7    Craig, A.8    Mackie, I.9    Jessen, F.10    Smelt, A.11    Luten, J.12
  • 19
    • 0035014131 scopus 로고    scopus 로고
    • Protein changes in post mortem sea bass (Dicentrarchus labrax) muscle monitored by one-and two-dimensional gel electrophoresis
    • Verrez-Bagnis, V.; Ladrat, C.; Morzel, M.; Noel, J.; Fleurence, J. Protein changes in post mortem sea bass (Dicentrarchus labrax) muscle monitored by one-and two-dimensional gel electrophoresis Electrophoresis 2001, 22, 1539-1544
    • (2001) Electrophoresis , vol.22 , pp. 1539-1544
    • Verrez-Bagnis, V.1    Ladrat, C.2    Morzel, M.3    Noel, J.4    Fleurence, J.5
  • 20
    • 0038353381 scopus 로고    scopus 로고
    • Proteome analysis elucidating post-mortem changes in cod (Gadus morhua) muscle proteins
    • Kjaersgard, I. V.; Jessen, F. Proteome analysis elucidating post-mortem changes in cod (Gadus morhua) muscle proteins J. Agric. Food Chem. 2003, 51, 3985-3991
    • (2003) J. Agric. Food Chem. , vol.51 , pp. 3985-3991
    • Kjaersgard, I.V.1    Jessen, F.2
  • 21
    • 33645082204 scopus 로고    scopus 로고
    • Changes in cod muscle proteins during frozen storage revealed by proteome analysis and multivariate data analysis
    • Kjaersgard, I. V.; Norrelykke, M. R.; Jessen, F. Changes in cod muscle proteins during frozen storage revealed by proteome analysis and multivariate data analysis Proteomics 2006, 6, 1606-1618
    • (2006) Proteomics , vol.6 , pp. 1606-1618
    • Kjaersgard, I.V.1    Norrelykke, M.R.2    Jessen, F.3
  • 24
    • 33750728385 scopus 로고    scopus 로고
    • Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications
    • Qian, W. J.; Jacobs, J. M.; Liu, T.; Camp, D. G., 2nd; Smith, R. D. Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications Mol. Cell. Proteomics 2006, 5, 1727-1744
    • (2006) Mol. Cell. Proteomics , vol.5 , pp. 1727-1744
    • Qian, W.J.1    Jacobs, J.M.2    Liu, T.3    Camp II, D.G.4    Smith, R.D.5
  • 25
    • 4444335470 scopus 로고    scopus 로고
    • The ABC's (and XYZ's) of peptide sequencing
    • Steen, H.; Mann, M. The ABC's (and XYZ's) of peptide sequencing Nat. Rev. Mol. Cell. Biol. 2004, 5, 699-711
    • (2004) Nat. Rev. Mol. Cell. Biol. , vol.5 , pp. 699-711
    • Steen, H.1    Mann, M.2
  • 26
    • 33750600611 scopus 로고    scopus 로고
    • Proteome informatics I: Bioinformatics tools for processing experimental data
    • Palagi, P. M.; Hernandez, P.; Walther, D.; Appel, R. D. Proteome informatics I: bioinformatics tools for processing experimental data Proteomics 2006, 6, 5435-5444
    • (2006) Proteomics , vol.6 , pp. 5435-5444
    • Palagi, P.M.1    Hernandez, P.2    Walther, D.3    Appel, R.D.4
  • 27
    • 78649679815 scopus 로고    scopus 로고
    • Ensembl, (acessed May).
    • Ensembl, http://www.ensembl.org/index.html (acessed May 2010).
    • (2010)
  • 28
    • 78649648197 scopus 로고    scopus 로고
    • National Center for Biotechnology Information, (accessed May).
    • National Center for Biotechnology Information, http://www.ncbi.nlm.nih. gov (accessed May 2010).
    • (2010)
  • 31
    • 17544397465 scopus 로고    scopus 로고
    • Ryanodine receptor isoforms of non-mammalian skeletal muscle
    • Ogawa, Y.; Murayama, T.; Kurebayashi, N. Ryanodine receptor isoforms of non-mammalian skeletal muscle Front. Biosci. 2002, 7, 1184-1194
    • (2002) Front. Biosci. , vol.7 , pp. 1184-1194
    • Ogawa, Y.1    Murayama, T.2    Kurebayashi, N.3
  • 33
    • 56149116038 scopus 로고    scopus 로고
    • Contribution of cathepsins B, L and D to muscle protein profiles correlated with texture in rainbow trout (Oncorhynchus mykiss)
    • Godiksen, H.; Morzel, M.; Hylding, G.; Jessen, F. Contribution of cathepsins B, L and D to muscle protein profiles correlated with texture in rainbow trout (Oncorhynchus mykiss) Food Chem. 2009, 113, 889-896
    • (2009) Food Chem. , vol.113 , pp. 889-896
    • Godiksen, H.1    Morzel, M.2    Hylding, G.3    Jessen, F.4
  • 35
    • 85009635393 scopus 로고
    • Comparison of calpain of various fish myosins in relation to their thermal stabilities
    • Muramoto, M.; Yamamoto, Y.; Seki, N. Comparison of calpain of various fish myosins in relation to their thermal stabilities Bull. J. Soc. Sci. Fish. 1989, 55, 917-923
    • (1989) Bull. J. Soc. Sci. Fish. , vol.55 , pp. 917-923
    • Muramoto, M.1    Yamamoto, Y.2    Seki, N.3


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