Comparison of MHC class I risk haplotypes in Thai and Caucasian psoriatics shows locus heterogeneity at PSORS1

Tissue Antigens

Volumn 76, Issue 5, 2010, Pages 387-397

  Stuart, P E ^a   Nair, R P ^a   Hiremagalore, R ^a   Kullavanijaya, P ^b   Tejasvi, T ^a   Lim, H W ^c   Voorhees, J J ^a   Elder, J T ^a,d  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b Institute of Dermatology Thailand   (Thailand)

^c HENRY FORD HOSPITAL   (United States)

^d VA ANN ARBOR HEALTHCARE SYSTEM   (United States)

Author keywords

Human genetics; Human leukocyte antigens; Major histocompatibility complex; Psoriasis

Indexed keywords

GENOMIC DNA; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1;

ALLELE; ARTICLE; CASE CONTROL STUDY; CAUCASIAN; COMPARATIVE STUDY; CONTROLLED STUDY; GENE LOCUS; GENETIC ASSOCIATION; GENETIC HETEROGENEITY; GENETIC RISK; HAPLOTYPE; HOMOZYGOTE; HUMAN; MAJOR CLINICAL STUDY; MAJOR HISTOCOMPATIBILITY COMPLEX; NUCLEOTIDE SEQUENCE; ONSET AGE; PHENOTYPE; PRIORITY JOURNAL; PSORIASIS; RACE DIFFERENCE; THAILAND;

ASIAN CONTINENTAL ANCESTRY GROUP; CASE-CONTROL STUDIES; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENES, MHC CLASS I; HAPLOTYPES; HLA-B ANTIGENS; HLA-C ANTIGENS; HUMANS; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEINS; PSORIASIS; RISK FACTORS; THAILAND;

EID: 78649380187     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2010.01526.x     Document Type: Article

References (60)

1. Russell TJ, Schultes LM, Kuban DJ. Histocompatibility (HL-A) antigens associated with psoriasis. N Engl J Med 1972: 287: 738-40.
2. Jenisch S, Henseler T, Nair RP, et al. Linkage analysis of human leukocyte antigen (HLA) markers in familial psoriasis: strong disequilibrium effects provide evidence for a major determinant in the HLA-B/-C region. Am J Hum Genet 1998: 63: 191-9.
3. Schmitt-Egenolf M, Eiermann TH, Boehncke WH, Ständer M, Sterry W. Familial juvenile onset psoriasis is associated with the human leukocyte antigen (HLA) class I side of the extended haplotype Cw6-B57-DRB1*0701-DQA1*0201-DQB1*0303: a population-and family-based study. J Invest Dermatol 1996: 106: 711-4.
4. Leder RO, Mansbridge JN, Hallmayer J, Hodge SE. Familial psoriasis and HLA-B: unambiguous support for linkage in 97 published families. Hum Hered 1998: 48: 198-211.
5. Elder JT, Nair RP, Guo SW, Henseler T, Christophers E, Voorhees JJ. The genetics of psoriasis. Arch Dermatol 1994: 130: 216-24.
6. Nair RP, Stuart PE, Nistor I, et al. Sequence and haplotype analysis supports HLA-C as the psoriasis susceptibility 1 gene. Am J Hum Genet 2006: 78: 827-51.
7. Fan X, Yang S, Huang W, et al. Fine mapping of the psoriasis susceptibility locus PSORS1 supports HLA-C as the susceptibility gene in the Han Chinese population. PLoS Genet 2008: 4: e1000038.
8. Raychaudhuri SP, Farber EM. The prevalence of psoriasis in the world. J Eur Acad Dermatol Venereol 2001: 15: 16-7.
9. Vejbaesya S, Eiermann TH, Suthipinititharm P, et al. Serological and molecular analysis of HLA class I and II alleles in Thai patients with psoriasis vulgaris. Tissue Antigens 1998: 52: 389-92.
10. Choonhakarn C, Romphruk A, Puapairoj C, Jirarattanapochai K, Leelayuwat C. Haplotype associations of the major histocompatibility complex with psoriasis in Northeastern Thais. Int J Dermatol 2002: 41: 330-4.
11. Nakagawa H, Asahina A, Akazaki S, et al. Association of Cw11 in Japanese patients with psoriasis vulgaris. Tissue Antigens 1990: 36: 241-2.
12. Koizumi H, Fukaya T, Tsukinaga I, Ohkawara A, Wakisaka A, Aizawa M. HLA antigens in psoriasis vulgaris. Acta Dermatol Kyoto 1988: 83: 483-8.
13. Ozawa A, Miyahara M, Sugai J, et al. HLA class I and II alleles and susceptibility to generalized pustular psoriasis: significant associations with HLA-Cw1 and HLA-DQB1*0303. J Dermatol 1998: 25: 573-81.
14. Henseler T, Christophers E. Psoriasis of early and late onset: characterization of two types of psoriasis vulgaris. J Am Acad Dermatol 1985: 13: 450-6.
15. Nakagawa H, Akazaki S, Asahina A, et al. Study of HLA class I, class II and complement genes (C2, C4A, C4B and BF) in Japanese psoriatics and analysis of a newly-found high-risk haplotype by pulsed field gel electrophoresis. Arch Dermatol Res 1991: 283: 281-4.
16. Horton R, Gibson R, Coggill P, et al. Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project. Immunogenetics 2008: 60: 1-18.
17. Nair RP, Henseler T, Jenisch S, et al. Evidence for two psoriasis susceptibility loci (HLA and 17q) and two novel candidate regions (16q and 20p) by genome-wide scan. Hum Mol Genet 1997: 6: 1349-56.
18. Nair R, Guo S, Jenisch S, et al. Scanning chromosome 17 for psoriasis susceptibility: lack of evidence for a distal 17q locus. Hum Hered 1995: 45: 219-30.
19. Robinson J, Waller MJ, Parham P, et al. IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. Nucleic Acids Res 2003: 31: 311-4.
20. Stewart CA, Horton R, Allcock RJ, et al. Complete MHC haplotype sequencing for common disease gene mapping. Genome Res 2004: 14: 1176-87.
21. Purcell S, Neale B, Todd-Brown K, et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007: 81: 559-75.
22. Faul F, Erdfelder E, Lang AG, Buchner A. G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences. Behav Res Methods 2007: 39: 175-91.
23. Li W, Bernaola-Galvan P, Haghighi F, Grosse I. Applications of recursive segmentation to the analysis of DNA sequences. Comput Chem 2002: 26: 491-510.
24. Bernaoloa-Galvan P, Roman-Roldan R, Oliver JI. Compositional segmentation and long-range fractal correlations in DNA sequences. Phys Rev E 1996: 53: 5181-9.
25. Li W. New stopping criteria for segmenting DNA sequences. Phys Rev Lett 2001: 86: 5815-8.
26. Salamon H, Tarhio J, Ronningen K, Thomson G. On distinguishing unique combinations in biological sequences. J Comput Biol 1996: 3: 407-23.
27. ShefféH. Multiple testing versus multiple estimation. Improper confidence sets. Estimation of directions and ratios. Ann Math Stat 1970: 41: 1-29.
28. Klockars AJ, Hancock GR. Scheffé's more powerful F-protected post hoc procedure. Educ Behav Stat 2000: 25: 13-9.
29. Dawkins R, Leelayuwat C, Gaudieri S, et al. Genomics of the major histocompatibility complex: haplotypes, duplication, retroviruses and disease. Immunol Rev 1999: 167: 275-304.
30. Altshuler D, Brooks LD, Chakravarti A, Collins FS, Daly MJ, Donnelly P. A haplotype map of the human genome. Nature 2005: 437: 1299-320.
31. Gudjonsson JE, Karason A, Antonsdottir AA, et al. HLA-Cw6-positive and HLA-Cw6-negative patients with Psoriasis vulgaris have distinct clinical features. J Invest Dermatol 2002: 118: 362-5.
32. Trembath RC, Clough RL, Rosbotham JL, et al. Identification of a major susceptibility locus on chromosome 6p and evidence for further disease loci revealed by a two stage genome-wide search in psoriasis. Hum Mol Genet 1997: 6: 813-20.
33. Capon F, Di Meglio P, Szaub J, et al. Sequence variants in the genes for the interleukin-23 receptor (IL23R) and its ligand (IL12B) confer protection against psoriasis. Hum Genet 2007: 122: 201-6.
34. Liu Y, Helms C, Liao W, et al. A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci. PLoS Genet 2008: 4: e1000041.
35. Nair RP, Duffin KC, Helms C, et al. Genome-wide scan reveals association of psoriasis with IL-23 and NF-kappaB pathways. Nat Genet 2009: 41: 199-204.
36. Zhang XJ, Huang W, Yang S, et al. Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21. Nat Genet 2009: 41: 205-10.
37. Murray C, Mann DL, Gerber LN, et al. Histocompatibility alloantigens in psoriasis and psoriatic arthritis. Evidence for the influence of multiple genes in the major histocompatibility complex. J Clin Invest 1980: 66: 670-5.
38. Espinoza LR, Vasey FB, Gaylord SW, et al. Histocompatibility typing in the seronegative spondyloarthropathies: a survey. Semin Arthritis Rheum 1982: 11: 375-81.
39. Beaulieu AD, Roy R, Mathon G, et al. Psoriatic arthritis: risk factors for patients with psoriasis-a study based on histocompatibility antigen frequencies. J Rheumatol 1983: 10: 633-6.
40. Gladman DD, Anhorn KA, Schachter RK, Mervart H. HLA antigens in psoriatic arthritis. J Rheumatol 1986: 13: 586-92.
41. Crivellato E, Zacchi T. HLA-B39 and the axial type of psoriatic arthritis. Acta Derm Venereol 1987: 67: 249-50.
42. McHugh NJ, Laurent MR, Treadwell BL, Tweed JM, Dagger J. Psoriatic arthritis: clinical subgroups and histocompatibility antigens. Ann Rheum Dis 1987: 46: 184-8.
43. Gonzalez S, Martinez-Borra J, Lopez-Vazquez A, Garcia-Fernandez S, Torre-Alonso JC, Lopez-Larrea C. MICA rather than MICB, TNFA, or HLA-DRB1 is associated with susceptibility to psoriatic arthritis. J Rheumatol 2002: 29: 973-8.
44. Armstrong RD, Panayi GS, Welsh KI. Histocompatibility antigens in psoriasis, psoriatic arthropathy, and ankylosing spondylitis. Ann Rheum Dis 1983: 42: 142-6.
45. Feng B-J, Soltani-Arabsahi R, Bowcock AM, et al. Multiple loci within the Major Histocompatibility Complex confer risk of psoriasis. PLoS Genet 2009: 5: e1000606.
46. Romphruk AV, Oka A, Romphruk A, et al. Corneodesmosin gene: no evidence for PSORS 1 gene in North-eastern Thai psoriasis patients. Tissue Antigens 2003: 62: 217-24.
47. Lopez-Larrea C, Torre Alonso JC, Rodriguez Perez A, Coto E. HLA antigens in psoriatic arthritis subtypes of a Spanish population. Ann Rheum Dis 1990: 49: 318-9.
48. Gerber LH, Murray CL, Perlman SG, et al. Human lymphocyte antigens characterizing psoriatic arthritis and its subtypes. J Rheumatol 1982: 9: 703-7.
49. Nanda A, Al-Fouzan AS, El-Kashlan M, Al-Sweih N, Al-Muzairai I. Salient features and HLA markers of childhood psoriasis in Kuwait. Clin Exp Dermatol 2000: 25: 147-51.
50. Mallon E, Bunce M, Savoie H, et al. HLA-C and guttate psoriasis. Br J Dermatol 2000: 143: 1177-82.
51. Barber LD, Percival L, Valiante NM, et al. The inter-locus recombinant HLA-B*4601 has high selectivity in peptide binding and functions characteristic of HLA-C. J Exp Med 1996: 184: 735-40.
52. Zemmour J, Gumperz JE, Hildebrand WH, et al. The molecular basis for reactivity of anti-Cw1 and anti-Cw3 alloantisera with HLA-B46 haplotypes. Tissue Antigens 1992: 39: 249-57.
53. Baur MP, Neuebauer M, Albert ED. Reference tables of two-locus haplotype frequencies and delta values in Caucasians, Orientals, and Negroids. Berlin: Springer-Verlag, 1984.
54. McFadden JP, Baker BS, Powles AV, Fry L. Psoriasis and streptococci: the natural selection of psoriasis revisited. Br J Dermatol 2009: 160: 929-37.
55. Asahina A, Akazaki S, Nakagawa H, et al. Specific nucleotide sequence of HLA-C is strongly associated with psoriasis vulgaris. J Invest Dermatol 1991: 97: 254-8.
56. Adams EJ, Parham P. Species-specific evolution of MHC class I genes in the higher primates. Immunol Rev 2001: 183: 41-64.
57. Conrad C, Boyman O, Tonel G, et al. Alpha1beta1 integrin is crucial for accumulation of epidermal T cells and the development of psoriasis. Nat Med 2007: 13: 836-42.
58. Ogasawara K, Lanier LL. NKG2D in NK and T cell-mediated immunity. J Clin Immunol 2005: 25: 534-40.
59. Krueger G, Callis K. Potential of tumor necrosis factor inhibitors in psoriasis and psoriatic arthritis. Arch Dermatol 2004: 140: 218-25.
60. Nair RP, Stuart P, Henseler T, et al. Localization of psoriasis-susceptibility locus PSORS1 to a 60-kb interval telomeric to HLA-C. Am J Hum Genet 2000: 66: 1833-44.