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Volumn 164, Issue 2-3, 2009, Pages 135-141

Towards functional genomics in fish using quantitative proteomics

Author keywords

17 trenbolone; Fathead minnows; Genomics; Quantitative proteomics

Indexed keywords

ANDROGEN; ESTROGEN DERIVATIVE; MESSENGER RNA; PEPTIDE DERIVATIVE; PROTEOME; SEX HORMONE; STEROID RECEPTOR; TRANSCRIPTOME; TRENBOLONE;

EID: 70350001944     PISSN: 00166480     EISSN: 10956840     Source Type: Journal    
DOI: 10.1016/j.ygcen.2009.01.023     Document Type: Short Survey
Times cited : (48)

References (42)
  • 1
    • 34447565175 scopus 로고    scopus 로고
    • Proteomic analyses indicate induction of hepatic carbonyl reductase/20beta-hydroxysteroid dehydrogenase B in rainbow trout exposed to sewage effluent
    • Albertsson E., Kling P., Gunnarsson L., Larsson D.G., and Förlin L. Proteomic analyses indicate induction of hepatic carbonyl reductase/20beta-hydroxysteroid dehydrogenase B in rainbow trout exposed to sewage effluent. Ecotoxicol. Environ. Saf. 68 (2007) 33-39
    • (2007) Ecotoxicol. Environ. Saf. , vol.68 , pp. 33-39
    • Albertsson, E.1    Kling, P.2    Gunnarsson, L.3    Larsson, D.G.4    Förlin, L.5
  • 3
    • 36949003025 scopus 로고    scopus 로고
    • Identification of a transcriptional fingerprint of estrogen exposure in rainbow trout liver
    • Benninghoff A.D., and Williams D.E. Identification of a transcriptional fingerprint of estrogen exposure in rainbow trout liver. Toxicol. Sci. 101 (2008) 65-80
    • (2008) Toxicol. Sci. , vol.101 , pp. 65-80
    • Benninghoff, A.D.1    Williams, D.E.2
  • 4
    • 17444392125 scopus 로고    scopus 로고
    • Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmoninarum (BKD)
    • Booy A.T., Haddow J.D., Ohlund L.B., Hardie D.B., and Olafson R.W. Application of isotope coded affinity tag (ICAT) analysis for the identification of differentially expressed proteins following infection of atlantic salmon (Salmo salar) with infectious hematopoietic necrosis virus (IHNV) or Renibacterium salmoninarum (BKD). J. Proteome Res. 4 (2005) 325-334
    • (2005) J. Proteome Res. , vol.4 , pp. 325-334
    • Booy, A.T.1    Haddow, J.D.2    Ohlund, L.B.3    Hardie, D.B.4    Olafson, R.W.5
  • 5
    • 21644483165 scopus 로고    scopus 로고
    • A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells
    • Choe L.H., Aggarwal K., Franck Z., and Lee K.H. A comparison of the consistency of proteome quantitation using two-dimensional electrophoresis and shotgun isobaric tagging in Escherichia coli cells. Electrophoresis 26 (2005) 2437-2449
    • (2005) Electrophoresis , vol.26 , pp. 2437-2449
    • Choe, L.H.1    Aggarwal, K.2    Franck, Z.3    Lee, K.H.4
  • 6
    • 34848822499 scopus 로고    scopus 로고
    • Quantitative profile of five murine core proteomes using label-free functional proteomics
    • Cutillas P.R., and Vanhaesebroeck B. Quantitative profile of five murine core proteomes using label-free functional proteomics. Mol. Cell. Proteomics 6 (2007) 1560-1573
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 1560-1573
    • Cutillas, P.R.1    Vanhaesebroeck, B.2
  • 8
    • 17444383113 scopus 로고    scopus 로고
    • Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry
    • DeSouza L., Diehl G., Rodrigues M.J., Guo J., Romaschin A.D., Colgan T.J., and Siu K.W. Search for cancer markers from endometrial tissues using differentially labeled tags iTRAQ and cICAT with multidimensional liquid chromatography and tandem mass spectrometry. J. Proteome Res. 4 (2005) 377-386
    • (2005) J. Proteome Res. , vol.4 , pp. 377-386
    • DeSouza, L.1    Diehl, G.2    Rodrigues, M.J.3    Guo, J.4    Romaschin, A.D.5    Colgan, T.J.6    Siu, K.W.7
  • 9
    • 35348815049 scopus 로고    scopus 로고
    • Analysis of the Rana catesbeiana tadpole tail fin proteome and phosphoproteome during T3-induced apoptosis: identification of a novel type I keratin
    • Domanski D., and Helbing C.C. Analysis of the Rana catesbeiana tadpole tail fin proteome and phosphoproteome during T3-induced apoptosis: identification of a novel type I keratin. BMC Dev. Biol. 7 (2007) 94
    • (2007) BMC Dev. Biol. , vol.7 , pp. 94
    • Domanski, D.1    Helbing, C.C.2
  • 10
    • 33847630405 scopus 로고    scopus 로고
    • Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
    • Elias J.E., and Gygi S.P. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4 (2007) 207-214
    • (2007) Nat. Methods , vol.4 , pp. 207-214
    • Elias, J.E.1    Gygi, S.P.2
  • 11
    • 4043141477 scopus 로고    scopus 로고
    • Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research
    • Everley P.A., Krijgsveld J., Zetter B.R., and Gygi S.P. Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research. Mol. Cell. Proteomics 3 (2004) 729-735
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 729-735
    • Everley, P.A.1    Krijgsveld, J.2    Zetter, B.R.3    Gygi, S.P.4
  • 12
    • 44949100202 scopus 로고    scopus 로고
    • Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacepede), using pyrosequencing technology
    • Garcia-Reyero N., Griffitt R.J., Liu L., Kroll K.J., Farmerie W.G., Barber D.S., and Denslow N.D. Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacepede), using pyrosequencing technology. J. Fish Biol. 72 (2008) 2354-2376
    • (2008) J. Fish Biol. , vol.72 , pp. 2354-2376
    • Garcia-Reyero, N.1    Griffitt, R.J.2    Liu, L.3    Kroll, K.J.4    Farmerie, W.G.5    Barber, D.S.6    Denslow, N.D.7
  • 14
    • 0037795741 scopus 로고    scopus 로고
    • Absolute quantitation of proteins and phosphoproteins from cell lysates by tandem MS
    • Gerber S.A., Rush J., Stemman O., Kirschner M.W., and Gygi S.P. Absolute quantitation of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 100 (2003) 6940-6945
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6940-6945
    • Gerber, S.A.1    Rush, J.2    Stemman, O.3    Kirschner, M.W.4    Gygi, S.P.5
  • 17
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., and Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17 (1999) 994-999
    • (1999) Nat. Biotechnol. , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 18
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi S.P., Rochon Y., Franza B.R., and Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19 (1999) 1720-1730
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 19
    • 13844311068 scopus 로고    scopus 로고
    • Integrated transcriptome and proteome data: the challenges ahead
    • Hack C.J. Integrated transcriptome and proteome data: the challenges ahead. Brief Funct. Genomic Proteomic 3 (2004) 212-219
    • (2004) Brief Funct. Genomic Proteomic , vol.3 , pp. 212-219
    • Hack, C.J.1
  • 21
  • 24
    • 39149141328 scopus 로고    scopus 로고
    • Auto-regulation of estrogen receptor subtypes and gene expression profiling of 17beta-estradiol action in the neuroendocrine axis of male goldfish
    • Marlatt V.L., Martyniuk C.J., Zhang D., Xiong H., Watt J., Xia X., Moon T., and Trudeau V.L. Auto-regulation of estrogen receptor subtypes and gene expression profiling of 17beta-estradiol action in the neuroendocrine axis of male goldfish. Mol. Cell. Endocrinol. 283 (2008) 38-48
    • (2008) Mol. Cell. Endocrinol. , vol.283 , pp. 38-48
    • Marlatt, V.L.1    Martyniuk, C.J.2    Zhang, D.3    Xiong, H.4    Watt, J.5    Xia, X.6    Moon, T.7    Trudeau, V.L.8
  • 25
    • 33846791058 scopus 로고    scopus 로고
    • Gene expression profiling in the neuroendocrine brain of male goldfish (Carassius auratus) exposed to 17alpha-ethinylestradiol
    • Martyniuk C.J., Xiong H., Crump K., Chiu S., Sardana R., Nadler A., Gerrie E.R., Xia X., and Trudeau V.L. Gene expression profiling in the neuroendocrine brain of male goldfish (Carassius auratus) exposed to 17alpha-ethinylestradiol. Physiol. Genomics 27 (2006) 328-336
    • (2006) Physiol. Genomics , vol.27 , pp. 328-336
    • Martyniuk, C.J.1    Xiong, H.2    Crump, K.3    Chiu, S.4    Sardana, R.5    Nadler, A.6    Gerrie, E.R.7    Xia, X.8    Trudeau, V.L.9
  • 26
    • 34547104388 scopus 로고    scopus 로고
    • Microarray analysis in the zebrafish (Danio rerio) liver and telencephalon after exposure to low concentration of 17alpha-ethinylestradiol
    • Martyniuk C.J., Gerrie E.R., Popesku J.T., Ekker M., and Trudeau V.L. Microarray analysis in the zebrafish (Danio rerio) liver and telencephalon after exposure to low concentration of 17alpha-ethinylestradiol. Aquat. Toxicol. 84 (2007) 38-49
    • (2007) Aquat. Toxicol. , vol.84 , pp. 38-49
    • Martyniuk, C.J.1    Gerrie, E.R.2    Popesku, J.T.3    Ekker, M.4    Trudeau, V.L.5
  • 28
    • 35548938195 scopus 로고    scopus 로고
    • Gene expression analysis of estrogenic compounds in the liver of common carp (Cyprinus carpio) using a custom cDNA microarray
    • Moens L.N., van der Ven K., Van Remortel P., Del-Favero J., and De Coen W.M. Gene expression analysis of estrogenic compounds in the liver of common carp (Cyprinus carpio) using a custom cDNA microarray. J. Biochem. Mol. Toxicol. 21 (2007) 299-311
    • (2007) J. Biochem. Mol. Toxicol. , vol.21 , pp. 299-311
    • Moens, L.N.1    van der Ven, K.2    Van Remortel, P.3    Del-Favero, J.4    De Coen, W.M.5
  • 29
    • 0242559054 scopus 로고    scopus 로고
    • Pathway studio - the analysis and navigation of molecular networks
    • Nikitin A., Egorov S., Daraselia N., and Mazo I. Pathway studio - the analysis and navigation of molecular networks. Bioinformatics 19 (2003) 2155-2157
    • (2003) Bioinformatics , vol.19 , pp. 2155-2157
    • Nikitin, A.1    Egorov, S.2    Daraselia, N.3    Mazo, I.4
  • 30
    • 33846838600 scopus 로고    scopus 로고
    • Detection of hypoxia-related proteins in medaka (Oryzias latipes) brain tissue by difference gel electrophoresis and de novo sequencing of 4-sulfophenyl isothiocyanate-derivatized peptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
    • Oehlers L.P., Perez A.N., and Walter R.B. Detection of hypoxia-related proteins in medaka (Oryzias latipes) brain tissue by difference gel electrophoresis and de novo sequencing of 4-sulfophenyl isothiocyanate-derivatized peptides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 145 (2007) 120-133
    • (2007) Comp. Biochem. Physiol. C Toxicol. Pharmacol. , vol.145 , pp. 120-133
    • Oehlers, L.P.1    Perez, A.N.2    Walter, R.B.3
  • 31
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong S.E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., and Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1 (2002) 376-386
    • (2002) Mol. Cell. Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6    Mann, M.7
  • 32
    • 39749147630 scopus 로고    scopus 로고
    • Proteolysis of multiple myelin basic protein isoforms after neurotrauma: characterization by mass spectrometry
    • Ottens A.K., Golden E.C., Bustamante L., Hayes R.L., Denslow N.D., and Wang K.K. Proteolysis of multiple myelin basic protein isoforms after neurotrauma: characterization by mass spectrometry. J. Neurochem. 104 (2007) 1404-1414
    • (2007) J. Neurochem. , vol.104 , pp. 1404-1414
    • Ottens, A.K.1    Golden, E.C.2    Bustamante, L.3    Hayes, R.L.4    Denslow, N.D.5    Wang, K.K.6
  • 34
    • 34248679017 scopus 로고    scopus 로고
    • Gonadal transcriptome responses and physiological consequences of exposure to oestrogen in breeding zebrafish (Danio rerio)
    • Santos E.M., Paull G.C., Van Look K.J., Workman V.L., Holt W.V., van Aerle R., Kille P., and Tyler C.R. Gonadal transcriptome responses and physiological consequences of exposure to oestrogen in breeding zebrafish (Danio rerio). Aquat. Toxicol. 83 (2007) 134-142
    • (2007) Aquat. Toxicol. , vol.83 , pp. 134-142
    • Santos, E.M.1    Paull, G.C.2    Van Look, K.J.3    Workman, V.L.4    Holt, W.V.5    van Aerle, R.6    Kille, P.7    Tyler, C.R.8
  • 35
    • 2542574741 scopus 로고    scopus 로고
    • Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology
    • Schmidt F., Donahoe S., Hagens K., Mattow J., Schaible U.E., Kaufmann S.H., Aebersold R., and Jungblut P.R. Complementary analysis of the Mycobacterium tuberculosis proteome by two-dimensional electrophoresis and isotope-coded affinity tag technology. Mol. Cell. Proteomics 3 (2004) 24-42
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 24-42
    • Schmidt, F.1    Donahoe, S.2    Hagens, K.3    Mattow, J.4    Schaible, U.E.5    Kaufmann, S.H.6    Aebersold, R.7    Jungblut, P.R.8
  • 36
    • 0345305233 scopus 로고    scopus 로고
    • Proteomics in zebrafish exposed to endocrine disrupting chemicals
    • Shrader E.A., Henry T.R., Greeley Jr. M.S., and Bradley B.P. Proteomics in zebrafish exposed to endocrine disrupting chemicals. Ecotoxicology 12 (2003) 485-488
    • (2003) Ecotoxicology , vol.12 , pp. 485-488
    • Shrader, E.A.1    Henry, T.R.2    Greeley Jr., M.S.3    Bradley, B.P.4
  • 37
    • 15344341157 scopus 로고    scopus 로고
    • Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS
    • Steen H., Jebanathirajah J.A., Springer M., and Kirschner M.W. Stable isotope-free relative and absolute quantitation of protein phosphorylation stoichiometry by MS. Proc. Natl. Acad. Sci. USA 102 (2005) 3948-3953
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 3948-3953
    • Steen, H.1    Jebanathirajah, J.A.2    Springer, M.3    Kirschner, M.W.4
  • 38
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: a single gel method for detecting changes in protein extracts
    • Unlü M., Morgan M.E., and Minden J.S. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18 (1997) 2071-2077
    • (1997) Electrophoresis , vol.18 , pp. 2071-2077
    • Unlü, M.1    Morgan, M.E.2    Minden, J.S.3
  • 39
    • 33846620538 scopus 로고    scopus 로고
    • Proteome profile of cytosolic component of zebrafish liver generated by LC-ESI MS/MS combined with trypsin digestion and microwave-assisted acid hydrolysis
    • Wang N., Mackenzie L., De Souza A.G., Zhong H., Goss G., and Li L. Proteome profile of cytosolic component of zebrafish liver generated by LC-ESI MS/MS combined with trypsin digestion and microwave-assisted acid hydrolysis. J. Proteome Res. 6 (2007) 263-272
    • (2007) J. Proteome Res. , vol.6 , pp. 263-272
    • Wang, N.1    Mackenzie, L.2    De Souza, A.G.3    Zhong, H.4    Goss, G.5    Li, L.6
  • 40
    • 33645533089 scopus 로고    scopus 로고
    • Absolute quantitation of cancer-related proteins using an MS-based peptide chip
    • Warren, E.N., Jiang, J., Parker, C.E., Borchers, C.H., 2005. Absolute quantitation of cancer-related proteins using an MS-based peptide chip. Biotechniques (Suppl. 7-11).
    • (2005) Biotechniques , Issue.SUPPL. 7-11
    • Warren, E.N.1    Jiang, J.2    Parker, C.E.3    Borchers, C.H.4
  • 41
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn M.P., Wolters D., and Yates III J.R. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 3 (2001) 242-247
    • (2001) Nat. Biotechnol. , vol.3 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 42
    • 0028969264 scopus 로고
    • Cartography of neurexins: more than 1000 isoforms generated by alternative splicing and expressed in distinct subsets of neurons
    • Ullrich B., Ushkaryov Y.A., and Sudhof T.C. Cartography of neurexins: more than 1000 isoforms generated by alternative splicing and expressed in distinct subsets of neurons. Neuron 14 (1995) 497-507
    • (1995) Neuron , vol.14 , pp. 497-507
    • Ullrich, B.1    Ushkaryov, Y.A.2    Sudhof, T.C.3


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