메뉴 건너뛰기




Volumn 40, Issue 4, 2010, Pages 558-570

Pervasive and cooperative deadenylation of 3′utrs by embryonic microRNA families

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MICRORNA;

EID: 78649254115     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2010.11.003     Document Type: Article
Times cited : (84)

References (48)
  • 1
    • 76749134307 scopus 로고    scopus 로고
    • Many families of C. elegans microRNAs are not essential for development or viability
    • Alvarez-Saavedra E., Horvitz H.R. Many families of C. elegans microRNAs are not essential for development or viability. Curr. Biol. 2010, 20:367-373.
    • (2010) Curr. Biol. , vol.20 , pp. 367-373
    • Alvarez-Saavedra, E.1    Horvitz, H.R.2
  • 5
    • 58249088751 scopus 로고    scopus 로고
    • MicroRNAs: target recognition and regulatory functions
    • Bartel D.P. MicroRNAs: target recognition and regulatory functions. Cell 2009, 136:215-233.
    • (2009) Cell , vol.136 , pp. 215-233
    • Bartel, D.P.1
  • 6
    • 34250653704 scopus 로고    scopus 로고
    • MicroRNAs silence gene expression by repressing protein expression and/or by promoting mRNA decay
    • Behm-Ansmant I., Rehwinkel J., Izaurralde E. MicroRNAs silence gene expression by repressing protein expression and/or by promoting mRNA decay. Cold Spring Harb. Symp. Quant. Biol. 2006, 71:523-530.
    • (2006) Cold Spring Harb. Symp. Quant. Biol. , vol.71 , pp. 523-530
    • Behm-Ansmant, I.1    Rehwinkel, J.2    Izaurralde, E.3
  • 7
    • 49749095109 scopus 로고    scopus 로고
    • Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis
    • Boag P.R., Atalay A., Robida S., Reinke V., Blackwell T.K. Protection of specific maternal messenger RNAs by the P body protein CGH-1 (Dhh1/RCK) during Caenorhabditis elegans oogenesis. J. Cell Biol. 2008, 182:543-557.
    • (2008) J. Cell Biol. , vol.182 , pp. 543-557
    • Boag, P.R.1    Atalay, A.2    Robida, S.3    Reinke, V.4    Blackwell, T.K.5
  • 8
    • 0037418839 scopus 로고    scopus 로고
    • Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila
    • Brennecke J., Hipfner D.R., Stark A., Russell R.B., Cohen S.M. bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell 2003, 113:25-36.
    • (2003) Cell , vol.113 , pp. 25-36
    • Brennecke, J.1    Hipfner, D.R.2    Stark, A.3    Russell, R.B.4    Cohen, S.M.5
  • 9
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S. The genetics of Caenorhabditis elegans. Genetics 1974, 77:71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 12
    • 23744492247 scopus 로고    scopus 로고
    • The developmental timing regulator AIN-1 interacts with miRISCs and may target the argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans
    • Ding L., Spencer A., Morita K., Han M. The developmental timing regulator AIN-1 interacts with miRISCs and may target the argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans. Mol. Cell 2005, 19:437-447.
    • (2005) Mol. Cell , vol.19 , pp. 437-447
    • Ding, L.1    Spencer, A.2    Morita, K.3    Han, M.4
  • 16
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
    • Filipowicz W., Bhattacharyya S.N., Sonenberg N. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?. Nat. Rev. Genet. 2008, 9:102-114.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 17
    • 0032545933 scopus 로고    scopus 로고
    • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans
    • Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 1998, 391:806-811.
    • (1998) Nature , vol.391 , pp. 806-811
    • Fire, A.1    Xu, S.2    Montgomery, M.K.3    Kostas, S.A.4    Driver, S.E.5    Mello, C.C.6
  • 18
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19:92-105.
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.2    Burge, C.B.3    Bartel, D.P.4
  • 19
    • 0026038913 scopus 로고
    • The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency
    • Gallie D.R. The cap and poly(A) tail function synergistically to regulate mRNA translational efficiency. Genes Dev. 1991, 5:2108-2116.
    • (1991) Genes Dev. , vol.5 , pp. 2108-2116
    • Gallie, D.R.1
  • 20
    • 53649103818 scopus 로고    scopus 로고
    • Processing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos
    • Gallo C.M., Munro E., Rasoloson D., Merritt C., Seydoux G. Processing bodies and germ granules are distinct RNA granules that interact in C. elegans embryos. Dev. Biol. 2008, 323:76-87.
    • (2008) Dev. Biol. , vol.323 , pp. 76-87
    • Gallo, C.M.1    Munro, E.2    Rasoloson, D.3    Merritt, C.4    Seydoux, G.5
  • 22
    • 41149138114 scopus 로고    scopus 로고
    • Multifunctional deadenylase complexes diversify mRNA control
    • Goldstrohm A.C., Wickens M. Multifunctional deadenylase complexes diversify mRNA control. Nat. Rev. Mol. Cell Biol. 2008, 9:337-344.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 337-344
    • Goldstrohm, A.C.1    Wickens, M.2
  • 24
    • 17844364875 scopus 로고    scopus 로고
    • Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing
    • Grishok A., Pasquinelli A.E., Conte D., Li N., Parrish S., Ha I., Baillie D.L., Fire A., Ruvkun G., Mello C.C. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell 2001, 106:23-34.
    • (2001) Cell , vol.106 , pp. 23-34
    • Grishok, A.1    Pasquinelli, A.E.2    Conte, D.3    Li, N.4    Parrish, S.5    Ha, I.6    Baillie, D.L.7    Fire, A.8    Ruvkun, G.9    Mello, C.C.10
  • 26
    • 61349169058 scopus 로고    scopus 로고
    • Nhl-2 modulates microRNA activity in Caenorhabditis elegans
    • Hammell C.M., Lubin I., Boag P.R., Blackwell T.K., Ambros V. nhl-2 modulates microRNA activity in Caenorhabditis elegans. Cell 2009, 136:926-938.
    • (2009) Cell , vol.136 , pp. 926-938
    • Hammell, C.M.1    Lubin, I.2    Boag, P.R.3    Blackwell, T.K.4    Ambros, V.5
  • 27
    • 50849141708 scopus 로고    scopus 로고
    • MirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts
    • Hammell M., Long D., Zhang L., Lee A., Carmack C.S., Han M., Ding Y., Ambros V. mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat. Methods 2008, 5:813-819.
    • (2008) Nat. Methods , vol.5 , pp. 813-819
    • Hammell, M.1    Long, D.2    Zhang, L.3    Lee, A.4    Carmack, C.S.5    Han, M.6    Ding, Y.7    Ambros, V.8
  • 28
    • 19344378192 scopus 로고    scopus 로고
    • Sequence-specific inhibition of small RNA function
    • Hutvagner G., Simard M.J., Mello C.C., Zamore P.D. Sequence-specific inhibition of small RNA function. PLoS Biol. 2004, 2:E98. 10.1371/journal.pbio.0020098.
    • (2004) PLoS Biol. , vol.2
    • Hutvagner, G.1    Simard, M.J.2    Mello, C.C.3    Zamore, P.D.4
  • 29
    • 51349103571 scopus 로고    scopus 로고
    • Sequence relationships among C. elegans, D. melanogaster and human microRNAs highlight the extensive conservation of microRNAs in biology
    • Ibanez-Ventoso C., Vora M., Driscoll M. Sequence relationships among C. elegans, D. melanogaster and human microRNAs highlight the extensive conservation of microRNAs in biology. PLoS ONE 2008, 3:e2818. 10.1371/journal.pone.0002818.
    • (2008) PLoS ONE , vol.3
    • Ibanez-Ventoso, C.1    Vora, M.2    Driscoll, M.3
  • 30
    • 58849148000 scopus 로고    scopus 로고
    • MicroRNA-17-92 down-regulates expression of distinct targets in different B-cell lymphoma subtypes
    • Inomata M., Tagawa H., Guo Y.M., Kameoka Y., Takahashi N., Sawada K. MicroRNA-17-92 down-regulates expression of distinct targets in different B-cell lymphoma subtypes. Blood 2009, 113:396-402.
    • (2009) Blood , vol.113 , pp. 396-402
    • Inomata, M.1    Tagawa, H.2    Guo, Y.M.3    Kameoka, Y.4    Takahashi, N.5    Sawada, K.6
  • 32
    • 0035887005 scopus 로고    scopus 로고
    • Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans
    • Ketting R.F., Fischer S.E., Bernstein E., Sijen T., Hannon G.J., Plasterk R.H. Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans. Genes Dev. 2001, 15:2654-2659.
    • (2001) Genes Dev. , vol.15 , pp. 2654-2659
    • Ketting, R.F.1    Fischer, S.E.2    Bernstein, E.3    Sijen, T.4    Hannon, G.J.5    Plasterk, R.H.6
  • 33
    • 0035955361 scopus 로고    scopus 로고
    • An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    • Lau N.C., Lim L.P., Weinstein E.G., Bartel D.P. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 2001, 294:858-862.
    • (2001) Science , vol.294 , pp. 858-862
    • Lau, N.C.1    Lim, L.P.2    Weinstein, E.G.3    Bartel, D.P.4
  • 35
    • 68149094266 scopus 로고    scopus 로고
    • Egl-1: a key activator of apoptotic cell death in C. elegans
    • Nehme R., Conradt B. egl-1: a key activator of apoptotic cell death in C. elegans. Oncogene 2008, 27(Suppl 1):S30-S40.
    • (2008) Oncogene , vol.27 , Issue.SUPPL 1
    • Nehme, R.1    Conradt, B.2
  • 36
    • 0033572284 scopus 로고    scopus 로고
    • The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation
    • Olsen P.H., Ambros V. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. Dev. Biol. 1999, 216:671-680.
    • (1999) Dev. Biol. , vol.216 , pp. 671-680
    • Olsen, P.H.1    Ambros, V.2
  • 37
    • 1842766252 scopus 로고    scopus 로고
    • A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila
    • Pham J.W., Pellino J.L., Lee Y.S., Carthew R.W., Sontheimer E.J. A Dicer-2-dependent 80s complex cleaves targeted mRNAs during RNAi in Drosophila. Cell 2004, 117:83-94.
    • (2004) Cell , vol.117 , pp. 83-94
    • Pham, J.W.1    Pellino, J.L.2    Lee, Y.S.3    Carthew, R.W.4    Sontheimer, E.J.5
  • 38
    • 27144543663 scopus 로고    scopus 로고
    • Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs
    • Raymond C.K., Roberts B.S., Garrett-Engele P., Lim L.P., Johnson J.M. Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs. RNA 2005, 11:1737-1744.
    • (2005) RNA , vol.11 , pp. 1737-1744
    • Raymond, C.K.1    Roberts, B.S.2    Garrett-Engele, P.3    Lim, L.P.4    Johnson, J.M.5
  • 39
    • 34249856066 scopus 로고    scopus 로고
    • Distance constraints between microRNA target sites dictate efficacy and cooperativity
    • Saetrom P., Heale B.S., Snove O., Aagaard L., Alluin J., Rossi J.J. Distance constraints between microRNA target sites dictate efficacy and cooperativity. Nucleic Acids Res. 2007, 35:2333-2342.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 2333-2342
    • Saetrom, P.1    Heale, B.S.2    Snove, O.3    Aagaard, L.4    Alluin, J.5    Rossi, J.J.6
  • 41
    • 0028114328 scopus 로고
    • Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans
    • Seydoux G., Fire A. Soma-germline asymmetry in the distributions of embryonic RNAs in Caenorhabditis elegans. Development 1994, 120:2823-2834.
    • (1994) Development , vol.120 , pp. 2823-2834
    • Seydoux, G.1    Fire, A.2
  • 43
    • 0037188904 scopus 로고    scopus 로고
    • The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans
    • Tabara H., Yigit E., Siomi H., Mello C.C. The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans. Cell 2002, 109:861-871.
    • (2002) Cell , vol.109 , pp. 861-871
    • Tabara, H.1    Yigit, E.2    Siomi, H.3    Mello, C.C.4
  • 44
    • 0035941485 scopus 로고    scopus 로고
    • Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
    • Timmons L., Court D.L., Fire A. Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene 2001, 263:103-112.
    • (2001) Gene , vol.263 , pp. 103-112
    • Timmons, L.1    Court, D.L.2    Fire, A.3
  • 47
    • 0036624537 scopus 로고    scopus 로고
    • Shotgun proteomics: tools for the analysis of complex biological systems
    • Wu C.C., MacCoss M.J. Shotgun proteomics: tools for the analysis of complex biological systems. Curr. Opin. Mol. Ther. 2002, 4:242-250.
    • (2002) Curr. Opin. Mol. Ther. , vol.4 , pp. 242-250
    • Wu, C.C.1    MacCoss, M.J.2
  • 48
    • 33645119514 scopus 로고    scopus 로고
    • MicroRNAs direct rapid deadenylation of mRNA
    • Wu L., Fan J., Belasco J.G. MicroRNAs direct rapid deadenylation of mRNA. Proc. Natl. Acad. Sci. USA 2006, 103:4034-4039.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4034-4039
    • Wu, L.1    Fan, J.2    Belasco, J.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.