메뉴 건너뛰기




Volumn 5, Issue 11, 2010, Pages

Nearest template prediction: A single-sample-based flexible class prediction with confidence assessment

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ANALYTICAL PARAMETERS; ARTICLE; CLINICAL DECISION MAKING; DEVICE; DISEASE CLASSIFICATION; GENE EXPRESSION; HUMAN; MEASUREMENT; MICROARRAY ANALYSIS; NEAREST TEMPLATE PREDICTION; NONHUMAN; OUTCOME ASSESSMENT; PREDICTION; RELIABILITY; STATISTICAL ANALYSIS; ACUTE DISEASE; ACUTE LYMPHOBLASTIC LEUKEMIA; ALGORITHM; ANIMAL; BIOLOGY; BREAST TUMOR; CLUSTER ANALYSIS; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; LIVER CIRRHOSIS; METHODOLOGY; MYELOID LEUKEMIA; RAT; REPRODUCIBILITY;

EID: 78649508797     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0015543     Document Type: Article
Times cited : (239)

References (26)
  • 1
    • 41649114164 scopus 로고    scopus 로고
    • Enabling personalized cancer medicine through analysis of gene-expression patterns
    • van't Veer LJ, Bernards R (2008) Enabling personalized cancer medicine through analysis of gene-expression patterns. Nature 452: 564-570.
    • (2008) Nature , vol.452 , pp. 564-570
    • Van't, V.L.J.1    Bernards, R.2
  • 2
    • 57349090407 scopus 로고    scopus 로고
    • Gene expression in fixed tissues and outcome in hepatocellular carcinoma
    • Hoshida Y, Villanueva A, Kobayashi M, Peix J, Chiang DY, et al. (2008) Gene expression in fixed tissues and outcome in hepatocellular carcinoma. N Engl J Med 359: 1995-2004.
    • (2008) N Engl J Med , vol.359 , pp. 1995-2004
    • Hoshida, Y.1    Villanueva, A.2    Kobayashi, M.3    Peix, J.4    Chiang, D.Y.5
  • 3
    • 33846978784 scopus 로고    scopus 로고
    • Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting
    • Dupuy A, Simon RM (2007) Critical review of published microarray studies for cancer outcome and guidelines on statistical analysis and reporting. J Natl Cancer Inst 99: 147-157.
    • (2007) J Natl Cancer Inst , vol.99 , pp. 147-157
    • Dupuy, A.1    Simon, R.M.2
  • 4
    • 33748041130 scopus 로고    scopus 로고
    • Statistical analysis of DNA microarray data in cancer research
    • Fan J, Ren Y (2006) Statistical analysis of DNA microarray data in cancer research. Clin Cancer Res 12: 4469-4473.
    • (2006) Clin Cancer Res , vol.12 , pp. 4469-4473
    • Fan, J.1    Ren, Y.2
  • 5
    • 13444249852 scopus 로고    scopus 로고
    • Prediction of cancer outcome with microarrays: A multiple random validation strategy
    • Michiels S, Koscielny S, Hill C (2005) Prediction of cancer outcome with microarrays: a multiple random validation strategy. Lancet 365: 488-492.
    • (2005) Lancet , vol.365 , pp. 488-492
    • Michiels, S.1    Koscielny, S.2    Hill, C.3
  • 6
    • 0242361278 scopus 로고    scopus 로고
    • Predictive ability of DNA microarrays for cancer outcomes and correlates: An empirical assessment
    • Ntzani EE, Ioannidis JP (2003) Predictive ability of DNA microarrays for cancer outcomes and correlates: an empirical assessment. Lancet 362: 1439-1444.
    • (2003) Lancet , vol.362 , pp. 1439-1444
    • Ntzani, E.E.1    Ioannidis, J.P.2
  • 7
    • 19344375744 scopus 로고    scopus 로고
    • Semi-supervised methods to predict patient survival from gene expression data
    • Bair E, Tibshirani R (2004) Semi-supervised methods to predict patient survival from gene expression data. PLoS Biol 2: E108.
    • (2004) PLoS Biol , vol.2
    • Bair, E.1    Tibshirani, R.2
  • 8
    • 51049111671 scopus 로고    scopus 로고
    • Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastases
    • Xu L, Shen SS, Hoshida Y, Subramanian A, Ross K, et al. (2008) Gene expression changes in an animal melanoma model correlate with aggressiveness of human melanoma metastases. Mol Cancer Res 6: 760-769.
    • (2008) Mol Cancer Res , vol.6 , pp. 760-769
    • Xu, L.1    Shen, S.S.2    Hoshida, Y.3    Subramanian, A.4    Ross, K.5
  • 9
    • 70349739285 scopus 로고    scopus 로고
    • Integrative transcriptome analysis reveals common molecular subclasses of human hepatocellular carcinoma
    • Hoshida Y, Nijman SM, Kobayashi M, Chan JA, Brunet JP, et al. (2009) Integrative transcriptome analysis reveals common molecular subclasses of human hepatocellular carcinoma. Cancer Res 69: 7385-7392.
    • (2009) Cancer Res , vol.69 , pp. 7385-7392
    • Hoshida, Y.1    Nijman, S.M.2    Kobayashi, M.3    Chan, J.A.4    Brunet, J.P.5
  • 10
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531-537.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5
  • 11
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • Van't, V.L.J.1    Dai, H.2    van de Vijver, M.J.3    He, Y.D.4    Hart, A.A.5
  • 12
    • 0035949684 scopus 로고    scopus 로고
    • Predicting the clinical status of human breast cancer by using gene expression profiles
    • West M, Blanchette C, Dressman H, Huang E, Ishida S, et al. (2001) Predicting the clinical status of human breast cancer by using gene expression profiles. Proc Natl Acad Sci U S A 98: 11462-11467.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 11462-11467
    • West, M.1    Blanchette, C.2    Dressman, H.3    Huang, E.4    Ishida, S.5
  • 13
    • 34247549347 scopus 로고    scopus 로고
    • Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma
    • Wurmbach E, Chen YB, Khitrov G, Zhang W, Roayaie S, et al. (2007) Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma. Hepatology 45: 938-947.
    • (2007) Hepatology , vol.45 , pp. 938-947
    • Wurmbach, E.1    Chen, Y.B.2    Khitrov, G.3    Zhang, W.4    Roayaie, S.5
  • 15
    • 43149108659 scopus 로고    scopus 로고
    • Subclass mapping: Identifying common subtypes in independent disease data sets
    • Hoshida Y, Brunet JP, Tamayo P, Golub TR, Mesirov JP (2007) Subclass mapping: identifying common subtypes in independent disease data sets. PLoS ONE 2: e1195.
    • (2007) PLoS ONE , vol.2
    • Hoshida, Y.1    Brunet, J.P.2    Tamayo, P.3    Golub, T.R.4    Mesirov, J.P.5
  • 16
    • 0037137519 scopus 로고    scopus 로고
    • A geneexpression signature as a predictor of survival in breast cancer
    • van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, et al. (2002) A geneexpression signature as a predictor of survival in breast cancer. N Engl J Med 347: 1999-2009.
    • (2002) N Engl J Med , vol.347 , pp. 1999-2009
    • van de Vijver, M.J.1    He, Y.D.2    Van't, V.L.J.3    Dai, H.4    Hart, A.A.5
  • 17
    • 77950308839 scopus 로고    scopus 로고
    • Breast cancer molecular profiling with single sample predictors: A retrospective analysis
    • Weigelt B, Mackay A, A'Hern R, Natrajan R, Tan DS, et al. (2010) Breast cancer molecular profiling with single sample predictors: a retrospective analysis. Lancet Oncol 11: 339-349.
    • (2010) Lancet Oncol , vol.11 , pp. 339-349
    • Weigelt, B.1    Mackay, A.2    A'Hern, R.3    Natrajan, R.4    Tan, D.S.5
  • 18
    • 34250652449 scopus 로고    scopus 로고
    • Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series
    • Desmedt C, Piette F, Loi S, Wang Y, Lallemand F, et al. (2007) Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series. Clin Cancer Res 13: 3207-3214.
    • (2007) Clin Cancer Res , vol.13 , pp. 3207-3214
    • Desmedt, C.1    Piette, F.2    Loi, S.3    Wang, Y.4    Lallemand, F.5
  • 19
    • 13844310310 scopus 로고    scopus 로고
    • Geneexpression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
    • Wang Y, Klijn JG, Zhang Y, Sieuwerts AM, Look MP, et al. (2005) Geneexpression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 365: 671-679.
    • (2005) Lancet , vol.365 , pp. 671-679
    • Wang, Y.1    Klijn, J.G.2    Zhang, Y.3    Sieuwerts, A.M.4    Look, M.P.5
  • 20
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5
  • 21
    • 33749335282 scopus 로고    scopus 로고
    • The Connectivity Map: Using gene-expression signatures to connect small molecules, genes, and disease
    • Lamb J, Crawford ED, Peck D, Modell JW, Blat IC, et al. (2006) The Connectivity Map: using gene-expression signatures to connect small molecules, genes, and disease. Science 313: 1929-1935.
    • (2006) Science , vol.313 , pp. 1929-1935
    • Lamb, J.1    Crawford, E.D.2    Peck, D.3    Modell, J.W.4    Blat, I.C.5
  • 22
    • 1442335997 scopus 로고    scopus 로고
    • Gene expression-based high-throughput screening(GE-HTS) and application to leukemia differentiation
    • Stegmaier K, Ross KN, Colavito SA, O'Malley S, Stockwell BR, et al. (2004) Gene expression-based high-throughput screening(GE-HTS) and application to leukemia differentiation. Nat Genet 36: 257-263.
    • (2004) Nat Genet , vol.36 , pp. 257-263
    • Stegmaier, K.1    Ross, K.N.2    Colavito, S.A.3    O'Malley, S.4    Stockwell, B.R.5
  • 23
    • 16644362104 scopus 로고    scopus 로고
    • Bayesian analysis of binary prediction tree models for retrospectively sampled outcomes
    • Pittman J, Huang E, Nevins J, Wang Q, West M (2004) Bayesian analysis of binary prediction tree models for retrospectively sampled outcomes. Biostatistics 5: 587-601.
    • (2004) Biostatistics , vol.5 , pp. 587-601
    • Pittman, J.1    Huang, E.2    Nevins, J.3    Wang, Q.4    West, M.5
  • 25
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y, Hochberg Y (1995) Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Series B Stat Methodol 57: 289-300.
    • (1995) J R Stat Soc Series B Stat Methodol , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.